#	from: @(#)bsd.subdir.mk	5.9 (Berkeley) 2/1/91
# $FreeBSD$
#
# The include file <bsd.port.subdir.mk> contains the default targets
# for building ports subdirectories.
#
#
# +++ variables +++
#
# STRIP		- The flag passed to the install program to cause the binary
#		  to be stripped.  This is to be used when building your
#		  own install script so that the entire system can be made
#		  stripped/not-stripped using a single knob. [-s]
#
# OPSYS		- Get the operating system type [`uname -s`]
#
# SUBDIR	- A list of subdirectories that should be built as well.
#		  Each of the targets will execute the same target in the
#		  subdirectories.
#
#
# +++ targets +++
#
#	README.html:
#		Creating README.html for package.
#
#	afterinstall, all, beforeinstall, build, checksum, clean,
#	clean-for-cdrom, clean-restricted,
#	clean-for-cdrom-list, clean-restricted-list,
#	configure, deinstall,
#	depend, depends, describe, extract, fetch, fetch-list,
#	ignorelist, ignorelist-verbose,
#	install, maintainer, makesum, package, readmes, realinstall, reinstall,
#	tags
#
#	search:
#		Search for ports using either 'make search key=<keyword>'
#		or 'make search name=<keyword>'.

PORTSDIR?=		/usr/ports
TEMPLATES?=		${PORTSDIR}/Templates
.if defined(PORTSTOP)
README=			${TEMPLATES}/README.top
.else
README=			${TEMPLATES}/README.category
.endif
MOVEDDIR?=		${PORTSDIR}
MOVEDFILE?=		MOVED

.include "${PORTSDIR}/Mk/bsd.commands.mk"

.MAIN: all

.if !defined(DEBUG_FLAGS)
STRIP?=	-s
.endif

# These are variables that are invariant for the lifetime of a recursive port traversal
# (index build, etc), so it is more efficient to precompute them here and pass them in
# to child makes explicitly, instead of recomputing them tens of thousands of times.

.if !defined(NOPRECIOUSMAKEVARS)
.if !defined(ARCH)
ARCH!=	${UNAME} -p
.endif

.if !defined(OSVERSION)
.if exists(/usr/include/sys/param.h)
OSVERSION!=	${AWK} '/^\#define[[:blank:]]__FreeBSD_version/ {print $$3}' < /usr/include/sys/param.h
.elif exists(${SRC_BASE}/sys/sys/param.h)
OSVERSION!=	${AWK} '/^\#define[[:blank:]]__FreeBSD_version/ {print $$3}' < ${SRC_BASE}/sys/sys/param.h
.else
OSVERSION!=	${SYSCTL} -n kern.osreldate
.endif
.endif

WITH_PKG=	yes
WITH_PKGNG=	yes

.if !defined(_OSRELEASE)
_OSRELEASE!=			${UNAME} -r
.endif
.if !defined(OSREL)
OSREL=	${_OSRELEASE:C/[-(].*//}
.endif

.if !defined(OPSYS)
OPSYS!=	${UNAME} -s
.endif

.if ${ARCH} == "amd64" || ${ARCH} =="ia64"
.if !defined(HAVE_COMPAT_IA32_KERN)
HAVE_COMPAT_IA32_KERN!= if ${SYSCTL} -n compat.ia32.maxvmem >/dev/null 2>&1; then echo YES; fi; echo
.if empty(HAVE_COMPAT_IA32_KERN)
.undef HAVE_COMPAT_IA32_KERN
.endif
.endif
.endif

.if !defined(CONFIGURE_MAX_CMD_LEN)
CONFIGURE_MAX_CMD_LEN!= ${SYSCTL} -n kern.argmax
.endif

.if !defined(_JAVA_VERSION_LIST_REGEXP)
_JAVA_VERSION_LIST_REGEXP!=	${MAKE} -V _JAVA_VERSION_LIST_REGEXP USE_JAVA=1 -f ${PORTSDIR}/Mk/bsd.port.mk
.endif

.if !defined(_JAVA_VENDOR_LIST_REGEXP)
_JAVA_VENDOR_LIST_REGEXP!=	${MAKE} -V _JAVA_VENDOR_LIST_REGEXP USE_JAVA=1 -f ${PORTSDIR}/Mk/bsd.port.mk
.endif

.if !defined(_JAVA_OS_LIST_REGEXP)
_JAVA_OS_LIST_REGEXP!=		${MAKE} -V _JAVA_OS_LIST_REGEXP USE_JAVA=1 -f ${PORTSDIR}/Mk/bsd.port.mk
.endif

.if !defined(_JAVA_PORTS_INSTALLED)
_JAVA_PORTS_INSTALLED!=		${MAKE} -V _JAVA_PORTS_INSTALLED USE_JAVA=1 -f ${PORTSDIR}/Mk/bsd.port.mk
.endif

.if !defined(UID)
UID!=	${ID} -u
.endif

.endif

INDEXDIR?=	${PORTSDIR}
INDEXFILE?=	INDEX-${OSVERSION:C/([0-9]*)[0-9]{5}/\1/}

# local customization of the ports tree
.if exists(${.CURDIR}/Makefile.local)
.include "${.CURDIR}/Makefile.local"
.endif

TARGETS+=	all
TARGETS+=	build
TARGETS+=	checksum
TARGETS+=	clean
TARGETS+=	clean-for-cdrom
TARGETS+=	clean-for-cdrom-list
TARGETS+=	clean-restricted
TARGETS+=	clean-restricted-list
TARGETS+=	configure
TARGETS+=	deinstall
TARGETS+=	depend
TARGETS+=	depends
TARGETS+=	distclean
TARGETS+=	extract
TARGETS+=	fetch
TARGETS+=	fetch-list
TARGETS+=	ignorelist
TARGETS+=	ignorelist-verbose
TARGETS+=	makesum
TARGETS+=	maintainer
TARGETS+=	package
TARGETS+=	package-recursive
TARGETS+=	realinstall
TARGETS+=	reinstall
TARGETS+=	tags

.for __target in ${TARGETS}
.if !target(${__target})
.if defined(SUBDIR) && !empty(SUBDIR)
${__target}: ${SUBDIR:S/^/_/:S/$/.${__target}/}
.else
${__target}:
.endif
.endif
.endfor

.if defined(SUBDIR) && !empty(SUBDIR)

.for __target in ${TARGETS} checksubdirs describe readmes
${SUBDIR:S/^/_/:S/$/.${__target}/}: _SUBDIRUSE
.endfor

_SUBDIRUSE: .USE
	@OK=""; sub=${.TARGET:S/^_//:R}; \
	for dud in $$DUDS; do \
		if [ $${dud} = $$sub ]; then \
			OK="false"; \
			${ECHO_MSG} "===> ${DIRPRFX}$$sub skipped"; \
		fi; \
	done; \
	if test -d ${.CURDIR}/$${sub}.${MACHINE_ARCH}; then \
		edir=$${sub}.${MACHINE_ARCH}; \
	elif test -d ${.CURDIR}/$${sub}; then \
		edir=$${sub}; \
	else \
		OK="false"; \
		${ECHO_MSG} "===> ${DIRPRFX}$${sub} non-existent"; \
	fi; \
	if [ "$$OK" = "" ]; then \
		${ECHO_MSG} "===> ${DIRPRFX}$${edir}"; \
		cd ${.CURDIR}/$${edir}; \
		${MAKE} -B ${.TARGET:E:realinstall=install} \
			DIRPRFX=${DIRPRFX}$$edir/; \
	fi

.for _subdir in ${SUBDIR:S/^/_/}
${_subdir}::   ${_subdir:S/$/.all/}
.endfor

.endif

.if !target(install)
.if !target(beforeinstall)
beforeinstall:
.endif
.if !target(afterinstall)
afterinstall:
.endif
install: afterinstall
afterinstall: realinstall
realinstall: beforeinstall ${SUBDIR:S/^/_/:S/$/.realinstall/}
.endif

IGNOREDIR=	Mk Templates Tools distfiles packages pkg Keywords

.if !target(checksubdirs)
.if defined(PORTSTOP)
checksubdirs: checksubdir ${SUBDIR:S/^/_/:S/$/.checksubdirs/}
.else
checksubdirs: checksubdir
.endif
.endif

.if !target(checksubdir)
checksubdir:
	@for d in *; do \
	  if [ -d "$$d" ]; then \
	    found=0; \
	    for s in ${SUBDIR} ${IGNOREDIR}; do \
	      if [ "x$$s" = "x$$d" ]; then \
	        found=1; \
	        break; \
	      fi; \
	    done; \
	    if [ $$found = 0 ]; then \
	      ${ECHO_MSG} "Warning: directory $$d not in SUBDIR"; \
	    fi; \
	  fi; \
	done
	@for s in ${SUBDIR}; do \
	  if ! [ -d ${.CURDIR}/$$s ]; then \
	    ${ECHO_MSG} "Warning: directory $$s in SUBDIR does not exist"; \
	  fi \
	done
.endif

.if !target(describe)
.if defined(PORTSTOP)
# This is a bit convoluted to deal with the fact that make will overlap I/O from child make processes
# if they write more than 2k: this will corrupt the INDEX file.  make -P does not do this, but it adds
# extraneous output and redirects stderr, so we lose error reporting from child makes.  Instead we have
# to roll our own implementation of make -P and make sure that each child make writes to their own file,
# which we will combine at the end.  This gives substantial performance benefits over doing a make -j1

.if defined(BUILDING_INDEX)
describe: ${SUBDIR:S/^/describe./}

.for i in ${SUBDIR}
describe.$i:
	@cd ${.CURDIR}; ${MAKE} -B ${i:S/^/_/:S/$/.describe/} > ${INDEX_TMPDIR}/${INDEXFILE}.desc.${i}
.endfor
.else
describe: ${SUBDIR:S/^/_/:S/$/.describe/}
.endif
.else
describe:
	@for sub in ${SUBDIR}; do \
	if ${TEST} -d ${.CURDIR}/$${sub}; then \
		${ECHO_MSG} "===> ${DIRPRFX}$${sub}"; \
		cd ${.CURDIR}/$${sub}; \
		${MAKE} -B describe || \
			(${ECHO_CMD} "===> ${DIRPRFX}$${sub} failed" >&2; \
			exit 1) ;\
	else \
		${ECHO_MSG} "===> ${DIRPRFX}$${sub} non-existent"; \
	fi; \
	done
.endif
.endif

.if !target(readmes)
.if defined(PORTSTOP)
readmes: readme ${SUBDIR:S/^/_/:S/$/.readmes/}
	@${ECHO_MSG} "===>   Creating README.html for all ports"
	@perl ${PORTSDIR}/Tools/make_readmes < ${INDEXDIR}/${INDEXFILE}
.else
readmes: readme
.endif
.endif

.if !target(readme)
readme:
	@${RM} -f README.html
	@${MAKE} README.html
.endif

HTMLIFY=	${SED} -e 's/&/\&amp;/g' -e 's/>/\&gt;/g' -e 's/</\&lt;/g'

package-name:
	@${ECHO_CMD} ${.CURDIR} | ${SED} -e 's^.*/^^'

