# New ports collection Makefile for: hmmer
# Date created:		June 29 1998
# Whom:			barnhart@genetics.wustl.edu
#
# $FreeBSD$
#

PORTNAME=	hmmer
PORTVERSION=	2.3.2
CATEGORIES=	biology
MASTER_SITES=	ftp://selab.janelia.org/pub/software/hmmer/CURRENT/

MAINTAINER=	fernan@iib.unsam.edu.ar
COMMENT=	Profile hidden Markov models for biological sequence analysis

GNU_CONFIGURE=	yes
USE_PERL5=	yes
CONFIGURE_ARGS+=--enable-threads --enable-lfs

DOCFILES=	00README COPYRIGHT INSTALL LICENSE NOTES Userguide.pdf
EXAMPLES=	7LES_DROME amino.null globins50.msf nucleic.pri rrm.sto \
		Artemia.fa amino.pri globins630.fa pkinase.sto RU1A_HUMAN \
		fn3.sto nucleic.null rrm.hmm
MAN1=		hmmalign.1 hmmbuild.1 hmmcalibrate.1 hmmconvert.1 hmmemit.1 \
		hmmer.1 hmmfetch.1 hmmindex.1 hmmpfam.1 hmmsearch.1

.if defined(WITH_PVM)
CONFIGURE_ENV+=		PVM_ROOT="${LOCALBASE}/lib/pvm" PVM_ARCH="FREEBSD"
CONFIGURE_ARGS+=	--with-pvm
BUILD_DEPENDS+=		pvm:${PORTSDIR}/net/pvm
.endif

post-install:
.if !defined(NOPORTDOCS)
	@ ${MKDIR} ${DOCSDIR}
.for docfile in ${DOCFILES}
	@ ${INSTALL_DATA} ${WRKSRC}/${docfile} ${DOCSDIR}
.endfor
.endif
	@ ${MKDIR} ${EXAMPLESDIR}
.for example in ${EXAMPLES}
	@ ${INSTALL_DATA} ${WRKSRC}/tutorial/${example} ${EXAMPLESDIR}
.endfor
.if !defined(BATCH)
	@ ${CAT} ${PKGMESSAGE}
.endif

