From 45429759bb681ec1d4adc52e73d375531bf855ea Mon Sep 17 00:00:00 2001 From: edwin Date: Sat, 24 May 2008 07:00:37 +0000 Subject: New port: biology/consed viewing and editing workbench for sequence assembly Consed is a tool for viewing, editing, and finishing sequence assemblies. The port is constituted of 4 parts: biology/phred: base caller with quality evaluation biology/phrap: sequence assembler for shotgun sequencing biology/consed: workbench biology/phd2fasta: small utility All these can be used separately; however, most function of consed depends on the others. Although these programs are licensed freely for academic and nonprofit purposes, users have to contact the authors to get the softwares. Phred (including phd2fasta) and phrap are emailed, and consed can be downloaded to a restricted IP address. For commercial users, the licensing fee is ca. $10,000 at the time of writing. PR: ports/118548 Submitted by: Motomichi Matsuzaki --- biology/consed/pkg-descr | 4 ++++ 1 file changed, 4 insertions(+) create mode 100644 biology/consed/pkg-descr (limited to 'biology/consed/pkg-descr') diff --git a/biology/consed/pkg-descr b/biology/consed/pkg-descr new file mode 100644 index 000000000000..f0c1defcddd8 --- /dev/null +++ b/biology/consed/pkg-descr @@ -0,0 +1,4 @@ +Consed is a tool for viewing and editing sequence assemblies made by phrap, +and includes Autofinish which will automatically choose finishing reads. + +WWW: http://www.phrap.org/consed/consed.html -- cgit