README.html:
	@${ECHO_CMD} "===>  Creating README.html"
	@> $@.tmp
.for entry in ${SUBDIR}
.if exists(${entry})
.if defined(PORTSTOP)
	@${ECHO_CMD} -n '<a href="'${entry}/README.html'">'"`${ECHO_CMD} ${entry} | ${HTMLIFY}`"'</a>: ' >> $@.tmp
.else
	@${ECHO_CMD} -n '<a href="'${entry}/README.html'">'"`cd ${entry}; ${MAKE} package-name | ${HTMLIFY}`</a>: " >> $@.tmp
.endif
	@${ECHO_CMD} `cd ${entry}; ${MAKE} -V COMMENT` | ${HTMLIFY} >> $@.tmp
.endif
.endfor
	@${SORT} -t '>' +1 -2 $@.tmp > $@.tmp2
.if exists(${DESCR})
	@${HTMLIFY} ${DESCR} > $@.tmp3
.else
	@> $@.tmp3
.endif
.if defined(COMMENT)
	@${ECHO_CMD} "${COMMENT}" | ${HTMLIFY} > $@.tmp4
.else
	@> $@.tmp4
.endif
	@${CAT} ${README} | \
		${SED} -e 's/%%CATEGORY%%/'"`basename ${.CURDIR}`"'/g' \
			-e '/%%COMMENT%%/r$@.tmp4' \
			-e '/%%COMMENT%%/d' \
			-e '/%%DESCR%%/r$@.tmp3' \
			-e '/%%DESCR%%/d' \
			-e '/%%SUBDIR%%/r$@.tmp2' \
			-e '/%%SUBDIR%%/d' \
		> $@
	@${RM} -f $@.tmp $@.tmp2 $@.tmp3 $@.tmp4

# Pass in the cached invariant variables to child makes.
# XXX Why are we trying to escape these characters using regexps and not using ':Q'?
.if !defined(NOPRECIOUSMAKEVARS)
.MAKEFLAGS: \
	ARCH="${ARCH:S/"/"'"'"/g:S/\$/\$\$/g:S/\\/\\\\/g}" \
	OPSYS="${OPSYS:S/"/"'"'"/g:S/\$/\$\$/g:S/\\/\\\\/g}" \
	OSREL="${OSREL:S/"/"'"'"/g:S/\$/\$\$/g:S/\\/\\\\/g}" \
	OSVERSION="${OSVERSION:S/"/"'"'"/g:S/\$/\$\$/g:S/\\/\\\\/g}" \
	UID="${UID:S/"/"'"'"/g:S/\$/\$\$/g:S/\\/\\\\/g}" \
	HAVE_COMPAT_IA32_KERN="${HAVE_COMPAT_IA32_KERN}" \
	CONFIGURE_MAX_CMD_LEN="${CONFIGURE_MAX_CMD_LEN}" \
	_JAVA_VERSION_LIST_REGEXP="${_JAVA_VERSION_LIST_REGEXP:Q}" \
	_JAVA_VENDOR_LIST_REGEXP="${_JAVA_VENDOR_LIST_REGEXP:Q}" \
	_JAVA_OS_LIST_REGEXP="${_JAVA_OS_LIST_REGEXP:Q}" \
	_JAVA_PORTS_INSTALLED="${_JAVA_PORTS_INSTALLED}"
.endif

PORTSEARCH_DISPLAY_FIELDS?=name,path,info,maint,index,bdeps,rdeps,www
PORTSEARCH_KEYLIM?=0
PORTSEARCH_XKEYLIM?=0
PORTSEARCH_IGNORECASE?=1
PORTSEARCH_MOVED?=1

_PORTSEARCH=	\
	here=${.CURDIR}; \
	if [ ! -r ${INDEXDIR}/${INDEXFILE} ] ; then \
		${ECHO_MSG} "The ${.TARGET} target requires ${INDEXFILE}. Please run make index or make fetchindex."; \
	else \
	cd ${PORTSDIR}; \
	if [ -z "$$key"   -a -z "$$xkey"   -a \
	     -z "$$name"  -a -z "$$xname"  -a \
	     -z "$$path"  -a -z "$$xpath"  -a \
	     -z "$$info"  -a -z "$$xinfo"  -a \
	     -z "$$maint" -a -z "$$xmaint" -a \
	     -z "$$cat"   -a -z "$$xcat"   -a \
	     -z "$$bdeps" -a -z "$$xbdeps" -a \
	     -z "$$rdeps" -a -z "$$xrdeps" -a \
	     -z "$$www"   -a -z "$$xwww"   ]; \
	then \
	  ${ECHO_MSG} "The ${.TARGET} target requires a keyword parameter or name parameter,"; \
	  ${ECHO_MSG} "e.g.: \"make ${.TARGET} key=somekeyword\""; \
	  ${ECHO_MSG} "or    \"make ${.TARGET} name=somekeyword\""; \
	  exit; \
	fi; \
	${AWK} -F\| -v there="$$here/" -v top="$$(pwd -P)" \
	    -v key="$$key"          -v xkey="$$xkey" \
	    -v name="$$name"        -v xname="$$xname" \
	    -v path="$$path"        -v xpath="$$xpath" \
	    -v info="$$info"        -v xinfo="$$xinfo" \
	    -v maint="$$maint"      -v xmaint="$$xmaint" \
	    -v cat="$$cat"          -v xcat="$$xcat" \
	    -v bdeps="$$bdeps"      -v xbdeps="$$xbdeps" \
	    -v rdeps="$$rdeps"      -v xrdeps="$$xrdeps" \
	    -v www="$$www"          -v xwww="$$xwww" \
	    -v icase="$${icase:-${PORTSEARCH_IGNORECASE}}" \
	    -v keylim="$${keylim:-${PORTSEARCH_KEYLIM}}" \
	    -v xkeylim="$${xkeylim:-${PORTSEARCH_XKEYLIM}}" \
	    -v display="$${display:-${PORTSEARCH_DISPLAY_FIELDS}}" \
	    -v xdisplay="$$xdisplay" \
	'BEGIN { \
            gsub(/\+/,"\\+",name); \
	    if (substr(there, 1, length(top)) == top) \
	      there = "${PORTSDIR}" substr(there, 1 + length(top)); \
	    therelen = length(there); \
	    keylen = length(key); keylim = keylim && keylen; \
	    if (!keylim && keylen) \
	      parms[0] = (icase ? tolower(key) : key); \
	    xkeylen = length(xkey); xkeylim = xkeylim && xkeylen; \
	    if (!xkeylim && xkeylen) \
	      xparms[0] = (icase ? tolower(xkey) : xkey); \
		if (icase) { \
	    if (length(name))  parms[1]  = tolower(name);  if (length(xname))  xparms[1]  = tolower(xname); \
	    if (length(path))  parms[2]  = tolower(path);  if (length(xpath))  xparms[2]  = tolower(xpath); \
	    if (length(info))  parms[4]  = tolower(info);  if (length(xinfo))  xparms[4]  = tolower(xinfo); \
	    if (length(maint)) parms[6]  = tolower(maint); if (length(xmaint)) xparms[6]  = tolower(xmaint); \
	    if (length(cat))   parms[7]  = tolower(cat);   if (length(xcat))   xparms[7]  = tolower(xcat); \
	    if (length(bdeps)) parms[8]  = tolower(bdeps); if (length(xbdeps)) xparms[8]  = tolower(xbdeps); \
	    if (length(rdeps)) parms[9]  = tolower(rdeps); if (length(xrdeps)) xparms[9]  = tolower(xrdeps); \
	    if (length(www))   parms[10] = tolower(www);   if (length(xwww))   xparms[10] = tolower(xwww); \
	  } else { \
	    if (length(name))  parms[1]  = name;  if (length(xname))  xparms[1]  = xname; \
	    if (length(path))  parms[2]  = path;  if (length(xpath))  xparms[2]  = xpath; \
	    if (length(info))  parms[4]  = info;  if (length(xinfo))  xparms[4]  = xinfo; \
	    if (length(maint)) parms[6]  = maint; if (length(xmaint)) xparms[6]  = xmaint; \
	    if (length(cat))   parms[7]  = cat;   if (length(xcat))   xparms[7]  = xcat; \
	    if (length(bdeps)) parms[8]  = bdeps; if (length(xbdeps)) xparms[8]  = xbdeps; \
	    if (length(rdeps)) parms[9]  = rdeps; if (length(xrdeps)) xparms[9]  = xrdeps; \
	    if (length(www))   parms[10] = www;   if (length(xwww))   xparms[10] = xwww; \
	  } \
	    fields["name"]  = 1;  names[1]  = "Port"; \
	    fields["path"]  = 2;  names[2]  = "Path"; \
	    fields["info"]  = 4;  names[4]  = "Info"; \
	    fields["maint"] = 6;  names[6]  = "Maint"; \
	    fields["cat"]   = 7;  names[7]  = "Index"; \
	    fields["bdeps"] = 8;  names[8]  = "B-deps"; \
	    fields["rdeps"] = 9;  names[9]  = "R-deps"; \
	    fields["www"]   = 10; names[10] = "WWW"; \
	    split(display, d, /,[ \t]*/); \
	    split(xdisplay, xd, /,[ \t]*/); \
	    for (i in d) { \
            toprint = 1; \
	      for (j in xd) { \
                if (d[i] == xd[j] ) { \
                       toprint=0; \
                       break; \
                 }\
	      } \
	    if (toprint == 1 ) disp[fields[d[i]]] = 1; \
	    } \
	  } \
	  { \
	    if (match($$2, "^/usr/ports/[^/]*/[^/]*$$") > 0) \
	      sub("^/usr/ports", "${PORTSDIR}", $$2); \
	    if (substr($$2, 1, therelen) != there) \
	      next; \
	    for (i in parms) \
	      if ((icase ? tolower($$i) : $$i) !~ parms[i]) \
	        next; \
	    for (i in xparms) \
	      if ((icase ? tolower($$i) : $$i) ~ xparms[i]) \
	        next; \
	    found = 0; \
	    for (i = 1; i < 11; i++) \
	      if (i in disp) { \
	        if (xkeylim && (icase ? tolower($$i) : $$i) ~ xkey) \
	          next; \
	        if (!found && keylim && (icase ? tolower($$i) : $$i) ~ key) \
	          found = 1; \
	      } \
	    if (keylim && !found) \
	      next; \
	    for (i = 1; i < 11; i++) \
	      if (i in disp) \
	        printf("%s:\t%s\n", names[i], $$i); \
	    print(""); \
	  }' ${INDEXDIR}/${INDEXFILE}; \
	  if [ "$$name" -o "$$xname" ] && [ ${PORTSEARCH_MOVED} -gt 0 ]; \
	  then \
	    ${AWK} -F\| -v name="$$name"        -v xname="$$xname" \
	        -v icase="$${icase:-${PORTSEARCH_IGNORECASE}}" \
	    'BEGIN { \
	        if (icase) { \
	    	if (length(name))  name = tolower(name);  if (length(xname))  xname = tolower(xname); \
	        } \
	        fields["name"]  = 1;  names[1]  = "Port"; \
	        fields["destination"]  = 2;  names[2]  = "Moved"; \
	        fields["date"]  = 3;  names[3]  = "Date"; \
	        fileds["reason"] = 4;  names[4] = "Reason"; \
	     } \
	    { \
		oldname = $$1;  newname = $$2; \
		if (oldname ~ /^\#/) next; \
		sub(".*\/", "", oldname);  newname = sub(".*\/", "", newname); \
	        if (((icase ? tolower(oldname) : oldname) ~ name) || \
		  ((icase ? tolower(newname) : newname) ~ name)) { \
	    	    for (i = 1; i <= 4; i++) { \
	    		printf("%s:\t%s\n", names[i], $$i); \
	    	    } \
	        print(""); \
	        } \
	    }' ${MOVEDDIR}/${MOVEDFILE}; \
	  fi \
	fi 

