bin/blast_formatter
bin/blastdb_aliastool
bin/blastdbcheck
bin/blastdbcmd
bin/blastdbcp
bin/blastn
bin/blastp
bin/blastx
bin/convert2blastmask
bin/datatool
bin/deltablast
bin/dustmasker
bin/gene_info_reader
bin/legacy_blast.pl
bin/makeblastdb
bin/makembindex
bin/makeprofiledb
bin/project_tree_builder
bin/psiblast
bin/rpsblast
bin/rpstblastn
bin/seedtop
bin/segmasker
bin/seqdb_demo
bin/seqdb_perf
bin/tblastn
bin/tblastx
bin/update_blastdb.pl
bin/windowmasker
bin/windowmasker_2.2.22_adapter.py
include/ncbi-tools++/algo/blast/api/bl2seq.hpp
include/ncbi-tools++/algo/blast/api/blast_advprot_options.hpp
include/ncbi-tools++/algo/blast/api/blast_aux.hpp
include/ncbi-tools++/algo/blast/api/blast_dbindex.hpp
include/ncbi-tools++/algo/blast/api/blast_exception.hpp
include/ncbi-tools++/algo/blast/api/blast_mtlock.hpp
include/ncbi-tools++/algo/blast/api/blast_nucl_options.hpp
include/ncbi-tools++/algo/blast/api/blast_options.hpp
include/ncbi-tools++/algo/blast/api/blast_options_builder.hpp
include/ncbi-tools++/algo/blast/api/blast_options_handle.hpp
include/ncbi-tools++/algo/blast/api/blast_prot_options.hpp
include/ncbi-tools++/algo/blast/api/blast_results.hpp
include/ncbi-tools++/algo/blast/api/blast_rps_options.hpp
include/ncbi-tools++/algo/blast/api/blast_seqinfosrc.hpp
include/ncbi-tools++/algo/blast/api/blast_seqinfosrc_aux.hpp
include/ncbi-tools++/algo/blast/api/blast_types.hpp
include/ncbi-tools++/algo/blast/api/blastx_options.hpp
include/ncbi-tools++/algo/blast/api/cdd_pssm_input.hpp
include/ncbi-tools++/algo/blast/api/deltablast.hpp
include/ncbi-tools++/algo/blast/api/deltablast_options.hpp
include/ncbi-tools++/algo/blast/api/disc_nucl_options.hpp
include/ncbi-tools++/algo/blast/api/effsearchspace_calc.hpp
include/ncbi-tools++/algo/blast/api/hspstream_queue.hpp
include/ncbi-tools++/algo/blast/api/local_blast.hpp
include/ncbi-tools++/algo/blast/api/local_db_adapter.hpp
include/ncbi-tools++/algo/blast/api/local_search.hpp
include/ncbi-tools++/algo/blast/api/msa_pssm_input.hpp
include/ncbi-tools++/algo/blast/api/objmgr_query_data.hpp
include/ncbi-tools++/algo/blast/api/objmgrfree_query_data.hpp
include/ncbi-tools++/algo/blast/api/phiblast_nucl_options.hpp
include/ncbi-tools++/algo/blast/api/phiblast_prot_options.hpp
include/ncbi-tools++/algo/blast/api/prelim_stage.hpp
include/ncbi-tools++/algo/blast/api/psi_pssm_input.hpp
include/ncbi-tools++/algo/blast/api/psibl2seq.hpp
include/ncbi-tools++/algo/blast/api/psiblast.hpp
include/ncbi-tools++/algo/blast/api/psiblast_iteration.hpp
include/ncbi-tools++/algo/blast/api/psiblast_options.hpp
include/ncbi-tools++/algo/blast/api/pssm_engine.hpp
include/ncbi-tools++/algo/blast/api/pssm_input.hpp
include/ncbi-tools++/algo/blast/api/query_data.hpp
include/ncbi-tools++/algo/blast/api/remote_blast.hpp
include/ncbi-tools++/algo/blast/api/remote_search.hpp
include/ncbi-tools++/algo/blast/api/repeats_filter.hpp
include/ncbi-tools++/algo/blast/api/rps_aux.hpp
include/ncbi-tools++/algo/blast/api/rpsblast_local.hpp
include/ncbi-tools++/algo/blast/api/rpstblastn_options.hpp
include/ncbi-tools++/algo/blast/api/search_strategy.hpp
include/ncbi-tools++/algo/blast/api/seedtop.hpp
include/ncbi-tools++/algo/blast/api/seqinfosrc_seqdb.hpp
include/ncbi-tools++/algo/blast/api/seqinfosrc_seqvec.hpp
include/ncbi-tools++/algo/blast/api/seqsrc_multiseq.hpp
include/ncbi-tools++/algo/blast/api/seqsrc_seqdb.hpp