.include <bsd.port.mk>
a5899c67b16185aa84dd211855911ce'/><select name='h' onchange='this.form.submit();'>
<option value='cinnamon'>cinnamon</option>
<option value='cinnamon-2.8'>cinnamon-2.8</option>
<option value='dependabot/npm_and_yarn/devel/electron4/files/bl-1.2.3'>dependabot/npm_and_yarn/devel/electron4/files/bl-1.2.3</option>
<option value='dependabot/npm_and_yarn/devel/electron4/files/elliptic-6.5.3'>dependabot/npm_and_yarn/devel/electron4/files/elliptic-6.5.3</option>
<option value='dependabot/npm_and_yarn/devel/electron4/files/elliptic-6.5.4'>dependabot/npm_and_yarn/devel/electron4/files/elliptic-6.5.4</option>
<option value='dependabot/npm_and_yarn/devel/electron4/files/ini-1.3.7'>dependabot/npm_and_yarn/devel/electron4/files/ini-1.3.7</option>
<option value='dependabot/npm_and_yarn/devel/electron4/files/lodash-4.17.19'>dependabot/npm_and_yarn/devel/electron4/files/lodash-4.17.19</option>
<option value='dependabot/npm_and_yarn/devel/electron4/files/lodash.merge-4.6.2'>dependabot/npm_and_yarn/devel/electron4/files/lodash.merge-4.6.2</option>
<option value='dependabot/npm_and_yarn/devel/electron4/files/minimist-1.2.2'>dependabot/npm_and_yarn/devel/electron4/files/minimist-1.2.2</option>
<option value='dependabot/npm_and_yarn/devel/electron4/files/minimist-1.2.3'>dependabot/npm_and_yarn/devel/electron4/files/minimist-1.2.3</option>
<option value='dependabot/npm_and_yarn/devel/electron4/files/node-fetch-2.6.1'>dependabot/npm_and_yarn/devel/electron4/files/node-fetch-2.6.1</option>
<option value='dependabot/npm_and_yarn/devel/electron4/files/serve-10.1.2'>dependabot/npm_and_yarn/devel/electron4/files/serve-10.1.2</option>
<option value='dependabot/npm_and_yarn/devel/electron4/files/y18n-3.2.2'>dependabot/npm_and_yarn/devel/electron4/files/y18n-3.2.2</option>
<option value='dependabot/npm_and_yarn/devel/electron6/files/elliptic-6.5.3'>dependabot/npm_and_yarn/devel/electron6/files/elliptic-6.5.3</option>
<option value='dependabot/npm_and_yarn/devel/electron6/files/elliptic-6.5.4'>dependabot/npm_and_yarn/devel/electron6/files/elliptic-6.5.4</option>
<option value='dependabot/npm_and_yarn/devel/electron6/files/ini-1.3.8'>dependabot/npm_and_yarn/devel/electron6/files/ini-1.3.8</option>
<option value='dependabot/npm_and_yarn/devel/electron6/files/lodash-4.17.19'>dependabot/npm_and_yarn/devel/electron6/files/lodash-4.17.19</option>
<option value='dependabot/npm_and_yarn/devel/electron6/files/lodash.merge-4.6.2'>dependabot/npm_and_yarn/devel/electron6/files/lodash.merge-4.6.2</option>
<option value='dependabot/npm_and_yarn/devel/electron6/files/node-fetch-2.6.1'>dependabot/npm_and_yarn/devel/electron6/files/node-fetch-2.6.1</option>
<option value='dependabot/npm_and_yarn/devel/electron6/files/serve-10.1.2'>dependabot/npm_and_yarn/devel/electron6/files/serve-10.1.2</option>
<option value='gnome-3.22'>gnome-3.22</option>
<option value='gnome-3.24'>gnome-3.24</option>
<option value='gnome-3.26'>gnome-3.26</option>
<option value='gnome-3.28'>gnome-3.28</option>
<option value='gnome-3.32'>gnome-3.32</option>
<option value='gnome-3.36'>gnome-3.36</option>
<option value='gstreamer'>gstreamer</option>
<option value='gstreamer-1.16'>gstreamer-1.16</option>
<option value='gstreamer0.10-removal'>gstreamer0.10-removal</option>
<option value='main'>main</option>
<option value='master'>master</option>
<option value='mate-1.16'>mate-1.16</option>
<option value='mate-1.18'>mate-1.18</option>
<option value='mate-1.20' selected='selected'>mate-1.20</option>
<option value='mate-1.22'>mate-1.22</option>
</select> <input type='submit' value='switch'/></form></td></tr>
<tr><td class='sub'>FreeBSD GNOME current development ports (https://github.com/freebsd/freebsd-ports-gnome)</td><td class='sub right'></td></tr></table>
<table class='tabs'><tr><td>
<a href='/~lantw44/cgit/cgit.cgi/freebsd-ports-gnome/about/?h=mate-1.20'>about</a><a href='/~lantw44/cgit/cgit.cgi/freebsd-ports-gnome/?h=mate-1.20'>summary</a><a href='/~lantw44/cgit/cgit.cgi/freebsd-ports-gnome/refs/?h=mate-1.20&amp;id=fc49704bda5899c67b16185aa84dd211855911ce'>refs</a><a class='active' href='/~lantw44/cgit/cgit.cgi/freebsd-ports-gnome/log/mail/mew-emacs20?h=mate-1.20'>log</a><a href='/~lantw44/cgit/cgit.cgi/freebsd-ports-gnome/tree/mail/mew-emacs20?h=mate-1.20&amp;id=fc49704bda5899c67b16185aa84dd211855911ce'>tree</a><a href='/~lantw44/cgit/cgit.cgi/freebsd-ports-gnome/commit/mail/mew-emacs20?h=mate-1.20&amp;id=fc49704bda5899c67b16185aa84dd211855911ce'>commit</a><a href='/~lantw44/cgit/cgit.cgi/freebsd-ports-gnome/diff/mail/mew-emacs20?h=mate-1.20&amp;id=fc49704bda5899c67b16185aa84dd211855911ce'>diff</a><a href='/~lantw44/cgit/cgit.cgi/freebsd-ports-gnome/stats/mail/mew-emacs20?h=mate-1.20'>stats</a></td><td class='form'><form class='right' method='get' action='/~lantw44/cgit/cgit.cgi/freebsd-ports-gnome/log/mail/mew-emacs20'>
<input type='hidden' name='h' value='mate-1.20'/><input type='hidden' name='id' value='fc49704bda5899c67b16185aa84dd211855911ce'/><select name='qt'>
<option value='grep'>log msg</option>
<option value='author'>author</option>
<option value='committer'>committer</option>
<option value='range'>range</option>
</select>
<input class='txt' type='search' size='10' name='q' value=''/>
<input type='submit' value='search'/>
</form>
</td></tr></table>
<div class='path'>path: <a href='/~lantw44/cgit/cgit.cgi/freebsd-ports-gnome/log/?h=mate-1.20&amp;id=fc49704bda5899c67b16185aa84dd211855911ce'>root</a>/<a href='/~lantw44/cgit/cgit.cgi/freebsd-ports-gnome/log/mail?h=mate-1.20&amp;id=fc49704bda5899c67b16185aa84dd211855911ce'>mail</a>/<a href='/~lantw44/cgit/cgit.cgi/freebsd-ports-gnome/log/mail/mew-emacs20?h=mate-1.20&amp;id=fc49704bda5899c67b16185aa84dd211855911ce'>mew-emacs20</a></div><div class='content'><table class='list nowrap'><tr class='nohover'><th></th><th class='left'>Commit message (<a href='/~lantw44/cgit/cgit.cgi/freebsd-ports-gnome/log/mail/mew-emacs20?h=mate-1.20&amp;id=fc49704bda5899c67b16185aa84dd211855911ce&amp;showmsg=1'>Expand</a>)</th><th class='left'>Author</th><th class='left'>Age</th><th class='left'>Files</th><th class='left'>Lines</th></tr>