search:
	@${_PORTSEARCH}

quicksearch:
	@export display="name,path,info" ; \
	${_PORTSEARCH}
s'>+3</span></td></tr>
<tr><td class='commitgraph'>* </td><td><a href='/~lantw44/cgit/cgit.cgi/freebsd-ports-gnome/commit/biology?h=gstreamer0.10-removal&amp;id=9f68fb71ef906c9dd6ecddb64dafc8166565a745'>devel/boost-*: update to 1.63.0</a></td><td>jbeich</td><td><span title='2017-01-06 16:45:03 +0800'>2017-01-06</span></td><td>1</td><td><span class='deletions'>-1</span>/<span class='insertions'>+1</span></td></tr>
<tr><td class='commitgraph'>* </td><td><a href='/~lantw44/cgit/cgit.cgi/freebsd-ports-gnome/commit/biology?h=gstreamer0.10-removal&amp;id=2c3a1094385fb111645369282e3419767d925860'>Never set WRKSRC when using USE_GITHUB.</a></td><td>mat</td><td><span title='2017-01-04 02:12:13 +0800'>2017-01-04</span></td><td>2</td><td><span class='deletions'>-4</span>/<span class='insertions'>+0</span></td></tr>
<tr><td class='commitgraph'>* </td><td><a href='/~lantw44/cgit/cgit.cgi/freebsd-ports-gnome/commit/biology?h=gstreamer0.10-removal&amp;id=35c2e924fb42c40faceb06c6ff4d7a400a8ddea2'>Assume "pkg-config zlib" works after 9.x reached EOL</a></td><td>jbeich</td><td><span title='2017-01-04 01:06:49 +0800'>2017-01-04</span></td><td>1</td><td><span class='deletions'>-3</span>/<span class='insertions'>+0</span></td></tr>
<tr><td class='commitgraph'>* </td><td><a href='/~lantw44/cgit/cgit.cgi/freebsd-ports-gnome/commit/biology?h=gstreamer0.10-removal&amp;id=186438d146a394b729a7b139b9ec68187245cbf3'>Remove BROKEN_FreeBSD_9</a></td><td>sunpoet</td><td><span title='2017-01-01 11:45:12 +0800'>2017-01-01</span></td><td>2</td><td><span class='deletions'>-3</span>/<span class='insertions'>+0</span></td></tr>
<tr><td class='commitgraph'>* </td><td><a href='/~lantw44/cgit/cgit.cgi/freebsd-ports-gnome/commit/biology?h=gstreamer0.10-removal&amp;id=b5b2bb624875045eadc0dcb94fd9b9a3ad201471'>biology/diamond: Update to version 0.8.30</a></td><td>jrm</td><td><span title='2016-12-31 00:27:25 +0800'>2016-12-31</span></td><td>2</td><td><span class='deletions'>-4</span>/<span class='insertions'>+4</span></td></tr>
<tr><td class='commitgraph'>* </td><td><a href='/~lantw44/cgit/cgit.cgi/freebsd-ports-gnome/commit/biology?h=gstreamer0.10-removal&amp;id=b5df3ffb416d80585d431e2884dfae53918242e8'>biology/ncbi-blast+: Add MAKE_JOBS_UNSAFE</a></td><td>jrm</td><td><span title='2016-12-23 00:49:16 +0800'>2016-12-23</span></td><td>1</td><td><span class='deletions'>-0</span>/<span class='insertions'>+2</span></td></tr>
<tr><td class='commitgraph'>* </td><td><a href='/~lantw44/cgit/cgit.cgi/freebsd-ports-gnome/commit/biology?h=gstreamer0.10-removal&amp;id=3506056c1cb8266235fd019d17cc23eef68c11b0'>- Update to 1.007001</a></td><td>sunpoet</td><td><span title='2016-12-21 02:35:26 +0800'>2016-12-21</span></td><td>2</td><td><span class='deletions'>-4</span>/<span class='insertions'>+4</span></td></tr>
<tr><td class='commitgraph'>* </td><td><a href='/~lantw44/cgit/cgit.cgi/freebsd-ports-gnome/commit/biology?h=gstreamer0.10-removal&amp;id=d15a681e7dcf584d111cd994c49f3d38d8c15440'>biology/bowtie2: Update to version 2.2.9</a></td><td>jrm</td><td><span title='2016-12-21 01:01:27 +0800'>2016-12-21</span></td><td>2</td><td><span class='deletions'>-14</span>/<span class='insertions'>+18</span></td></tr>
<tr><td class='commitgraph'>* </td><td><a href='/~lantw44/cgit/cgit.cgi/freebsd-ports-gnome/commit/biology?h=gstreamer0.10-removal&amp;id=c653a0a663f3160d532e2b1fbbfd7edc7c9fc318'>biology/cd-hit: Update to bug-fix release 4.6.6</a></td><td>jrm</td><td><span title='2016-12-21 00:48:12 +0800'>2016-12-21</span></td><td>2</td><td><span class='deletions'>-5</span>/<span class='insertions'>+4</span></td></tr>
<tr><td class='commitgraph'>* </td><td><a href='/~lantw44/cgit/cgit.cgi/freebsd-ports-gnome/commit/biology?h=gstreamer0.10-removal&amp;id=4ecbc49241a833aabd18450bd14ccc9f388f82f6'>biology/jellyfish: Update to version 2.2.6</a></td><td>jrm</td><td><span title='2016-12-20 00:52:34 +0800'>2016-12-20</span></td><td>3</td><td><span class='deletions'>-54</span>/<span class='insertions'>+56</span></td></tr>
<tr><td class='commitgraph'>* </td><td><a href='/~lantw44/cgit/cgit.cgi/freebsd-ports-gnome/commit/biology?h=gstreamer0.10-removal&amp;id=df2841a589a5b5c4fb2f69d55db87becf9f1a49b'>- Update *_DEPENDS: Bio::Coordinate family has been moved from biology/p5-Bio...</a></td><td>sunpoet</td><td><span title='2016-12-19 23:54:43 +0800'>2016-12-19</span></td><td>1</td><td><span class='deletions'>-2</span>/<span class='insertions'>+4</span></td></tr>
<tr><td class='commitgraph'>* </td><td><a href='/~lantw44/cgit/cgit.cgi/freebsd-ports-gnome/commit/biology?h=gstreamer0.10-removal&amp;id=3f73231b7721d11baf60d59d111c6f3bf665e087'>- Add p5-Bio-Coordinate 1.007001</a></td><td>sunpoet</td><td><span title='2016-12-19 23:54:39 +0800'>2016-12-19</span></td><td>5</td><td><span class='deletions'>-0</span>/<span class='insertions'>+58</span></td></tr>
<tr><td class='commitgraph'>* </td><td><a href='/~lantw44/cgit/cgit.cgi/freebsd-ports-gnome/commit/biology?h=gstreamer0.10-removal&amp;id=28ed756218d73e709c263fed6bd9b639554fa003'>- Update to 1.007000</a></td><td>sunpoet</td><td><span title='2016-12-19 23:54:34 +0800'>2016-12-19</span></td><td>4</td><td><span class='deletions'>-20</span>/<span class='insertions'>+29</span></td></tr>
<tr><td class='commitgraph'>* </td><td><a href='/~lantw44/cgit/cgit.cgi/freebsd-ports-gnome/commit/biology?h=gstreamer0.10-removal&amp;id=fdb1e2186ccff7dc24af6ce3555f7323126b7efa'>- Update to 1.007001</a></td><td>sunpoet</td><td><span title='2016-12-19 23:54:29 +0800'>2016-12-19</span></td><td>6</td><td><span class='deletions'>-383</span>/<span class='insertions'>+180</span></td></tr>
<tr><td class='commitgraph'>* </td><td><a href='/~lantw44/cgit/cgit.cgi/freebsd-ports-gnome/commit/biology?h=gstreamer0.10-removal&amp;id=7eb61fd9116861fcc9d4e468b0d962531e425e18'>- Update to 2.5.0</a></td><td>wen</td><td><span title='2016-12-19 11:26:54 +0800'>2016-12-19</span></td><td>5</td><td><span class='deletions'>-68</span>/<span class='insertions'>+190</span></td></tr>
<tr><td class='commitgraph'>* </td><td><a href='/~lantw44/cgit/cgit.cgi/freebsd-ports-gnome/commit/biology?h=gstreamer0.10-removal&amp;id=c22d42c856a20a8422c8d45fc53926334cb1003f'>- Update to 2.40</a></td><td>sunpoet</td><td><span title='2016-12-18 23:26:11 +0800'>2016-12-18</span></td><td>3</td><td><span class='deletions'>-10</span>/<span class='insertions'>+22</span></td></tr>
<tr><td class='commitgraph'>* </td><td><a href='/~lantw44/cgit/cgit.cgi/freebsd-ports-gnome/commit/biology?h=gstreamer0.10-removal&amp;id=2d54fbbc08a70686d3d3c1234bc14a58a7d97c01'>- Move biology/p5-bioperl-run to biology/p5-BioPerl-Run</a></td><td>sunpoet</td><td><span title='2016-12-18 23:25:44 +0800'>2016-12-18</span></td><td>6</td><td><span class='deletions'>-8</span>/<span class='insertions'>+10</span></td></tr>
<tr><td class='commitgraph'>* </td><td><a href='/~lantw44/cgit/cgit.cgi/freebsd-ports-gnome/commit/biology?h=gstreamer0.10-removal&amp;id=964b9cb91678f491c9c816518937756a75432ac6'>- Add LICENSE_FILE</a></td><td>sunpoet</td><td><span title='2016-12-18 23:25:22 +0800'>2016-12-18</span></td><td>1</td><td><span class='deletions'>-2</span>/<span class='insertions'>+5</span></td></tr>
<tr><td class='commitgraph'>* </td><td><a href='/~lantw44/cgit/cgit.cgi/freebsd-ports-gnome/commit/biology?h=gstreamer0.10-removal&amp;id=cc5f942d92a837972eb77f263d53af08ff1f4408'>- Add LICENSE</a></td><td>sunpoet</td><td><span title='2016-12-18 23:25:18 +0800'>2016-12-18</span></td><td>1</td><td><span class='deletions'>-4</span>/<span class='insertions'>+8</span></td></tr>
<tr><td class='commitgraph'>* </td><td><a href='/~lantw44/cgit/cgit.cgi/freebsd-ports-gnome/commit/biology?h=gstreamer0.10-removal&amp;id=720e1c48862e9fdeebbb15cbe2f08179afe965ef'>- Add LICENSE</a></td><td>sunpoet</td><td><span title='2016-12-18 23:25:13 +0800'>2016-12-18</span></td><td>1</td><td><span class='deletions'>-1</span>/<span class='insertions'>+7</span></td></tr>
<tr><td class='commitgraph'>* </td><td><a href='/~lantw44/cgit/cgit.cgi/freebsd-ports-gnome/commit/biology?h=gstreamer0.10-removal&amp;id=b2222f27ae7b17c43e975967c27254a1e8d1fd7c'>- Move biology/p5-bioperl to biology/p5-BioPerl</a></td><td>sunpoet</td><td><span title='2016-12-18 23:25:04 +0800'>2016-12-18</span></td><td>7</td><td><span class='deletions'>-9</span>/<span class='insertions'>+7</span></td></tr>
<tr><td class='commitgraph'>* </td><td><a href='/~lantw44/cgit/cgit.cgi/freebsd-ports-gnome/commit/biology?h=gstreamer0.10-removal&amp;id=42a4a8b7b1faea41be3ba15a595604fe1e95c48d'>biology/diamond: Update to version 0.8.29</a></td><td>jrm</td><td><span title='2016-12-18 21:52:32 +0800'>2016-12-18</span></td><td>2</td><td><span class='deletions'>-4</span>/<span class='insertions'>+4</span></td></tr>