include/ncbi-tools++/algo/blast/api/setup_factory.hpp
include/ncbi-tools++/algo/blast/api/sseqloc.hpp
include/ncbi-tools++/algo/blast/api/subj_ranges_set.hpp
include/ncbi-tools++/algo/blast/api/tblastn_options.hpp
include/ncbi-tools++/algo/blast/api/tblastx_options.hpp
include/ncbi-tools++/algo/blast/api/traceback_stage.hpp
include/ncbi-tools++/algo/blast/api/uniform_search.hpp
include/ncbi-tools++/algo/blast/api/version.hpp
include/ncbi-tools++/algo/blast/api/windowmask_filter.hpp
include/ncbi-tools++/algo/blast/blastinput/blast_args.hpp
include/ncbi-tools++/algo/blast/blastinput/blast_fasta_input.hpp
include/ncbi-tools++/algo/blast/blastinput/blast_input.hpp
include/ncbi-tools++/algo/blast/blastinput/blast_input_aux.hpp
include/ncbi-tools++/algo/blast/blastinput/blast_scope_src.hpp
include/ncbi-tools++/algo/blast/blastinput/blastn_args.hpp
include/ncbi-tools++/algo/blast/blastinput/blastp_args.hpp
include/ncbi-tools++/algo/blast/blastinput/blastx_args.hpp
include/ncbi-tools++/algo/blast/blastinput/cmdline_flags.hpp
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include/ncbi-tools++/algo/blast/blastinput/psiblast_args.hpp
include/ncbi-tools++/algo/blast/blastinput/rmblastn_args.hpp
include/ncbi-tools++/algo/blast/blastinput/rpsblast_args.hpp
include/ncbi-tools++/algo/blast/blastinput/rpstblastn_args.hpp
include/ncbi-tools++/algo/blast/blastinput/tblastn_args.hpp
include/ncbi-tools++/algo/blast/blastinput/tblastx_args.hpp
include/ncbi-tools++/algo/blast/composition_adjustment/compo_heap.h
include/ncbi-tools++/algo/blast/composition_adjustment/compo_mode_condition.h
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include/ncbi-tools++/algo/blast/composition_adjustment/matrix_frequency_data.h
include/ncbi-tools++/algo/blast/composition_adjustment/nlm_linear_algebra.h
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include/ncbi-tools++/algo/blast/composition_adjustment/smith_waterman.h
include/ncbi-tools++/algo/blast/composition_adjustment/unified_pvalues.h
include/ncbi-tools++/algo/blast/core/aa_ungapped.h
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include/ncbi-tools++/algo/blast/core/blast_util.h
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include/ncbi-tools++/algo/blast/core/gencode_singleton.h
include/ncbi-tools++/algo/blast/core/greedy_align.h
include/ncbi-tools++/algo/blast/core/hspfilter_besthit.h
include/ncbi-tools++/algo/blast/core/hspfilter_collector.h
include/ncbi-tools++/algo/blast/core/hspfilter_culling.h
include/ncbi-tools++/algo/blast/core/link_hsps.h
include/ncbi-tools++/algo/blast/core/lookup_util.h
include/ncbi-tools++/algo/blast/core/lookup_wrap.h
include/ncbi-tools++/algo/blast/core/mb_indexed_lookup.h
include/ncbi-tools++/algo/blast/core/na_ungapped.h
include/ncbi-tools++/algo/blast/core/ncbi_math.h
include/ncbi-tools++/algo/blast/core/ncbi_std.h
include/ncbi-tools++/algo/blast/core/pattern.h
include/ncbi-tools++/algo/blast/core/phi_extend.h
include/ncbi-tools++/algo/blast/core/phi_gapalign.h
include/ncbi-tools++/algo/blast/core/phi_lookup.h
include/ncbi-tools++/algo/blast/core/split_query.h
include/ncbi-tools++/algo/blast/dbindex/dbindex.hpp
include/ncbi-tools++/algo/blast/dbindex/dbindex_sp.hpp
include/ncbi-tools++/algo/blast/dbindex/sequence_istream.hpp
include/ncbi-tools++/algo/blast/dbindex/sequence_istream_bdb.hpp
include/ncbi-tools++/algo/blast/dbindex/sequence_istream_fasta.hpp
