From 2291db64eca37ef1d8fc4d018c7dd435c7171918 Mon Sep 17 00:00:00 2001 From: Gerald Pfeifer Date: Fri, 13 Dec 2013 09:34:40 +0000 Subject: Fix the build with more standards-compliant compilers such as GCC 4.7. [1] On the way replace USE_GMAKE by USES=gmake. PR: 184566 [1], 182136 Submitted by: Christoph Moench-Tegeder [1] Approved by: maintainer (Jason Bacon ) [1] --- biology/plink/Makefile | 2 +- biology/plink/files/patch-elf.cpp | 25 +++++++++++++++++++++++++ biology/plink/files/patch-idhelp.cpp | 19 +++++++++++++++++++ biology/plink/files/patch-sets.cpp | 18 ++++++++++++++++++ 4 files changed, 63 insertions(+), 1 deletion(-) create mode 100644 biology/plink/files/patch-elf.cpp create mode 100644 biology/plink/files/patch-idhelp.cpp create mode 100644 biology/plink/files/patch-sets.cpp (limited to 'biology') diff --git a/biology/plink/Makefile b/biology/plink/Makefile index 3a03a5eee00c..bfd37ec1e825 100644 --- a/biology/plink/Makefile +++ b/biology/plink/Makefile @@ -15,8 +15,8 @@ LICENSE= GPLv2 LIB_DEPENDS= liblapack.so:${PORTSDIR}/math/lapack +USES= gmake USE_ZIP= yes -USE_GMAKE= yes USE_FORTRAN= yes # Make it use the same compiler as lapack PLIST_FILES= bin/plink diff --git a/biology/plink/files/patch-elf.cpp b/biology/plink/files/patch-elf.cpp new file mode 100644 index 000000000000..0cc22cb84e6a --- /dev/null +++ b/biology/plink/files/patch-elf.cpp @@ -0,0 +1,25 @@ +--- elf.cpp.orig 2013-11-16 17:09:56.000000000 +0100 ++++ elf.cpp 2013-11-16 17:10:24.000000000 +0100 +@@ -1175,10 +1175,10 @@ + << setw(8) << gcnt << " " + << setw(8) << (double)cnt / (double)gcnt << "\n"; + +- map::iterator i = chr_cnt.begin(); +- while ( i != chr_cnt.end() ) ++ map::iterator ichr = chr_cnt.begin(); ++ while ( ichr != chr_cnt.end() ) + { +- int c = i->first; ++ int c = ichr->first; + int x = chr_cnt.find( c )->second; + int y = chr_gcnt.find( c )->second; + +@@ -1189,7 +1189,7 @@ + << setw(8) << y << " " + << setw(8) << (double)x / (double)y << "\n"; + +- ++i; ++ ++ichr; + } + + } diff --git a/biology/plink/files/patch-idhelp.cpp b/biology/plink/files/patch-idhelp.cpp new file mode 100644 index 000000000000..c0026984f854 --- /dev/null +++ b/biology/plink/files/patch-idhelp.cpp @@ -0,0 +1,19 @@ +--- idhelp.cpp.orig 2013-11-16 17:11:42.000000000 +0100 ++++ idhelp.cpp 2013-11-16 17:12:53.000000000 +0100 +@@ -772,12 +772,12 @@ + for (int j = 0 ; j < jointField.size(); j++ ) + { + set & jf = jointField[j]; +- set::iterator j = jf.begin(); ++ set::iterator jfit = jf.begin(); + PP->printLOG(" { "); +- while ( j != jf.end() ) ++ while ( jfit != jf.end() ) + { +- PP->printLOG( (*j)->name + " " ); +- ++j; ++ PP->printLOG( (*jfit)->name + " " ); ++ ++jfit; + } + PP->printLOG(" }"); + } diff --git a/biology/plink/files/patch-sets.cpp b/biology/plink/files/patch-sets.cpp new file mode 100644 index 000000000000..4d773fb36db2 --- /dev/null +++ b/biology/plink/files/patch-sets.cpp @@ -0,0 +1,18 @@ +--- sets.cpp.orig 2013-11-16 17:06:29.000000000 +0100 ++++ sets.cpp 2013-11-16 17:07:12.000000000 +0100 +@@ -768,11 +768,11 @@ + ////////////////////////////////////////////// + // Reset original missing status + +- vector::iterator i = PP->sample.begin(); +- while ( i != PP->sample.end() ) ++ vector::iterator ipp = PP->sample.begin(); ++ while ( ipp != PP->sample.end() ) + { +- (*i)->missing = (*i)->flag; +- ++i; ++ (*ipp)->missing = (*ipp)->flag; ++ ++ipp; + } + + //////////////////////////////////////////////// -- cgit rge-4.6.2'>dependabot/npm_and_yarn/devel/electron6/files/lodash.merge-4.6.2 FreeBSD GNOME current development ports (https://github.com/freebsd/freebsd-ports-gnome)
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path: root/devel/qross/Makefile
Commit message (Expand)AuthorAgeFilesLines
* - Add explicit dependence on Qt 4 componentsMax Brazhnikov2014-01-071-1/+1
* Add NO_STAGE all over the place in preparation for the staging support (cat: ...Baptiste Daroussin2013-09-211-0/+1
* - Changed my emailVeniamin Gvozdikov2013-07-221-2/+2
* - convert USE_CMAKE to USESMax Brazhnikov2013-03-231-1/+1
* Bump PORTREVISON after devel/py-sip and devel/qscintilla2 update.Max Brazhnikov2013-02-041-1/+1
* - Trim Makefile header per new world orderAlexey Dokuchaev2012-12-121-6/+19
* Port of Qross 0.2.2, a Qt-only fork of Kross, the KDE scripting framework.Alexey Dokuchaev2012-08-31