<tr><td class='commitgraph'>* </td><td><a href='/~lantw44/cgit/cgit.cgi/freebsd-ports-gnome/commit/biology?h=gstreamer0.10-removal&amp;id=dde5761b57b257d378f42f852a59f8589b18a74b'>biology/protomol: Support build with C++11 (taken from dports)</a></td><td>marino</td><td><span title='2016-12-18 13:34:42 +0800'>2016-12-18</span></td><td>5</td><td><span class='deletions'>-0</span>/<span class='insertions'>+48</span></td></tr>
<tr><td class='commitgraph'>* </td><td><a href='/~lantw44/cgit/cgit.cgi/freebsd-ports-gnome/commit/biology?h=gstreamer0.10-removal&amp;id=883325d4267340b966c9198a4c92090b60deeab4'>biology/blat: Fix build on DF (taken from dports)</a></td><td>marino</td><td><span title='2016-12-18 12:46:53 +0800'>2016-12-18</span></td><td>1</td><td><span class='deletions'>-0</span>/<span class='insertions'>+14</span></td></tr>
<tr><td class='commitgraph'>* </td><td><a href='/~lantw44/cgit/cgit.cgi/freebsd-ports-gnome/commit/biology?h=gstreamer0.10-removal&amp;id=026228d2245081f3e5100791c02b559aed6161fb'>biology/lamarc: Fix build on DF (taken from dports)</a></td><td>marino</td><td><span title='2016-12-18 12:34:33 +0800'>2016-12-18</span></td><td>1</td><td><span class='deletions'>-0</span>/<span class='insertions'>+11</span></td></tr>
<tr><td class='commitgraph'>* </td><td><a href='/~lantw44/cgit/cgit.cgi/freebsd-ports-gnome/commit/biology?h=gstreamer0.10-removal&amp;id=ecaa4cfd9641770fe3e37f294fe9b6084b09a473'>biology/chemeq: fix build on GCC (taken from dports)</a></td><td>marino</td><td><span title='2016-12-18 12:22:26 +0800'>2016-12-18</span></td><td>1</td><td><span class='deletions'>-0</span>/<span class='insertions'>+11</span></td></tr>
<tr><td class='commitgraph'>* </td><td><a href='/~lantw44/cgit/cgit.cgi/freebsd-ports-gnome/commit/biology?h=gstreamer0.10-removal&amp;id=2ef17bdc60d4e35e667b9be8b7710162bc8eeb9e'>Remove libintl.so.9 compatibility link that was added in r374303 to</a></td><td>tijl</td><td><span title='2016-12-09 03:52:19 +0800'>2016-12-09</span></td><td>3</td><td><span class='deletions'>-2</span>/<span class='insertions'>+3</span></td></tr>
<tr><td class='commitgraph'>* </td><td><a href='/~lantw44/cgit/cgit.cgi/freebsd-ports-gnome/commit/biology?h=gstreamer0.10-removal&amp;id=24f1021eb22e46fde724ad8dff4a0304ad3b792f'>Remove libjpeg.so.11 compatibility link that was added in r374303 to</a></td><td>tijl</td><td><span title='2016-12-09 00:39:11 +0800'>2016-12-09</span></td><td>1</td><td><span class='deletions'>-0</span>/<span class='insertions'>+1</span></td></tr>
<tr><td class='commitgraph'>* </td><td><a href='/~lantw44/cgit/cgit.cgi/freebsd-ports-gnome/commit/biology?h=gstreamer0.10-removal&amp;id=62ddc3e0d540c5e473189ec319669a989aaffa08'>Bump PORTREVISIONS for ports depending on the canonical version of GCC and</a></td><td>gerald</td><td><span title='2016-12-07 21:24:56 +0800'>2016-12-07</span></td><td>7</td><td><span class='deletions'>-5</span>/<span class='insertions'>+7</span></td></tr>
<tr><td class='commitgraph'>* </td><td><a href='/~lantw44/cgit/cgit.cgi/freebsd-ports-gnome/commit/biology?h=gstreamer0.10-removal&amp;id=ff5b74fd264fc3516a8eb40dd7b15ebb5271ef39'>biology/molden: distfile was updated in xwin.c</a></td><td>pi</td><td><span title='2016-12-04 01:03:42 +0800'>2016-12-04</span></td><td>2</td><td><span class='deletions'>-4</span>/<span class='insertions'>+4</span></td></tr>
<tr><td class='commitgraph'>* </td><td><a href='/~lantw44/cgit/cgit.cgi/freebsd-ports-gnome/commit/biology?h=gstreamer0.10-removal&amp;id=8f4d478e0d67ed7e9570dc79cf876a62a43a852b'>Do not use post-stage.  Use post-install instead.</a></td><td>mat</td><td><span title='2016-12-02 19:58:21 +0800'>2016-12-02</span></td><td>1</td><td><span class='deletions'>-1</span>/<span class='insertions'>+1</span></td></tr>
<tr><td class='commitgraph'>* </td><td><a href='/~lantw44/cgit/cgit.cgi/freebsd-ports-gnome/commit/biology?h=gstreamer0.10-removal&amp;id=40f71a8b16a5b4fa53a8439150d51b158856933a'>biology/njplot: Add site in MASTER_SITES because package builders are</a></td><td>jrm</td><td><span title='2016-11-28 23:19:42 +0800'>2016-11-28</span></td><td>1</td><td><span class='deletions'>-2</span>/<span class='insertions'>+4</span></td></tr>
<tr><td class='commitgraph'>* </td><td><a href='/~lantw44/cgit/cgit.cgi/freebsd-ports-gnome/commit/biology?h=gstreamer0.10-removal&amp;id=658a37e4bf00c9fe1350adc7321b130e72d42dff'>biology/diamond: Update to version 0.8.28</a></td><td>jrm</td><td><span title='2016-11-28 23:18:14 +0800'>2016-11-28</span></td><td>2</td><td><span class='deletions'>-5</span>/<span class='insertions'>+6</span></td></tr>
<tr><td class='commitgraph'>* </td><td><a href='/~lantw44/cgit/cgit.cgi/freebsd-ports-gnome/commit/biology?h=gstreamer0.10-removal&amp;id=d34908d4c7b2cf64d52a2c32986145d647eb2f35'>Fixup USE_GITHUB usage.</a></td><td>mat</td><td><span title='2016-11-26 18:09:54 +0800'>2016-11-26</span></td><td>2</td><td><span class='deletions'>-3</span>/<span class='insertions'>+3</span></td></tr>
<tr><td class='commitgraph'>* </td><td><a href='/~lantw44/cgit/cgit.cgi/freebsd-ports-gnome/commit/biology?h=gstreamer0.10-removal&amp;id=5ebb08b847ae4db7010dd0638e4c32691ddb7751'>Replace USE_GCC=4.9+ by USE_GCC=yes, now that lang/gcc and the default</a></td><td>gerald</td><td><span title='2016-11-26 05:27:37 +0800'>2016-11-26</span></td><td>1</td><td><span class='deletions'>-1</span>/<span class='insertions'>+1</span></td></tr>
<tr><td class='commitgraph'>* </td><td><a href='/~lantw44/cgit/cgit.cgi/freebsd-ports-gnome/commit/biology?h=gstreamer0.10-removal&amp;id=3c5cf0a44299e8b909fd3062e8aa0cc710649894'>devel/boost-*: update to 1.62.0</a></td><td>jbeich</td><td><span title='2016-11-23 20:45:46 +0800'>2016-11-23</span></td><td>1</td><td><span class='deletions'>-0</span>/<span class='insertions'>+1</span></td></tr>
<tr><td class='commitgraph'>* </td><td><a href='/~lantw44/cgit/cgit.cgi/freebsd-ports-gnome/commit/biology?h=gstreamer0.10-removal&amp;id=18e48334b66eddb23b14c462045366df1960fcb2'>- Remove unnecessary USES=shebangfix</a></td><td>sunpoet</td><td><span title='2016-11-21 07:56:14 +0800'>2016-11-21</span></td><td>1</td><td><span class='deletions'>-4</span>/<span class='insertions'>+8</span></td></tr>
<tr><td class='commitgraph'>* </td><td><a href='/~lantw44/cgit/cgit.cgi/freebsd-ports-gnome/commit/biology?h=gstreamer0.10-removal&amp;id=db5f30a44b64f57dc79943bd0353111f9146dadc'>Bump PORTREVISIONS for ports depending on the canonical version of GCC and</a></td><td>gerald</td><td><span title='2016-11-20 17:38:08 +0800'>2016-11-20</span></td><td>5</td><td><span class='deletions'>-2</span>/<span class='insertions'>+5</span></td></tr>
<tr><td class='commitgraph'>* </td><td><a href='/~lantw44/cgit/cgit.cgi/freebsd-ports-gnome/commit/biology?h=gstreamer0.10-removal&amp;id=f52aa8597ba4e65ae25ea8d95ab361b28281a8d4'>biology/avida: Fix ncurses from ports support</a></td><td>marino</td><td><span title='2016-11-19 22:56:46 +0800'>2016-11-19</span></td><td>1</td><td><span class='deletions'>-1</span>/<span class='insertions'>+3</span></td></tr>
<tr><td class='commitgraph'>* </td><td><a href='/~lantw44/cgit/cgit.cgi/freebsd-ports-gnome/commit/biology?h=gstreamer0.10-removal&amp;id=39b2d3f21eb1c6c9585dc7abbb6b22024e2e6b5c'>biology/njplot: Revive and update to version 2.4</a></td><td>jrm</td><td><span title='2016-11-16 22:52:53 +0800'>2016-11-16</span></td><td>5</td><td><span class='deletions'>-0</span>/<span class='insertions'>+109</span></td></tr>
<tr><td class='commitgraph'>* </td><td><a href='/~lantw44/cgit/cgit.cgi/freebsd-ports-gnome/commit/biology?h=gstreamer0.10-removal&amp;id=5cdb4ed927a22bd39a18f14a725336de16d127b4'>Mark various leaf ports broken on aarch64, and, where appropriate, other</a></td><td>linimon</td><td><span title='2016-11-11 17:31:02 +0800'>2016-11-11</span></td><td>4</td><td><span class='deletions'>-2</span>/<span class='insertions'>+8</span></td></tr>
<tr><td class='commitgraph'>* </td><td><a href='/~lantw44/cgit/cgit.cgi/freebsd-ports-gnome/commit/biology?h=gstreamer0.10-removal&amp;id=95d19776f05f9440c1026c6139c40ffd9f1bac5a'>Attempt to fix build on non-x86 archs.</a></td><td>linimon</td><td><span title='2016-11-11 17:07:21 +0800'>2016-11-11</span></td><td>1</td><td><span class='deletions'>-3</span>/<span class='insertions'>+5</span></td></tr>
<tr><td class='commitgraph'>* </td><td><a href='/~lantw44/cgit/cgit.cgi/freebsd-ports-gnome/commit/biology?h=gstreamer0.10-removal&amp;id=5d4bc4154d578047080ddedcfd6232ee177d9710'>biology/seqtools: update 4.43.0 -&gt; 4.44.1</a></td><td>pi</td><td><span title='2016-11-11 14:19:10 +0800'>2016-11-11</span></td><td>3</td><td><span class='deletions'>-4</span>/<span class='insertions'>+14</span></td></tr>
