From dde5761b57b257d378f42f852a59f8589b18a74b Mon Sep 17 00:00:00 2001
From: marino <marino@FreeBSD.org>
Date: Sun, 18 Dec 2016 05:34:42 +0000
Subject: biology/protomol: Support build with C++11 (taken from dports)

---
 biology/protomol/files/patch-framework_base_PGM.cpp            |  9 +++++++++
 biology/protomol/files/patch-framework_base_PPM.cpp            |  9 +++++++++
 .../protomol/files/patch-framework_base_stringutilities.cpp    | 10 ++++++++++
 biology/protomol/files/patch-framework_imd_imd.cpp             | 10 ++++++++++
 biology/protomol/files/patch-framework_imd_vmdsock.cpp         | 10 ++++++++++
 5 files changed, 48 insertions(+)
 create mode 100644 biology/protomol/files/patch-framework_base_PGM.cpp
 create mode 100644 biology/protomol/files/patch-framework_base_PPM.cpp
 create mode 100644 biology/protomol/files/patch-framework_base_stringutilities.cpp
 create mode 100644 biology/protomol/files/patch-framework_imd_imd.cpp
 create mode 100644 biology/protomol/files/patch-framework_imd_vmdsock.cpp

(limited to 'biology')

diff --git a/biology/protomol/files/patch-framework_base_PGM.cpp b/biology/protomol/files/patch-framework_base_PGM.cpp
new file mode 100644
index 000000000000..2f21a8726773
--- /dev/null
+++ b/biology/protomol/files/patch-framework_base_PGM.cpp
@@ -0,0 +1,9 @@
+--- framework/base/PGM.cpp.orig	2005-05-07 14:40:23 UTC
++++ framework/base/PGM.cpp
+@@ -1,5 +1,6 @@
+ #include "PGM.h"
+ #include "PPM.h"
++#include <cstddef> // C++11 NULL
+ #include <vector> // NULL definition
+ 
+ namespace ProtoMol {
diff --git a/biology/protomol/files/patch-framework_base_PPM.cpp b/biology/protomol/files/patch-framework_base_PPM.cpp
new file mode 100644
index 000000000000..2b6f1dd29523
--- /dev/null
+++ b/biology/protomol/files/patch-framework_base_PPM.cpp
@@ -0,0 +1,9 @@
+--- framework/base/PPM.cpp.orig	2005-05-07 14:40:23 UTC
++++ framework/base/PPM.cpp
+@@ -1,5 +1,6 @@
+ #include "PPM.h"
+ #include "PGM.h"
++#include <cstddef> // C++11 NULL
+ #include <vector> // NULL definition
+ 
+ namespace ProtoMol {
diff --git a/biology/protomol/files/patch-framework_base_stringutilities.cpp b/biology/protomol/files/patch-framework_base_stringutilities.cpp
new file mode 100644
index 000000000000..8fee5ecfa3c9
--- /dev/null
+++ b/biology/protomol/files/patch-framework_base_stringutilities.cpp
@@ -0,0 +1,10 @@
+--- framework/base/stringutilities.cpp.orig	2005-05-07 14:40:24 UTC
++++ framework/base/stringutilities.cpp
+@@ -3,6 +3,7 @@
+ 
+ #include <algorithm>
+ #include <stdlib.h>
++#include <cstring>
+ #include <errno.h>
+ 
+ #include "Report.h"
diff --git a/biology/protomol/files/patch-framework_imd_imd.cpp b/biology/protomol/files/patch-framework_imd_imd.cpp
new file mode 100644
index 000000000000..824b859f0ad7
--- /dev/null
+++ b/biology/protomol/files/patch-framework_imd_imd.cpp
@@ -0,0 +1,10 @@
+--- framework/imd/imd.cpp.orig	2005-05-07 14:40:25 UTC
++++ framework/imd/imd.cpp
+@@ -1,6 +1,7 @@
+ #include "imd.h"
+ #include "vmdsock.h"
+ #include <string>
++#include <cstring>
+ using std::string;
+ #include <errno.h>
+ #include <stdlib.h>
diff --git a/biology/protomol/files/patch-framework_imd_vmdsock.cpp b/biology/protomol/files/patch-framework_imd_vmdsock.cpp
new file mode 100644
index 000000000000..575f0bea52aa
--- /dev/null
+++ b/biology/protomol/files/patch-framework_imd_vmdsock.cpp
@@ -0,0 +1,10 @@
+--- framework/imd/vmdsock.cpp.orig	2005-05-07 14:40:25 UTC
++++ framework/imd/vmdsock.cpp
+@@ -32,6 +32,7 @@ namespace ProtoMol {
+ #include <stdio.h>
+ #include <stdlib.h>
+ #include <string>
++#include <cstring>
+ using std::string;
+ 
+ #if defined(WIN32)
-- 
cgit