include/ncbi-tools++/algo/blast/format/blast_format.hpp
include/ncbi-tools++/algo/blast/format/blastfmtutil.hpp
include/ncbi-tools++/algo/blast/format/blastxml2_format.hpp
include/ncbi-tools++/algo/blast/format/blastxml_format.hpp
include/ncbi-tools++/algo/blast/format/build_archive.hpp
include/ncbi-tools++/algo/blast/format/data4xml2format.hpp
include/ncbi-tools++/algo/blast/format/data4xmlformat.hpp
include/ncbi-tools++/algo/blast/format/vecscreen_run.hpp
include/ncbi-tools++/algo/blast/igblast/igblast.hpp
include/ncbi-tools++/algo/dustmask/sdust.tex
include/ncbi-tools++/algo/dustmask/symdust.hpp
include/ncbi-tools++/algo/segmask/segmask.hpp
include/ncbi-tools++/algo/winmask/README.API
include/ncbi-tools++/algo/winmask/seq_masker.hpp
include/ncbi-tools++/algo/winmask/seq_masker_cache_boost.hpp
include/ncbi-tools++/algo/winmask/seq_masker_istat.hpp
include/ncbi-tools++/algo/winmask/seq_masker_istat_ascii.hpp
include/ncbi-tools++/algo/winmask/seq_masker_istat_bin.hpp
include/ncbi-tools++/algo/winmask/seq_masker_istat_factory.hpp
include/ncbi-tools++/algo/winmask/seq_masker_istat_oascii.hpp
include/ncbi-tools++/algo/winmask/seq_masker_istat_obinary.hpp
include/ncbi-tools++/algo/winmask/seq_masker_ostat.hpp
include/ncbi-tools++/algo/winmask/seq_masker_ostat_ascii.hpp
include/ncbi-tools++/algo/winmask/seq_masker_ostat_bin.hpp
include/ncbi-tools++/algo/winmask/seq_masker_ostat_factory.hpp
include/ncbi-tools++/algo/winmask/seq_masker_ostat_opt.hpp
include/ncbi-tools++/algo/winmask/seq_masker_ostat_opt_ascii.hpp
include/ncbi-tools++/algo/winmask/seq_masker_ostat_opt_bin.hpp
include/ncbi-tools++/algo/winmask/seq_masker_score.hpp
include/ncbi-tools++/algo/winmask/seq_masker_score_mean.hpp
include/ncbi-tools++/algo/winmask/seq_masker_score_mean_glob.hpp
include/ncbi-tools++/algo/winmask/seq_masker_score_min.hpp
include/ncbi-tools++/algo/winmask/seq_masker_uset_array.hpp
include/ncbi-tools++/algo/winmask/seq_masker_uset_hash.hpp
include/ncbi-tools++/algo/winmask/seq_masker_uset_simple.hpp
include/ncbi-tools++/algo/winmask/seq_masker_util.hpp
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include/ncbi-tools++/algo/winmask/seq_masker_window_pattern.hpp
include/ncbi-tools++/algo/winmask/seq_masker_window_pattern_ambig.hpp
include/ncbi-tools++/algo/winmask/win_mask_config.hpp
include/ncbi-tools++/algo/winmask/win_mask_counts_converter.hpp
include/ncbi-tools++/algo/winmask/win_mask_dup_table.hpp
include/ncbi-tools++/algo/winmask/win_mask_gen_counts.hpp
include/ncbi-tools++/algo/winmask/win_mask_util.hpp
include/ncbi-tools++/cgi/caf.hpp
include/ncbi-tools++/cgi/caf_encoded.hpp
include/ncbi-tools++/cgi/caf_plain.hpp
include/ncbi-tools++/cgi/cgi_exception.hpp
include/ncbi-tools++/cgi/cgi_serial.hpp
include/ncbi-tools++/cgi/cgi_session.hpp
include/ncbi-tools++/cgi/cgi_util.hpp
include/ncbi-tools++/cgi/cgiapp.hpp
include/ncbi-tools++/cgi/cgiapp_cached.hpp
include/ncbi-tools++/cgi/cgictx.hpp
include/ncbi-tools++/cgi/error_codes.hpp
include/ncbi-tools++/cgi/impl/cgi_entry_reader.hpp
include/ncbi-tools++/cgi/ncbicgi.hpp
include/ncbi-tools++/cgi/ncbicgir.hpp
include/ncbi-tools++/cgi/ncbires.hpp
include/ncbi-tools++/cgi/ref_args.hpp
include/ncbi-tools++/cgi/user_agent.hpp
include/ncbi-tools++/common/config/ncbiconf_msvc.h
include/ncbi-tools++/common/config/ncbiconf_msvc_site.h
include/ncbi-tools++/common/config/ncbiconf_universal.h
include/ncbi-tools++/common/config/ncbiconf_xcode.h