<tr><td class='commitgraph'>* </td><td><a href='/~lantw44/cgit/cgit.cgi/freebsd-ports-gnome/commit/biology?h=gstreamer0.10-removal&amp;id=db28fed2ca5a1aa6ac167bcb0280f42fbf70086d'>biology/molden: add missing LICENSE_NAME</a></td><td>pi</td><td><span title='2016-11-10 13:13:02 +0800'>2016-11-10</span></td><td>1</td><td><span class='deletions'>-1</span>/<span class='insertions'>+2</span></td></tr>
<tr><td class='commitgraph'>* </td><td><a href='/~lantw44/cgit/cgit.cgi/freebsd-ports-gnome/commit/biology?h=gstreamer0.10-removal&amp;id=654ac5bd66dfcd8aa5f5dc81a0374eaa9160f242'>biology/molden: fix distinfo, set LICENSE</a></td><td>pi</td><td><span title='2016-11-10 04:49:57 +0800'>2016-11-10</span></td><td>2</td><td><span class='deletions'>-7</span>/<span class='insertions'>+11</span></td></tr>
<tr><td class='commitgraph'>* </td><td><a href='/~lantw44/cgit/cgit.cgi/freebsd-ports-gnome/commit/biology?h=gstreamer0.10-removal&amp;id=87a7b35e945e862f9776dd576475d8dec4da8d7d'>The 64-bit arm arch is actually spelled 'aarch64', not 'arm64'.</a></td><td>linimon</td><td><span title='2016-11-09 03:29:56 +0800'>2016-11-09</span></td><td>3</td><td><span class='deletions'>-3</span>/<span class='insertions'>+3</span></td></tr>
<tr><td class='commitgraph'>* </td><td><a href='/~lantw44/cgit/cgit.cgi/freebsd-ports-gnome/commit/biology?h=gstreamer0.10-removal&amp;id=69dce21b890d0eb71fe372404655001a6ab8f6ae'>Mark as broken on arm64.</a></td><td>linimon</td><td><span title='2016-11-08 15:20:38 +0800'>2016-11-08</span></td><td>1</td><td><span class='deletions'>-0</span>/<span class='insertions'>+2</span></td></tr>
<tr><td class='commitgraph'>* </td><td><a href='/~lantw44/cgit/cgit.cgi/freebsd-ports-gnome/commit/biology?h=gstreamer0.10-removal&amp;id=3495affef9cec37946c3353813ccc916d2b896b2'>Mark broken on all tier-2 archs.</a></td><td>linimon</td><td><span title='2016-11-08 11:40:15 +0800'>2016-11-08</span></td><td>1</td><td><span class='deletions'>-0</span>/<span class='insertions'>+3</span></td></tr>
<tr><td class='commitgraph'>* </td><td><a href='/~lantw44/cgit/cgit.cgi/freebsd-ports-gnome/commit/biology?h=gstreamer0.10-removal&amp;id=024ec62fe3a350f8cb791541d098ae71c107ed21'>Mark broken on the rest of the tier-2 archs: invokes x86 asm.</a></td><td>linimon</td><td><span title='2016-11-08 10:48:00 +0800'>2016-11-08</span></td><td>1</td><td><span class='deletions'>-1</span>/<span class='insertions'>+4</span></td></tr>
<tr><td class='commitgraph'>* </td><td><a href='/~lantw44/cgit/cgit.cgi/freebsd-ports-gnome/commit/biology?h=gstreamer0.10-removal&amp;id=2b9ce26ccb6a975353df02541f4584810374ae07'>biology/diamond: Update to version 0.8.26</a></td><td>jrm</td><td><span title='2016-11-06 13:42:32 +0800'>2016-11-06</span></td><td>2</td><td><span class='deletions'>-4</span>/<span class='insertions'>+4</span></td></tr>
<tr><td class='commitgraph'>* </td><td><a href='/~lantw44/cgit/cgit.cgi/freebsd-ports-gnome/commit/biology?h=gstreamer0.10-removal&amp;id=d9ec328e16b795889ee8d72196228f00a0a3393a'>Cleanup no longer needed CHMOD usage after r424898.</a></td><td>mat</td><td><span title='2016-11-03 06:45:14 +0800'>2016-11-03</span></td><td>4</td><td><span class='deletions'>-12</span>/<span class='insertions'>+5</span></td></tr>
<tr><td class='commitgraph'>* </td><td><a href='/~lantw44/cgit/cgit.cgi/freebsd-ports-gnome/commit/biology?h=gstreamer0.10-removal&amp;id=43d1e0f4b085e56498e105cc392234e1f099c6f8'>- Mark it BROKEN</a></td><td>wen</td><td><span title='2016-10-28 09:49:40 +0800'>2016-10-28</span></td><td>1</td><td><span class='deletions'>-1</span>/<span class='insertions'>+3</span></td></tr>
<tr><td class='commitgraph'>* </td><td><a href='/~lantw44/cgit/cgit.cgi/freebsd-ports-gnome/commit/biology?h=gstreamer0.10-removal&amp;id=60e51bda11dcc0742419f2a459990d0d81cb07d8'>Use USES=pathfix where applicable.</a></td><td>mat</td><td><span title='2016-10-21 23:21:13 +0800'>2016-10-21</span></td><td>4</td><td><span class='deletions'>-21</span>/<span class='insertions'>+11</span></td></tr>
<tr><td class='commitgraph'>* </td><td><a href='/~lantw44/cgit/cgit.cgi/freebsd-ports-gnome/commit/biology?h=gstreamer0.10-removal&amp;id=316cf6317eb621c4567d3b8e337fa9ba3097ea56'>${RM} already has -f.</a></td><td>mat</td><td><span title='2016-10-21 20:51:40 +0800'>2016-10-21</span></td><td>3</td><td><span class='deletions'>-3</span>/<span class='insertions'>+3</span></td></tr>
<tr><td class='commitgraph'>* </td><td><a href='/~lantw44/cgit/cgit.cgi/freebsd-ports-gnome/commit/biology?h=gstreamer0.10-removal&amp;id=8b72e435046a162ceb85f7d6b1703ff322686a65'>biology/diamond: update to version 0.8.24</a></td><td>jrm</td><td><span title='2016-10-17 22:17:18 +0800'>2016-10-17</span></td><td>2</td><td><span class='deletions'>-4</span>/<span class='insertions'>+4</span></td></tr>
<tr><td class='commitgraph'>* </td><td><a href='/~lantw44/cgit/cgit.cgi/freebsd-ports-gnome/commit/biology?h=gstreamer0.10-removal&amp;id=c67af14da5dd321c5bf1c1582d1a502e41b25ec9'>biology/diamond: update to version 0.8.23</a></td><td>jrm</td><td><span title='2016-10-10 12:33:16 +0800'>2016-10-10</span></td><td>2</td><td><span class='deletions'>-4</span>/<span class='insertions'>+4</span></td></tr>
<tr><td class='commitgraph'>* </td><td><a href='/~lantw44/cgit/cgit.cgi/freebsd-ports-gnome/commit/biology?h=gstreamer0.10-removal&amp;id=794e36c9cb227d83f30056439b42ef6e07db2973'>Mark BROKEN: unfetchable, size mismatch</a></td><td>antoine</td><td><span title='2016-10-01 16:02:20 +0800'>2016-10-01</span></td><td>1</td><td><span class='deletions'>-0</span>/<span class='insertions'>+1</span></td></tr>
<tr><td class='commitgraph'>* </td><td><a href='/~lantw44/cgit/cgit.cgi/freebsd-ports-gnome/commit/biology?h=gstreamer0.10-removal&amp;id=0ba12ce49f761cd7fe380a600b08fca7f146a246'>biology/blat: Fix build with non-base SSL</a></td><td>marino</td><td><span title='2016-10-01 03:40:13 +0800'>2016-10-01</span></td><td>1</td><td><span class='deletions'>-4</span>/<span class='insertions'>+4</span></td></tr>
<tr><td class='commitgraph'>* </td><td><a href='/~lantw44/cgit/cgit.cgi/freebsd-ports-gnome/commit/biology?h=gstreamer0.10-removal&amp;id=90679458aad0b481fa9c8748e103459e8574f474'>Update PORTREVISION and dinstinfo due to upstream tarball change</a></td><td>jrm</td><td><span title='2016-09-30 05:12:50 +0800'>2016-09-30</span></td><td>2</td><td><span class='deletions'>-3</span>/<span class='insertions'>+4</span></td></tr>
<tr><td class='commitgraph'>* </td><td><a href='/~lantw44/cgit/cgit.cgi/freebsd-ports-gnome/commit/biology?h=gstreamer0.10-removal&amp;id=b0d0f5163e77afc24d8eba4ac2bcaff317849a62'>biology/paml: update to version 4.9c and various improvements</a></td><td>jrm</td><td><span title='2016-09-28 10:30:29 +0800'>2016-09-28</span></td><td>4</td><td><span class='deletions'>-33</span>/<span class='insertions'>+48</span></td></tr>
<tr><td class='commitgraph'>* </td><td><a href='/~lantw44/cgit/cgit.cgi/freebsd-ports-gnome/commit/biology?h=gstreamer0.10-removal&amp;id=adbee0ba4165f39428b7ffd756b4c22b751d70f5'>Update email address to jrm@FreeBSD.org for ports that I maintain</a></td><td>jrm</td><td><span title='2016-09-24 05:42:02 +0800'>2016-09-24</span></td><td>3</td><td><span class='deletions'>-5</span>/<span class='insertions'>+3</span></td></tr>
<tr><td class='commitgraph'>* </td><td><a href='/~lantw44/cgit/cgit.cgi/freebsd-ports-gnome/commit/biology?h=gstreamer0.10-removal&amp;id=b56ee02284f9f34ee4df3e6745e0cbba0b1d4e2f'>- Update to 1.68</a></td><td>wen</td><td><span title='2016-09-23 09:54:45 +0800'>2016-09-23</span></td><td>2</td><td><span class='deletions'>-3</span>/<span class='insertions'>+4</span></td></tr>
<tr><td class='commitgraph'>* </td><td><a href='/~lantw44/cgit/cgit.cgi/freebsd-ports-gnome/commit/biology?h=gstreamer0.10-removal&amp;id=da19840efea8552683cdd8048498ce8699cade3a'>- Update biology/seqan and bilogy/seqan-apps to version 2.2.0 [1]</a></td><td>pawel</td><td><span title='2016-09-15 03:38:58 +0800'>2016-09-15</span></td><td>6</td><td><span class='deletions'>-28</span>/<span class='insertions'>+39</span></td></tr>
<tr><td class='commitgraph'>* </td><td><a href='/~lantw44/cgit/cgit.cgi/freebsd-ports-gnome/commit/biology?h=gstreamer0.10-removal&amp;id=26f4e5927b33637101bdfee46dfcf88f0d5bcfc2'>GOOGLE_CODE has gone away.</a></td><td>mat</td><td><span title='2016-09-14 23:59:34 +0800'>2016-09-14</span></td><td>1</td><td><span class='deletions'>-0</span>/<span class='insertions'>+2</span></td></tr>
