ARIADNE is a package of two programs, ariadne and prospero, that compare
protein sequences and profiles using the Smith-Waterman algorithm, and
assesses statistical significance using a new accurate formula,
described in Mott, 2000, "Accurate Formula for P-values of gapped local
sequence and profile alignments" J. Mol Biol. 300:649-659.

The sequence/profile comparison algorithms used in ARIADNE are standard,
and are probably not the fastest implementations available. The novel
part is the method for determining statistical significance, which will
give thresholds of significance that are accurate to within 5% 95% of
the time.

The package is written in ANSI C. You are free to incorporate the method
used for assessing statistical significance into third-party code,
provided you cite the above reference. The routines for assessing
significance are all in gaplib.c 

WWW: http://www.well.ox.ac.uk/ariadne/
ref='http://tfcis.org/~lantw44/cgit/cgit.cgi/freebsd-ports-gnome/commit/?id=0ea2ef16cb1b39b82ff6b534b8389aa2953e4ea8'/>
<id>0ea2ef16cb1b39b82ff6b534b8389aa2953e4ea8</id>
<content type='text'>
If NO_ARCH is set then check that no FreeBSD elf(5) files are in $STAGEDIR.
If an elf(5) file is bundles as part of the package, but is not meant to be
run directly (i.e. the elf(5) file is a payload, and not compiled) then
those files can be added to NO_ARCH_IGNORE to avoid the check from failing,

Changes to ports:
 - Ports that have NO_ARCH set, but actually compile files have had NO_ARCH
   removed.
 - Ports that have elf(5) payloads have had those files added to
   NO_ARCH_IGNORE.
 - R-cran ports that do not set USES=cran:compiles have NO_ARCH set,

PR:		218976
Reviewed by:	antoine, mat
Approved by:	portmgr
</content>
<content type='xhtml'>
<div xmlns='http://www.w3.org/1999/xhtml'>
<pre>
If NO_ARCH is set then check that no FreeBSD elf(5) files are in $STAGEDIR.
If an elf(5) file is bundles as part of the package, but is not meant to be
run directly (i.e. the elf(5) file is a payload, and not compiled) then
those files can be added to NO_ARCH_IGNORE to avoid the check from failing,

Changes to ports:
 - Ports that have NO_ARCH set, but actually compile files have had NO_ARCH
   removed.
 - Ports that have elf(5) payloads have had those files added to
   NO_ARCH_IGNORE.
 - R-cran ports that do not set USES=cran:compiles have NO_ARCH set,

PR:		218976
Reviewed by:	antoine, mat
Approved by:	portmgr
</pre>
</div>
</content>
</entry>
<entry>
<title>Remove ${PORTSDIR}/ from dependencies, categories m, n, o, and p.</title>
<updated>2016-04-01T14:16:16+00:00</updated>
<author>
<name>mat</name>
<email>mat@FreeBSD.org</email>
</author>
<published>2016-04-01T14:16:16+00:00</published>
<link rel='alternate' type='text/html' href='http://tfcis.org/~lantw44/cgit/cgit.cgi/freebsd-ports-gnome/commit/?id=c60c1d09235abbfd733e901b1872b86adc82027c'/>
<id>c60c1d09235abbfd733e901b1872b86adc82027c</id>
<content type='text'>
With hat:	portmgr
Sponsored by:	Absolight
</content>
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<div xmlns='http://www.w3.org/1999/xhtml'>
<pre>
With hat:	portmgr
Sponsored by:	Absolight
</pre>
</div>
</content>
</entry>
<entry>
<title>- Update to 1.0.1</title>
<updated>2015-12-06T06:54:57+00:00</updated>
<author>
<name>tota</name>
<email>tota@FreeBSD.org</email>
</author>
<published>2015-12-06T06:54:57+00:00</published>
<link rel='alternate' type='text/html' href='http://tfcis.org/~lantw44/cgit/cgit.cgi/freebsd-ports-gnome/commit/?id=29228e9cb29c754c84de7317863a10a3010bbe41'/>
<id>29228e9cb29c754c84de7317863a10a3010bbe41</id>
<content type='text'>
- Update COMMENT and pkg-descr
</content>
<content type='xhtml'>
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<pre>
- Update COMMENT and pkg-descr
</pre>
</div>
</content>
</entry>