include/ncbi-tools++/common/config/ncbiconf_xcode_site.h
include/ncbi-tools++/common/header_template.hpp
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include/ncbi-tools++/common/ncbi_export.h
include/ncbi-tools++/common/ncbi_package_ver.h
include/ncbi-tools++/common/ncbi_pch_impl.hpp
include/ncbi-tools++/common/ncbi_skew_guard.h
include/ncbi-tools++/common/ncbi_source_ver.h
include/ncbi-tools++/common/ncbiconf_impl.h
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include/ncbi-tools++/connect/connect_export.h
include/ncbi-tools++/connect/email_diag_handler.hpp
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include/ncbi-tools++/connect/ext/ncbi_iprange.h
include/ncbi-tools++/connect/ext/ncbi_localnet.h
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include/ncbi-tools++/connect/ncbi_conn_reader_writer.hpp
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include/ncbi-tools++/connect/ncbi_core_cxx.hpp
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include/ncbi-tools++/connect/ncbi_namedpipe.hpp
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include/ncbi-tools++/connect/ncbi_sendmail.h
include/ncbi-tools++/connect/ncbi_server_info.h
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include/ncbi-tools++/connect/ncbi_service_connector.h
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include/ncbi-tools++/connect/ncbi_userhost.hpp
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include/ncbi-tools++/connect/server.hpp
include/ncbi-tools++/connect/server_monitor.hpp
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include/ncbi-tools++/connect/services/neticache_client.hpp
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include/ncbi-tools++/corelib/ncbi_url.hpp
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include/ncbi-tools++/corelib/ncbimempool.hpp
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include/ncbi-tools++/corelib/ncbimtx.hpp
include/ncbi-tools++/corelib/ncbimtx.inl
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include/ncbi-tools++/corelib/ncbireg.hpp
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include/ncbi-tools++/corelib/obj_pool.hpp
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include/ncbi-tools++/corelib/request_status.hpp
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include/ncbi-tools++/objects/biblio/ArticleId.hpp
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include/ncbi-tools++/objects/biblio/Auth_list.hpp
include/ncbi-tools++/objects/biblio/Auth_list_.hpp
include/ncbi-tools++/objects/biblio/Author.hpp
include/ncbi-tools++/objects/biblio/Author_.hpp
include/ncbi-tools++/objects/biblio/CitRetract.hpp
include/ncbi-tools++/objects/biblio/CitRetract_.hpp
include/ncbi-tools++/objects/biblio/Cit_art.hpp
include/ncbi-tools++/objects/biblio/Cit_art_.hpp
include/ncbi-tools++/objects/biblio/Cit_book.hpp
include/ncbi-tools++/objects/biblio/Cit_book_.hpp
include/ncbi-tools++/objects/biblio/Cit_gen.hpp
include/ncbi-tools++/objects/biblio/Cit_gen_.hpp
include/ncbi-tools++/objects/biblio/Cit_jour.hpp
include/ncbi-tools++/objects/biblio/Cit_jour_.hpp
include/ncbi-tools++/objects/biblio/Cit_let.hpp
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include/ncbi-tools++/objects/biblio/Cit_pat.hpp
include/ncbi-tools++/objects/biblio/Cit_pat_.hpp
include/ncbi-tools++/objects/biblio/Cit_proc.hpp