<tr><td class='commitgraph'>* </td><td><a href='/~lantw44/cgit/cgit.cgi/freebsd-ports-gnome/commit/biology?h=gstreamer0.10-removal&amp;id=a85d3fd052e3061524caba2d393adb553b1a1585'>- Update to 0.8.22</a></td><td>amdmi3</td><td><span title='2016-09-14 01:50:31 +0800'>2016-09-14</span></td><td>2</td><td><span class='deletions'>-4</span>/<span class='insertions'>+4</span></td></tr>
<tr><td class='commitgraph'>* </td><td><a href='/~lantw44/cgit/cgit.cgi/freebsd-ports-gnome/commit/biology?h=gstreamer0.10-removal&amp;id=1eec7f09f59347216f60f3b161068f4b9421f626'>biology/ncbi-blast+: Remove redundant LIB_DEPENDS (bz2 libary)</a></td><td>marino</td><td><span title='2016-09-11 13:35:42 +0800'>2016-09-11</span></td><td>1</td><td><span class='deletions'>-3</span>/<span class='insertions'>+2</span></td></tr>
<tr><td class='commitgraph'>* </td><td><a href='/~lantw44/cgit/cgit.cgi/freebsd-ports-gnome/commit/biology?h=gstreamer0.10-removal&amp;id=52dccf68b3148ab6accc40e1a9f1fcd0e17fe786'>- Update to 1.72</a></td><td>wen</td><td><span title='2016-09-11 13:26:01 +0800'>2016-09-11</span></td><td>2</td><td><span class='deletions'>-4</span>/<span class='insertions'>+4</span></td></tr>
<tr><td class='commitgraph'>* </td><td><a href='/~lantw44/cgit/cgit.cgi/freebsd-ports-gnome/commit/biology?h=gstreamer0.10-removal&amp;id=6e502d51f3f34690037f4f33bb5cf0f0f50e2ca7'>Most commonly used build systems support silent builds, when they</a></td><td>amdmi3</td><td><span title='2016-09-10 03:42:46 +0800'>2016-09-10</span></td><td>1</td><td><span class='deletions'>-1</span>/<span class='insertions'>+1</span></td></tr>
<tr><td class='commitgraph'>* </td><td><a href='/~lantw44/cgit/cgit.cgi/freebsd-ports-gnome/commit/biology?h=gstreamer0.10-removal&amp;id=87178189d904e6880cf788ce649d920efb5b2dd9'>- Make configure script handle --disable-silent-rules gracefully</a></td><td>amdmi3</td><td><span title='2016-09-06 21:30:48 +0800'>2016-09-06</span></td><td>1</td><td><span class='deletions'>-1</span>/<span class='insertions'>+1</span></td></tr>
<tr><td class='commitgraph'>* </td><td><a href='/~lantw44/cgit/cgit.cgi/freebsd-ports-gnome/commit/biology?h=gstreamer0.10-removal&amp;id=db49e1674ef9a03cf4565052ea656cbea2e1942f'>- Update to 0.8.20</a></td><td>wen</td><td><span title='2016-09-06 14:34:59 +0800'>2016-09-06</span></td><td>2</td><td><span class='deletions'>-4</span>/<span class='insertions'>+4</span></td></tr>
<tr><td class='commitgraph'>* </td><td><a href='/~lantw44/cgit/cgit.cgi/freebsd-ports-gnome/commit/biology?h=gstreamer0.10-removal&amp;id=6255104baacfdd2c23e07550f90d2f9a7020ca87'>- Replace Mk/bsd.linux-apps.mk and Mk/bsd.linux-rpm.mk with</a></td><td>tijl</td><td><span title='2016-09-06 03:23:42 +0800'>2016-09-06</span></td><td>2</td><td><span class='deletions'>-4</span>/<span class='insertions'>+3</span></td></tr>
<tr><td class='commitgraph'>* </td><td><a href='/~lantw44/cgit/cgit.cgi/freebsd-ports-gnome/commit/biology?h=gstreamer0.10-removal&amp;id=02f49161cc526f30de31125f7c4ad70b32bed95e'>biology/molden: 5.4 -&gt; 5.7</a></td><td>pi</td><td><span title='2016-08-26 14:00:47 +0800'>2016-08-26</span></td><td>2</td><td><span class='deletions'>-6</span>/<span class='insertions'>+4</span></td></tr>
<tr><td class='commitgraph'>* </td><td><a href='/~lantw44/cgit/cgit.cgi/freebsd-ports-gnome/commit/biology?h=gstreamer0.10-removal&amp;id=a485653d8c0e5b3c45f5a2fa6c09c1b34b0c7b4d'>Update to version 0.8.19</a></td><td>pawel</td><td><span title='2016-08-26 02:49:12 +0800'>2016-08-26</span></td><td>2</td><td><span class='deletions'>-4</span>/<span class='insertions'>+4</span></td></tr>
<tr><td class='commitgraph'>* </td><td><a href='/~lantw44/cgit/cgit.cgi/freebsd-ports-gnome/commit/biology?h=gstreamer0.10-removal&amp;id=027195f102590b5854c88c6912c9a0b3f437d6fd'>- Mark BROKEN: does not fetch (distfile was removed from ftp)</a></td><td>amdmi3</td><td><span title='2016-08-22 19:06:06 +0800'>2016-08-22</span></td><td>1</td><td><span class='deletions'>-0</span>/<span class='insertions'>+2</span></td></tr>
<tr><td class='commitgraph'>* </td><td><a href='/~lantw44/cgit/cgit.cgi/freebsd-ports-gnome/commit/biology?h=gstreamer0.10-removal&amp;id=0b62219c543d4d1c68d22e899fbe5b8fbb74d038'>biology/bedtools is not jobs safe</a></td><td>marino</td><td><span title='2016-08-22 12:32:18 +0800'>2016-08-22</span></td><td>1</td><td><span class='deletions'>-0</span>/<span class='insertions'>+2</span></td></tr>
<tr><td class='commitgraph'>* </td><td><a href='/~lantw44/cgit/cgit.cgi/freebsd-ports-gnome/commit/biology?h=gstreamer0.10-removal&amp;id=b5db3d10589db818208441d330491eb1769a219a'>- Switch to options helpers</a></td><td>amdmi3</td><td><span title='2016-08-18 17:31:58 +0800'>2016-08-18</span></td><td>3</td><td><span class='deletions'>-16</span>/<span class='insertions'>+11</span></td></tr>
<tr><td class='commitgraph'>* </td><td><a href='/~lantw44/cgit/cgit.cgi/freebsd-ports-gnome/commit/biology?h=gstreamer0.10-removal&amp;id=b093e7dda0aeb5b14981acbcc022d8a04b3e68be'>Update biology/diamond to 0.8.18.</a></td><td>brd</td><td><span title='2016-08-15 05:47:57 +0800'>2016-08-15</span></td><td>2</td><td><span class='deletions'>-4</span>/<span class='insertions'>+4</span></td></tr>
<tr><td class='commitgraph'>* </td><td><a href='/~lantw44/cgit/cgit.cgi/freebsd-ports-gnome/commit/biology?h=gstreamer0.10-removal&amp;id=1cf06a88e8bec5d534a3f6762b8ea995e87262ac'>- Update to 1.9 [1]</a></td><td>wen</td><td><span title='2016-08-08 19:21:04 +0800'>2016-08-08</span></td><td>2</td><td><span class='deletions'>-10</span>/<span class='insertions'>+8</span></td></tr>
<tr><td class='commitgraph'>* </td><td><a href='/~lantw44/cgit/cgit.cgi/freebsd-ports-gnome/commit/biology?h=gstreamer0.10-removal&amp;id=030446cc8a402e0dc02212c7b2523ded314531a0'>Update to version 0.8.17</a></td><td>pawel</td><td><span title='2016-08-06 05:24:06 +0800'>2016-08-06</span></td><td>2</td><td><span class='deletions'>-5</span>/<span class='insertions'>+5</span></td></tr>
<tr><td class='commitgraph'>* </td><td><a href='/~lantw44/cgit/cgit.cgi/freebsd-ports-gnome/commit/biology?h=gstreamer0.10-removal&amp;id=da2b7f0121f4d3919b25d0639143f4284ffaeb97'>biology/seqtools: 4.42.1 -&gt; 4.43.0</a></td><td>pi</td><td><span title='2016-07-31 22:19:09 +0800'>2016-07-31</span></td><td>3</td><td><span class='deletions'>-17</span>/<span class='insertions'>+227</span></td></tr>
<tr><td class='commitgraph'>* </td><td><a href='/~lantw44/cgit/cgit.cgi/freebsd-ports-gnome/commit/biology?h=gstreamer0.10-removal&amp;id=29e935b3d4b448175972f88d710356fb5b50db97'>Update to upstream release 0.8.16</a></td><td>riggs</td><td><span title='2016-07-25 02:06:21 +0800'>2016-07-25</span></td><td>2</td><td><span class='deletions'>-4</span>/<span class='insertions'>+4</span></td></tr>
<tr><td class='commitgraph'>* </td><td><a href='/~lantw44/cgit/cgit.cgi/freebsd-ports-gnome/commit/biology?h=gstreamer0.10-removal&amp;id=db56f13ef4400c01c2a9ef2ba0e545effb4949f9'>Cleanup $() variables in ports Makefiles.</a></td><td>mat</td><td><span title='2016-07-20 23:33:20 +0800'>2016-07-20</span></td><td>1</td><td><span class='deletions'>-1</span>/<span class='insertions'>+1</span></td></tr>
<tr><td class='commitgraph'>* </td><td><a href='/~lantw44/cgit/cgit.cgi/freebsd-ports-gnome/commit/biology?h=gstreamer0.10-removal&amp;id=2afcd3b6ad5f06d3067961169a53647734b3e377'>- update libgd to 2.2.2</a></td><td>dinoex</td><td><span title='2016-07-20 17:33:31 +0800'>2016-07-20</span></td><td>1</td><td><span class='deletions'>-1</span>/<span class='insertions'>+1</span></td></tr>
<tr><td class='commitgraph'>* </td><td><a href='/~lantw44/cgit/cgit.cgi/freebsd-ports-gnome/commit/biology?h=gstreamer0.10-removal&amp;id=363acdd313a37f491e4b2d6b9a807df489cfc5d9'>When there is a do-install target, do not use a post-install target, do</a></td><td>mat</td><td><span title='2016-07-19 19:04:13 +0800'>2016-07-19</span></td><td>3</td><td><span class='deletions'>-4</span>/<span class='insertions'>+5</span></td></tr>
<tr><td class='commitgraph'>* </td><td><a href='/~lantw44/cgit/cgit.cgi/freebsd-ports-gnome/commit/biology?h=gstreamer0.10-removal&amp;id=b7686da4bcd5f48682823f156addb6e717d580c7'>Trim excess tabs, no-op change</a></td><td>pawel</td><td><span title='2016-07-15 00:53:06 +0800'>2016-07-15</span></td><td>1</td><td><span class='deletions'>-13</span>/<span class='insertions'>+13</span></td></tr>
<tr><td class='commitgraph'>* </td><td><a href='/~lantw44/cgit/cgit.cgi/freebsd-ports-gnome/commit/biology?h=gstreamer0.10-removal&amp;id=60c3e2ded886eb8f1afc85af80959c7f42c99aeb'>Update to version 0.8.14</a></td><td>pawel</td><td><span title='2016-07-15 00:49:41 +0800'>2016-07-15</span></td><td>2</td><td><span class='deletions'>-4</span>/<span class='insertions'>+4</span></td></tr>
