GRAPPA: Genome Rearrangements Analysis under Parsimony and other Phylogenetic Algorithms This suite of programs implements the approach to phylogeny reconstruction from gene orders described in the paper Moret, B.M.E., Wyman, S., Bader, D.A., Warnow, T., and Yan, M., ``A detailed study of breakpoint analysis,'' Proc. 6th Pacific Symp. Biocomputing PSB 2001, Hawaii (2001). In its current state, "grappa" allows one to explore either the space of all possible trees on n labelled leaves or the space of all such trees that obey (are refinements of) a particular constraint tree. "invdist" takes the first two genomes in the input file and returns their inversion distance. "distmat" prints the inversion and breakpoint distance matrices. WWW: http://www.cs.unm.edu/~moret/GRAPPA/ />

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	Commit message (Expand)	Author	Age	Files	Lines
*	- Update to 0.06	sunpoet	2015-05-24	3	-8/+11
*	Change the way Perl modules are installed, update the default Perl to 5.18.	mat	2014-11-26	2	-8/+1
*	Support STAGEDIR.	vanilla	2013-11-07	2	-5/+8
*	Add NO_STAGE all over the place in preparation for the staging support (cat: ...	bapt	2013-09-21	1	-0/+1
*	- Use single space after WWW:	sunpoet	2013-08-29	1	-1/+1
*	- Convert to new perl framework	mat	2013-08-03	1	-6/+3