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include/ncbi-tools++/objects/biblio/MedlineUID.hpp
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include/ncbi-tools++/objects/biblio/Meeting.hpp
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include/ncbi-tools++/objects/biblio/PmcPid.hpp
include/ncbi-tools++/objects/biblio/PmcPid_.hpp
include/ncbi-tools++/objects/biblio/PubMedId.hpp
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include/ncbi-tools++/objects/biblio/PubStatus.hpp
include/ncbi-tools++/objects/biblio/PubStatusDate.hpp
include/ncbi-tools++/objects/biblio/PubStatusDateSet.hpp
include/ncbi-tools++/objects/biblio/PubStatusDateSet_.hpp
include/ncbi-tools++/objects/biblio/PubStatusDate_.hpp
include/ncbi-tools++/objects/biblio/PubStatus_.hpp
include/ncbi-tools++/objects/biblio/Title.hpp
include/ncbi-tools++/objects/biblio/Title_.hpp
include/ncbi-tools++/objects/biblio/biblio__.hpp
include/ncbi-tools++/objects/biblio/biblio_macros.hpp
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include/ncbi-tools++/objects/biotree/DistanceMatrix.hpp
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include/ncbi-tools++/objects/biotree/NodeFeature_.hpp
include/ncbi-tools++/objects/biotree/NodeSet.hpp
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include/ncbi-tools++/objects/blast/Blast4_database_info.hpp
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include/ncbi-tools++/objects/blast/Blast4_frame_type.hpp
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include/ncbi-tools++/objects/blast/Blast4_matrix_id.hpp
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include/ncbi-tools++/objects/insdseq/INSDStrucComment.hpp
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include/ncbi-tools++/objmgr/split/place_id.hpp
include/ncbi-tools++/objmgr/split/size.hpp
include/ncbi-tools++/objmgr/split/split_blob.hpp
include/ncbi-tools++/objmgr/split/split_exceptions.hpp
include/ncbi-tools++/objmgr/table_field.hpp
include/ncbi-tools++/objmgr/tse_handle.hpp
include/ncbi-tools++/objmgr/unsupp_editsaver.hpp
include/ncbi-tools++/objmgr/util/create_defline.hpp
include/ncbi-tools++/objmgr/util/feature.hpp
include/ncbi-tools++/objmgr/util/obj_sniff.hpp
include/ncbi-tools++/objmgr/util/seq_align_util.hpp
include/ncbi-tools++/objmgr/util/seq_loc_util.hpp
include/ncbi-tools++/objmgr/util/sequence.hpp
include/ncbi-tools++/objmgr/util/weight.hpp
include/ncbi-tools++/objtools/align_format/align_format_util.hpp
include/ncbi-tools++/objtools/align_format/aln_printer.hpp
include/ncbi-tools++/objtools/align_format/format_flags.hpp
include/ncbi-tools++/objtools/align_format/ilinkoutdb.hpp
include/ncbi-tools++/objtools/align_format/seqalignfilter.hpp
include/ncbi-tools++/objtools/align_format/showalign.hpp
include/ncbi-tools++/objtools/align_format/showdefline.hpp
include/ncbi-tools++/objtools/align_format/tabular.hpp
include/ncbi-tools++/objtools/align_format/vectorscreen.hpp
include/ncbi-tools++/objtools/alnmgr/aln_asn_reader.hpp
include/ncbi-tools++/objtools/alnmgr/aln_builders.hpp
include/ncbi-tools++/objtools/alnmgr/aln_container.hpp
include/ncbi-tools++/objtools/alnmgr/aln_converters.hpp
include/ncbi-tools++/objtools/alnmgr/aln_explorer.hpp
include/ncbi-tools++/objtools/alnmgr/aln_generators.hpp
include/ncbi-tools++/objtools/alnmgr/aln_rng_coll_oper.hpp
include/ncbi-tools++/objtools/alnmgr/aln_seqid.hpp
include/ncbi-tools++/objtools/alnmgr/aln_serial.hpp