<tr><td class='commitgraph'>* </td><td><a href='/~lantw44/cgit/cgit.cgi/freebsd-ports-gnome/commit/biology?h=gstreamer0.10-removal&amp;id=56f9de2b605e6770093fa8e087b7c4d9c064f9c3'>- Update to 0.8.11</a></td><td>amdmi3</td><td><span title='2016-07-07 23:46:12 +0800'>2016-07-07</span></td><td>2</td><td><span class='deletions'>-5</span>/<span class='insertions'>+5</span></td></tr>
<tr><td class='commitgraph'>* </td><td><a href='/~lantw44/cgit/cgit.cgi/freebsd-ports-gnome/commit/biology?h=gstreamer0.10-removal&amp;id=44ed4bbba58dfc63e35cdf4076124f4871d2c9f4'>Remove expired ports without open PRs:</a></td><td>rene</td><td><span title='2016-07-05 04:48:23 +0800'>2016-07-05</span></td><td>7</td><td><span class='deletions'>-161</span>/<span class='insertions'>+0</span></td></tr>
<tr><td class='commitgraph'>* </td><td><a href='/~lantw44/cgit/cgit.cgi/freebsd-ports-gnome/commit/biology?h=gstreamer0.10-removal&amp;id=7e8873fe17c38d737c9e6a0e03a4f2904e4b9674'>- LICENSE</a></td><td>amdmi3</td><td><span title='2016-07-02 17:05:22 +0800'>2016-07-02</span></td><td>2</td><td><span class='deletions'>-10</span>/<span class='insertions'>+22</span></td></tr>
<tr><td class='commitgraph'>* </td><td><a href='/~lantw44/cgit/cgit.cgi/freebsd-ports-gnome/commit/biology?h=gstreamer0.10-removal&amp;id=845ad7b1b808f5c3b664a3bc2f5539ea92533623'>biology/diamond: update 0.8.6 -&gt; 0.8.9</a></td><td>junovitch</td><td><span title='2016-06-30 09:37:22 +0800'>2016-06-30</span></td><td>2</td><td><span class='deletions'>-4</span>/<span class='insertions'>+4</span></td></tr>
<tr><td class='commitgraph'>* </td><td><a href='/~lantw44/cgit/cgit.cgi/freebsd-ports-gnome/commit/biology?h=gstreamer0.10-removal&amp;id=a9205814ff7bdda24a3b41577d790169d703672c'>- Add missing dependency, fixing build</a></td><td>amdmi3</td><td><span title='2016-06-24 17:04:45 +0800'>2016-06-24</span></td><td>1</td><td><span class='deletions'>-1</span>/<span class='insertions'>+5</span></td></tr>
<tr><td class='commitgraph'>* </td><td><a href='/~lantw44/cgit/cgit.cgi/freebsd-ports-gnome/commit/biology?h=gstreamer0.10-removal&amp;id=95c934f9aeb4a0862dac1289586db8f30251070c'>- Switch to options helpers</a></td><td>amdmi3</td><td><span title='2016-06-21 17:05:06 +0800'>2016-06-21</span></td><td>2</td><td><span class='deletions'>-7</span>/<span class='insertions'>+11</span></td></tr>
<tr><td class='commitgraph'>* </td><td><a href='/~lantw44/cgit/cgit.cgi/freebsd-ports-gnome/commit/biology?h=gstreamer0.10-removal&amp;id=8f312e1a48709b5d9cfbeb89ff1f48616ef4a26f'>biology/diamond: update to 0.8.6</a></td><td>rm</td><td><span title='2016-06-18 03:53:46 +0800'>2016-06-18</span></td><td>2</td><td><span class='deletions'>-4</span>/<span class='insertions'>+4</span></td></tr>
<tr><td class='commitgraph'>* </td><td><a href='/~lantw44/cgit/cgit.cgi/freebsd-ports-gnome/commit/biology?h=gstreamer0.10-removal&amp;id=79e42959c69131324d461f90b3f45ca3acdc02f2'>- Fix run-time dependency issues</a></td><td>olivierd</td><td><span title='2016-06-11 17:25:04 +0800'>2016-06-11</span></td><td>1</td><td><span class='deletions'>-2</span>/<span class='insertions'>+13</span></td></tr>
<tr><td class='commitgraph'>* </td><td><a href='/~lantw44/cgit/cgit.cgi/freebsd-ports-gnome/commit/biology?h=gstreamer0.10-removal&amp;id=e32fd0cf9c691d13a59227939ae75e81920d707e'>biology/seaview: Update version 4.5.4.8=&gt;4.6</a></td><td>bofh</td><td><span title='2016-06-10 19:06:42 +0800'>2016-06-10</span></td><td>2</td><td><span class='deletions'>-7</span>/<span class='insertions'>+4</span></td></tr>
<tr><td class='commitgraph'>* </td><td><a href='/~lantw44/cgit/cgit.cgi/freebsd-ports-gnome/commit/biology?h=gstreamer0.10-removal&amp;id=c86bbdc934690cfe9f7b3ccbba91590d52f4de47'>Update to 0.8.5</a></td><td>matthew</td><td><span title='2016-06-09 09:39:58 +0800'>2016-06-09</span></td><td>3</td><td><span class='deletions'>-34</span>/<span class='insertions'>+18</span></td></tr>
<tr><td class='commitgraph'>* </td><td><a href='/~lantw44/cgit/cgit.cgi/freebsd-ports-gnome/commit/biology?h=gstreamer0.10-removal&amp;id=e40937759787dc7dd2f23b29fe0a6194e1bde92c'>- Update to 1.35</a></td><td>wen</td><td><span title='2016-06-08 15:39:05 +0800'>2016-06-08</span></td><td>2</td><td><span class='deletions'>-3</span>/<span class='insertions'>+4</span></td></tr>
<tr><td class='commitgraph'>* </td><td><a href='/~lantw44/cgit/cgit.cgi/freebsd-ports-gnome/commit/biology?h=gstreamer0.10-removal&amp;id=5170c5aedf2eb01a419032e804609ea5ed5f2399'>Remove unneeded usage of:</a></td><td>mat</td><td><span title='2016-06-06 23:25:42 +0800'>2016-06-06</span></td><td>1</td><td><span class='deletions'>-2</span>/<span class='insertions'>+1</span></td></tr>
<tr><td class='commitgraph'>* </td><td><a href='/~lantw44/cgit/cgit.cgi/freebsd-ports-gnome/commit/biology?h=gstreamer0.10-removal&amp;id=76923284d121afff121a628c16bc7d49b1a9702f'>Deprecate ports broken for more than 6 months</a></td><td>antoine</td><td><span title='2016-06-04 00:44:58 +0800'>2016-06-04</span></td><td>2</td><td><span class='deletions'>-0</span>/<span class='insertions'>+4</span></td></tr>
<tr><td class='commitgraph'>* </td><td><a href='/~lantw44/cgit/cgit.cgi/freebsd-ports-gnome/commit/biology?h=gstreamer0.10-removal&amp;id=60f1072468e2ec39b69021a8f2d2bd6e02153917'>- Do install cmake and pkgconfig modules</a></td><td>amdmi3</td><td><span title='2016-05-28 00:10:36 +0800'>2016-05-28</span></td><td>2</td><td><span class='deletions'>-3</span>/<span class='insertions'>+8</span></td></tr>
<tr><td class='commitgraph'>* </td><td><a href='/~lantw44/cgit/cgit.cgi/freebsd-ports-gnome/commit/biology?h=gstreamer0.10-removal&amp;id=8a29aea4b68b3be0c1e1994ef33bf98b8d96f7c5'>biology/{htslib|samtools|bcftools}: 1.3 -&gt; 1.3.1</a></td><td>pi</td><td><span title='2016-05-27 04:28:55 +0800'>2016-05-27</span></td><td>8</td><td><span class='deletions'>-20</span>/<span class='insertions'>+23</span></td></tr>
<tr><td class='commitgraph'>* </td><td><a href='/~lantw44/cgit/cgit.cgi/freebsd-ports-gnome/commit/biology?h=gstreamer0.10-removal&amp;id=9ec61f48def80e1a6cac88e7acc7894cc689135b'>Remove useless WRKSRC definitions.</a></td><td>mat</td><td><span title='2016-05-25 23:43:34 +0800'>2016-05-25</span></td><td>1</td><td><span class='deletions'>-2</span>/<span class='insertions'>+0</span></td></tr>
<tr><td class='commitgraph'>* </td><td><a href='/~lantw44/cgit/cgit.cgi/freebsd-ports-gnome/commit/biology?h=gstreamer0.10-removal&amp;id=93637cc764dd0eadb39d4faf2311bc61d7b3e265'>- Fix trailing whitespace in pkg-messages</a></td><td>amdmi3</td><td><span title='2016-05-19 19:09:14 +0800'>2016-05-19</span></td><td>6</td><td><span class='deletions'>-12</span>/<span class='insertions'>+12</span></td></tr>
<tr><td class='commitgraph'>* </td><td><a href='/~lantw44/cgit/cgit.cgi/freebsd-ports-gnome/commit/biology?h=gstreamer0.10-removal&amp;id=e127cf2f03a87283f703b70f81a3e1891e56e7f5'>- Fix trailing whitespace in pkg-descrs, categories [a-f]*</a></td><td>amdmi3</td><td><span title='2016-05-19 18:21:23 +0800'>2016-05-19</span></td><td>21</td><td><span class='deletions'>-36</span>/<span class='insertions'>+36</span></td></tr>
<tr><td class='commitgraph'>* </td><td><a href='/~lantw44/cgit/cgit.cgi/freebsd-ports-gnome/commit/biology?h=gstreamer0.10-removal&amp;id=fb35750953e2fc68bb5d80dfc22b1628772b6716'>Fix DEPENDS</a></td><td>antoine</td><td><span title='2016-05-19 00:22:07 +0800'>2016-05-19</span></td><td>1</td><td><span class='deletions'>-2</span>/<span class='insertions'>+2</span></td></tr>
<tr><td class='commitgraph'>* </td><td><a href='/~lantw44/cgit/cgit.cgi/freebsd-ports-gnome/commit/biology?h=gstreamer0.10-removal&amp;id=d4bbb62ee1ad620773a6d3a13bab618e82b26978'>- Convert to USES=mysql</a></td><td>amdmi3</td><td><span title='2016-05-17 02:20:41 +0800'>2016-05-17</span></td><td>1</td><td><span class='deletions'>-8</span>/<span class='insertions'>+4</span></td></tr>
<tr><td class='commitgraph'>* </td><td><a href='/~lantw44/cgit/cgit.cgi/freebsd-ports-gnome/commit/biology?h=gstreamer0.10-removal&amp;id=25b7d831c69dfba64a18c57d39bb5632fd209859'>- Update to 4.9a</a></td><td>amdmi3</td><td><span title='2016-05-17 00:10:36 +0800'>2016-05-17</span></td><td>2</td><td><span class='deletions'>-4</span>/<span class='insertions'>+7</span></td></tr>
<tr><td class='commitgraph'>* </td><td><a href='/~lantw44/cgit/cgit.cgi/freebsd-ports-gnome/commit/biology?h=gstreamer0.10-removal&amp;id=27edd65a576fcfecf10f31a40919776741d53efc'>biology/bowtie2: 2.2.7 -&gt; 2.2.8</a></td><td>pi</td><td><span title='2016-05-14 04:12:44 +0800'>2016-05-14</span></td><td>2</td><td><span class='deletions'>-3</span>/<span class='insertions'>+3</span></td></tr>
<tr><td class='commitgraph'>* </td><td><a href='/~lantw44/cgit/cgit.cgi/freebsd-ports-gnome/commit/biology?h=gstreamer0.10-removal&amp;id=34168f4fd18f15cfa01d53ec75740aedb37aab7e'>Prevent collision with getline(3)</a></td><td>bapt</td><td><span title='2016-05-14 02:39:06 +0800'>2016-05-14</span></td><td>1</td><td><span class='deletions'>-0</span>/<span class='insertions'>+300</span></td></tr>
<tr><td class='commitgraph'>* </td><td><a href='/~lantw44/cgit/cgit.cgi/freebsd-ports-gnome/commit/biology?h=gstreamer0.10-removal&amp;id=f886d93f2356d4b604a45b78b27794feeba32e4a'>Prevent collision with getline(3)</a></td><td>bapt</td><td><span title='2016-05-14 02:38:34 +0800'>2016-05-14</span></td><td>1</td><td><span class='deletions'>-0</span>/<span class='insertions'>+291</span></td></tr>
<tr><td class='commitgraph'>* </td><td><a href='/~lantw44/cgit/cgit.cgi/freebsd-ports-gnome/commit/biology?h=gstreamer0.10-removal&amp;id=7b6a28b05b90764d15c7a997d7984eac3433fba7'>Prevent collision with getline(3)</a></td><td>bapt</td><td><span title='2016-05-12 05:48:50 +0800'>2016-05-12</span></td><td>4</td><td><span class='deletions'>-6</span>/<span class='insertions'>+27</span></td></tr>
<tr><td class='commitgraph'>* </td><td><a href='/~lantw44/cgit/cgit.cgi/freebsd-ports-gnome/commit/biology?h=gstreamer0.10-removal&amp;id=71303edf365316b1610ae2410c8fc797ae56d7b0'>biology/seqan: update 1.3.1 -&gt; 2.1.1</a></td><td>junovitch</td><td><span title='2016-05-10 09:05:23 +0800'>2016-05-10</span></td><td>12</td><td><span class='deletions'>-1915</span>/<span class='insertions'>+3706</span></td></tr>
<tr><td class='commitgraph'>* </td><td><a href='/~lantw44/cgit/cgit.cgi/freebsd-ports-gnome/commit/biology?h=gstreamer0.10-removal&amp;id=288c7727d2e4f9517fe3572cdec2562f6c3c6ea1'>New port: biology/seqan-apps</a></td><td>junovitch</td><td><span title='2016-05-10 08:52:04 +0800'>2016-05-10</span></td><td>5</td><td><span class='deletions'>-0</span>/<span class='insertions'>+220</span></td></tr>
<tr><td class='commitgraph'>* </td><td><a href='/~lantw44/cgit/cgit.cgi/freebsd-ports-gnome/commit/biology?h=gstreamer0.10-removal&amp;id=879fdc054cb37b4d16ce7cd792d6c9d95d7940c5'>Add final slash in WWW entry</a></td><td>olivierd</td><td><span title='2016-05-10 00:42:17 +0800'>2016-05-10</span></td><td>1</td><td><span class='deletions'>-1</span>/<span class='insertions'>+1</span></td></tr>
<tr><td class='commitgraph'>* </td><td><a href='/~lantw44/cgit/cgit.cgi/freebsd-ports-gnome/commit/biology?h=gstreamer0.10-removal&amp;id=df0f0443ef912d00eaaac8959980160b48bef738'>The BIOM file format (canonically pronounced biome) is designed to be a</a></td><td>olivierd</td><td><span title='2016-05-10 00:37:44 +0800'>2016-05-10</span></td><td>4</td><td><span class='deletions'>-0</span>/<span class='insertions'>+48</span></td></tr>
<tr><td class='commitgraph'>* </td><td><a href='/~lantw44/cgit/cgit.cgi/freebsd-ports-gnome/commit/biology?h=gstreamer0.10-removal&amp;id=09c33cf25d3631e9f102469406d52723f80bef3f'>During the exp-run in bug 208158, it was found that biology/ugene gives</a></td><td>dim</td><td><span title='2016-05-08 03:38:53 +0800'>2016-05-08</span></td><td>4</td><td><span class='deletions'>-0</span>/<span class='insertions'>+36</span></td></tr>
<tr><td class='commitgraph'>* </td><td><a href='/~lantw44/cgit/cgit.cgi/freebsd-ports-gnome/commit/biology?h=gstreamer0.10-removal&amp;id=226c9463face01edf489bbd1d624dd6db848b989'>DNA query sequences against a protein reference database (BLASTP and BLASTX</a></td><td>wen</td><td><span title='2016-05-06 16:45:02 +0800'>2016-05-06</span></td><td>5</td><td><span class='deletions'>-0</span>/<span class='insertions'>+71</span></td></tr>
<tr><td class='commitgraph'>* </td><td><a href='/~lantw44/cgit/cgit.cgi/freebsd-ports-gnome/commit/biology?h=gstreamer0.10-removal&amp;id=e1b12d8b3c0503f7d8055aac689518e60e60107e'>- Update to 1.14.8</a></td><td>danilo</td><td><span title='2016-05-01 09:03:48 +0800'>2016-05-01</span></td><td>3</td><td><span class='deletions'>-4</span>/<span class='insertions'>+4</span></td></tr>
<tr><td class='commitgraph'>* </td><td><a href='/~lantw44/cgit/cgit.cgi/freebsd-ports-gnome/commit/biology?h=gstreamer0.10-removal&amp;id=39e2d3ca92ef4a9072392dde77892ebe43cc1fc6'>biology/seqtools: 4.41.1 -&gt; 4.42.1</a></td><td>pi</td><td><span title='2016-04-23 00:27:25 +0800'>2016-04-23</span></td><td>2</td><td><span class='deletions'>-5</span>/<span class='insertions'>+5</span></td></tr>
<tr><td class='commitgraph'>* </td><td><a href='/~lantw44/cgit/cgit.cgi/freebsd-ports-gnome/commit/biology?h=gstreamer0.10-removal&amp;id=846d8199972dd0559fe10d7173837b7a0309069b'>many ports: mark broken on powerpc64</a></td><td>swills</td><td><span title='2016-04-22 00:43:14 +0800'>2016-04-22</span></td><td>1</td><td><span class='deletions'>-0</span>/<span class='insertions'>+2</span></td></tr>
<tr><td class='commitgraph'>* </td><td><a href='/~lantw44/cgit/cgit.cgi/freebsd-ports-gnome/commit/biology?h=gstreamer0.10-removal&amp;id=c3b7d73a18f441715589172d8423887a6ef6dbfe'>- Switch to options helpers</a></td><td>amdmi3</td><td><span title='2016-04-17 18:15:59 +0800'>2016-04-17</span></td><td>3</td><td><span class='deletions'>-16</span>/<span class='insertions'>+17</span></td></tr>
<tr><td class='commitgraph'>* </td><td><a href='/~lantw44/cgit/cgit.cgi/freebsd-ports-gnome/commit/biology?h=gstreamer0.10-removal&amp;id=aba4cf66c154abbba220df8183f9730f2c0a1c43'>- Update to 1.66</a></td><td>wen</td><td><span title='2016-04-17 11:55:01 +0800'>2016-04-17</span></td><td>2</td><td><span class='deletions'>-4</span>/<span class='insertions'>+3</span></td></tr>
<tr><td class='commitgraph'>* </td><td><a href='/~lantw44/cgit/cgit.cgi/freebsd-ports-gnome/commit/biology?h=gstreamer0.10-removal&amp;id=c4aaf4ea167c86a5fd05132e9ff89fea56d1ade0'>- Switch to options helpers</a></td><td>amdmi3</td><td><span title='2016-04-16 14:38:23 +0800'>2016-04-16</span></td><td>1</td><td><span class='deletions'>-3</span>/<span class='insertions'>+8</span></td></tr>
<tr><td class='commitgraph'>* </td><td><a href='/~lantw44/cgit/cgit.cgi/freebsd-ports-gnome/commit/biology?h=gstreamer0.10-removal&amp;id=1f9f1eaa58138e166304be4cf0226202f6f6faa8'>Upgrade from 5.12.0 to 5.13.0. Release-announcement available here:</a></td><td>mi</td><td><span title='2016-04-16 09:54:15 +0800'>2016-04-16</span></td><td>3</td><td><span class='deletions'>-4</span>/<span class='insertions'>+5</span></td></tr>
<tr><td class='commitgraph'>* </td><td><a href='/~lantw44/cgit/cgit.cgi/freebsd-ports-gnome/commit/biology?h=gstreamer0.10-removal&amp;id=aa836cc9aa03f4a8cab51a43b585c007708fb0bf'>Update to version 1.22.0, which now unfortunately requires Qt 5.x.  Also</a></td><td>danfe</td><td><span title='2016-04-14 12:07:44 +0800'>2016-04-14</span></td><td>9</td><td><span class='deletions'>-36</span>/<span class='insertions'>+204</span></td></tr>
<tr><td class='commitgraph'>* </td><td><a href='/~lantw44/cgit/cgit.cgi/freebsd-ports-gnome/commit/biology?h=gstreamer0.10-removal&amp;id=93f99783a253e75f5d25534639b3375db5e11469'>- Add LICENSE</a></td><td>amdmi3</td><td><span title='2016-04-10 19:24:32 +0800'>2016-04-10</span></td><td>1</td><td><span class='deletions'>-1</span>/<span class='insertions'>+8</span></td></tr>
<tr><td class='commitgraph'>* </td><td><a href='/~lantw44/cgit/cgit.cgi/freebsd-ports-gnome/commit/biology?h=gstreamer0.10-removal&amp;id=96cd8e4bc2d30db4bc3bbbf3fcdcc98121c879e0'>Remove ${PORTSDIR}/ from dependencies, Mk and categories a, b, and c.</a></td><td>mat</td><td><span title='2016-04-01 21:29:15 +0800'>2016-04-01</span></td><td>38</td><td><span class='deletions'>-148</span>/<span class='insertions'>+148</span></td></tr>
<tr><td class='commitgraph'>* </td><td><a href='/~lantw44/cgit/cgit.cgi/freebsd-ports-gnome/commit/biology?h=gstreamer0.10-removal&amp;id=582b9468e84312422518950252933d2c6499af57'>- Update to 1.5.0</a></td><td>amdmi3</td><td><span title='2016-04-01 01:36:54 +0800'>2016-04-01</span></td><td>3</td><td><span class='deletions'>-23</span>/<span class='insertions'>+11</span></td></tr>
<tr><td class='commitgraph'>* </td><td><a href='/~lantw44/cgit/cgit.cgi/freebsd-ports-gnome/commit/biology?h=gstreamer0.10-removal&amp;id=14c85708edcf8576731b7d05159f09b23f3a2c0b'>- Use more appropriate BROKEN instead of IGNORE</a></td><td>amdmi3</td><td><span title='2016-03-30 04:55:48 +0800'>2016-03-30</span></td><td>1</td><td><span class='deletions'>-4</span>/<span class='insertions'>+2</span></td></tr>
<tr><td class='commitgraph'>* </td><td><a href='/~lantw44/cgit/cgit.cgi/freebsd-ports-gnome/commit/biology?h=gstreamer0.10-removal&amp;id=8379d0cf5040e89d3a158f23ec9edb9f081d81da'>- Update to 5.12.0</a></td><td>wen</td><td><span title='2016-03-27 15:09:34 +0800'>2016-03-27</span></td><td>3