include/ncbi-tools++/objtools/alnmgr/aln_stats.hpp
include/ncbi-tools++/objtools/alnmgr/aln_tests.hpp
include/ncbi-tools++/objtools/alnmgr/aln_user_options.hpp
include/ncbi-tools++/objtools/alnmgr/alndiag.hpp
include/ncbi-tools++/objtools/alnmgr/alnexception.hpp
include/ncbi-tools++/objtools/alnmgr/alnmap.hpp
include/ncbi-tools++/objtools/alnmgr/alnmatch.hpp
include/ncbi-tools++/objtools/alnmgr/alnmerger.hpp
include/ncbi-tools++/objtools/alnmgr/alnmix.hpp
include/ncbi-tools++/objtools/alnmgr/alnpos_ci.hpp
include/ncbi-tools++/objtools/alnmgr/alnsegments.hpp
include/ncbi-tools++/objtools/alnmgr/alnseq.hpp
include/ncbi-tools++/objtools/alnmgr/alntext.hpp
include/ncbi-tools++/objtools/alnmgr/alnvec.hpp
include/ncbi-tools++/objtools/alnmgr/alnvec_iterator.hpp
include/ncbi-tools++/objtools/alnmgr/pairwise_aln.hpp
include/ncbi-tools++/objtools/alnmgr/score_builder_base.hpp
include/ncbi-tools++/objtools/alnmgr/seqid_comp.hpp
include/ncbi-tools++/objtools/alnmgr/seqids_extractor.hpp
include/ncbi-tools++/objtools/alnmgr/sparse_aln.hpp
include/ncbi-tools++/objtools/alnmgr/sparse_ci.hpp
include/ncbi-tools++/objtools/alnmgr/task_progress.hpp
include/ncbi-tools++/objtools/blast/blastdb_format/blastdb_dataextract.hpp
include/ncbi-tools++/objtools/blast/blastdb_format/blastdb_formatter.hpp
include/ncbi-tools++/objtools/blast/blastdb_format/blastdb_seqid.hpp
include/ncbi-tools++/objtools/blast/blastdb_format/invalid_data_exception.hpp
include/ncbi-tools++/objtools/blast/blastdb_format/seq_writer.hpp
include/ncbi-tools++/objtools/blast/gene_info_reader/file_utils.hpp
include/ncbi-tools++/objtools/blast/gene_info_reader/gene_info.hpp
include/ncbi-tools++/objtools/blast/gene_info_reader/gene_info_reader.hpp
include/ncbi-tools++/objtools/blast/seqdb_reader/column_reader.hpp
include/ncbi-tools++/objtools/blast/seqdb_reader/impl/seqdbatlas.hpp
include/ncbi-tools++/objtools/blast/seqdb_reader/impl/seqdbcol.hpp
include/ncbi-tools++/objtools/blast/seqdb_reader/impl/seqdbfile.hpp
include/ncbi-tools++/objtools/blast/seqdb_reader/impl/seqdbgeneral.hpp
include/ncbi-tools++/objtools/blast/seqdb_reader/impl/seqdbisam.hpp
include/ncbi-tools++/objtools/blast/seqdb_reader/impl/seqdbtax.hpp
include/ncbi-tools++/objtools/blast/seqdb_reader/impl/seqdbvol.hpp
include/ncbi-tools++/objtools/blast/seqdb_reader/seqdb.hpp
include/ncbi-tools++/objtools/blast/seqdb_reader/seqdbblob.hpp
include/ncbi-tools++/objtools/blast/seqdb_reader/seqdbcommon.hpp
include/ncbi-tools++/objtools/blast/seqdb_reader/seqdbexpert.hpp
include/ncbi-tools++/objtools/blast/seqdb_writer/build_db.hpp
include/ncbi-tools++/objtools/blast/seqdb_writer/impl/criteria.hpp
include/ncbi-tools++/objtools/blast/seqdb_writer/multisource_util.hpp
include/ncbi-tools++/objtools/blast/seqdb_writer/taxid_set.hpp
include/ncbi-tools++/objtools/blast/seqdb_writer/writedb.hpp
include/ncbi-tools++/objtools/blast/seqdb_writer/writedb_convert.hpp
include/ncbi-tools++/objtools/blast/seqdb_writer/writedb_error.hpp
include/ncbi-tools++/objtools/blast/seqdb_writer/writedb_files.hpp
include/ncbi-tools++/objtools/blast/seqdb_writer/writedb_general.hpp
include/ncbi-tools++/objtools/blast/seqdb_writer/writedb_isam.hpp
include/ncbi-tools++/objtools/blast/services/blast_services.hpp
include/ncbi-tools++/objtools/cleanup/autogenerated_cleanup.hpp
include/ncbi-tools++/objtools/cleanup/cleanup.hpp
include/ncbi-tools++/objtools/cleanup/cleanup_change.hpp
include/ncbi-tools++/objtools/cleanup/newcleanup.hpp
include/ncbi-tools++/objtools/data_loaders/blastdb/bdbloader.hpp
include/ncbi-tools++/objtools/data_loaders/blastdb/bdbloader_rmt.hpp
include/ncbi-tools++/objtools/data_loaders/blastdb/blastdb_adapter.hpp
include/ncbi-tools++/objtools/data_loaders/genbank/blob_id.hpp
include/ncbi-tools++/objtools/data_loaders/genbank/cache/reader_cache.hpp
include/ncbi-tools++/objtools/data_loaders/genbank/cache/reader_cache_entry.hpp
include/ncbi-tools++/objtools/data_loaders/genbank/cache/reader_cache_params.h
include/ncbi-tools++/objtools/data_loaders/genbank/cache/writer_cache.hpp
include/ncbi-tools++/objtools/data_loaders/genbank/cache/writer_cache_entry.hpp
include/ncbi-tools++/objtools/data_loaders/genbank/gbloader.hpp
include/ncbi-tools++/objtools/data_loaders/genbank/gbloader_params.h
include/ncbi-tools++/objtools/data_loaders/genbank/gicache/reader_gicache.hpp
include/ncbi-tools++/objtools/data_loaders/genbank/gicache/reader_gicache_entry.hpp
include/ncbi-tools++/objtools/data_loaders/genbank/gicache/reader_gicache_params.h
include/ncbi-tools++/objtools/data_loaders/genbank/id1/reader_id1.hpp
include/ncbi-tools++/objtools/data_loaders/genbank/id1/reader_id1_entry.hpp
include/ncbi-tools++/objtools/data_loaders/genbank/id1/reader_id1_params.h
include/ncbi-tools++/objtools/data_loaders/genbank/id2/reader_id2.hpp
include/ncbi-tools++/objtools/data_loaders/genbank/id2/reader_id2_entry.hpp
include/ncbi-tools++/objtools/data_loaders/genbank/id2/reader_id2_params.h
include/ncbi-tools++/objtools/data_loaders/genbank/impl/cache_manager.hpp
include/ncbi-tools++/objtools/data_loaders/genbank/impl/dispatcher.hpp
include/ncbi-tools++/objtools/data_loaders/genbank/impl/gbload_util.hpp
include/ncbi-tools++/objtools/data_loaders/genbank/impl/incr_time.hpp
include/ncbi-tools++/objtools/data_loaders/genbank/impl/info_cache.hpp
include/ncbi-tools++/objtools/data_loaders/genbank/impl/processor.hpp
include/ncbi-tools++/objtools/data_loaders/genbank/impl/processors.hpp
include/ncbi-tools++/objtools/data_loaders/genbank/impl/reader_id1_base.hpp
include/ncbi-tools++/objtools/data_loaders/genbank/impl/reader_id2_base.hpp
include/ncbi-tools++/objtools/data_loaders/genbank/impl/reader_service.hpp
include/ncbi-tools++/objtools/data_loaders/genbank/impl/request_result.hpp
include/ncbi-tools++/objtools/data_loaders/genbank/impl/split_parser.hpp
include/ncbi-tools++/objtools/data_loaders/genbank/impl/standalone_result.hpp
include/ncbi-tools++/objtools/data_loaders/genbank/impl/statistics.hpp
include/ncbi-tools++/objtools/data_loaders/genbank/pubseq/reader_pubseq.hpp
include/ncbi-tools++/objtools/data_loaders/genbank/pubseq/reader_pubseq_entry.hpp
include/ncbi-tools++/objtools/data_loaders/genbank/pubseq/reader_pubseq_params.h
include/ncbi-tools++/objtools/data_loaders/genbank/pubseq2/reader_pubseq2.hpp
include/ncbi-tools++/objtools/data_loaders/genbank/pubseq2/reader_pubseq2_entry.hpp
include/ncbi-tools++/objtools/data_loaders/genbank/pubseq2/reader_pubseq2_params.h
include/ncbi-tools++/objtools/data_loaders/genbank/reader.hpp
include/ncbi-tools++/objtools/data_loaders/genbank/reader_interface.hpp
include/ncbi-tools++/objtools/data_loaders/genbank/reader_params.h
include/ncbi-tools++/objtools/data_loaders/genbank/reader_service_params.h
include/ncbi-tools++/objtools/data_loaders/genbank/reader_snp.hpp
include/ncbi-tools++/objtools/data_loaders/genbank/readers.hpp
include/ncbi-tools++/objtools/data_loaders/genbank/readers/cache/reader_cache.hpp
include/ncbi-tools++/objtools/data_loaders/genbank/readers/cache/writer_cache.hpp
include/ncbi-tools++/objtools/data_loaders/genbank/readers/id1/reader_id1.hpp
include/ncbi-tools++/objtools/data_loaders/genbank/readers/id2/reader_id2.hpp
include/ncbi-tools++/objtools/data_loaders/genbank/readers/pubseqos/reader_pubseq.hpp
include/ncbi-tools++/objtools/data_loaders/genbank/readers/pubseqos2/reader_pubseq2.hpp
include/ncbi-tools++/objtools/data_loaders/genbank/seqref.hpp
include/ncbi-tools++/objtools/data_loaders/genbank/writer.hpp
include/ncbi-tools++/objtools/data_loaders/genbank/writer_interface.hpp
include/ncbi-tools++/objtools/data_loaders/loaders.hpp
include/ncbi-tools++/objtools/edit/autodef.hpp
include/ncbi-tools++/objtools/edit/autodef_available_modifier.hpp
include/ncbi-tools++/objtools/edit/autodef_feature_clause.hpp
include/ncbi-tools++/objtools/edit/autodef_feature_clause_base.hpp
include/ncbi-tools++/objtools/edit/autodef_mod_combo.hpp
include/ncbi-tools++/objtools/edit/autodef_source_desc.hpp
include/ncbi-tools++/objtools/edit/autodef_source_group.hpp
include/ncbi-tools++/objtools/edit/capitalization_string.hpp
include/ncbi-tools++/objtools/edit/cds_fix.hpp
include/ncbi-tools++/objtools/edit/dblink_field.hpp
include/ncbi-tools++/objtools/edit/edit_exception.hpp
include/ncbi-tools++/objtools/edit/feattable_edit.hpp
include/ncbi-tools++/objtools/edit/field_handler.hpp
include/ncbi-tools++/objtools/edit/gaps_edit.hpp
include/ncbi-tools++/objtools/edit/gb_block_field.hpp
include/ncbi-tools++/objtools/edit/gene_utils.hpp
include/ncbi-tools++/objtools/edit/link_cds_mrna.hpp
include/ncbi-tools++/objtools/edit/loc_edit.hpp
include/ncbi-tools++/objtools/edit/mail_report.hpp
include/ncbi-tools++/objtools/edit/promote.hpp
include/ncbi-tools++/objtools/edit/seq_entry_edit.hpp
include/ncbi-tools++/objtools/edit/seqid_guesser.hpp
include/ncbi-tools++/objtools/edit/string_constraint.hpp
include/ncbi-tools++/objtools/edit/struc_comm_field.hpp
include/ncbi-tools++/objtools/edit/text_desc_field.hpp
include/ncbi-tools++/objtools/error_codes.hpp
include/ncbi-tools++/objtools/format/cigar_formatter.hpp
include/ncbi-tools++/objtools/format/context.hpp
include/ncbi-tools++/objtools/format/embl_formatter.hpp
include/ncbi-tools++/objtools/format/embl_gather.hpp
include/ncbi-tools++/objtools/format/feature_gather.hpp
include/ncbi-tools++/objtools/format/flat_expt.hpp
include/ncbi-tools++/objtools/format/flat_file_config.hpp
include/ncbi-tools++/objtools/format/flat_file_generator.hpp
include/ncbi-tools++/objtools/format/format_item_ostream.hpp
include/ncbi-tools++/objtools/format/formatter.hpp
include/ncbi-tools++/objtools/format/ftable_formatter.hpp
include/ncbi-tools++/objtools/format/ftable_gather.hpp
include/ncbi-tools++/objtools/format/gather_items.hpp
include/ncbi-tools++/objtools/format/gather_iter.hpp
include/ncbi-tools++/objtools/format/gbseq_formatter.hpp
include/ncbi-tools++/objtools/format/genbank_formatter.hpp
include/ncbi-tools++/objtools/format/genbank_gather.hpp
include/ncbi-tools++/objtools/format/gff3_formatter.hpp
include/ncbi-tools++/objtools/format/gff_formatter.hpp
include/ncbi-tools++/objtools/format/gff_gather.hpp
include/ncbi-tools++/objtools/format/item_formatter.hpp
include/ncbi-tools++/objtools/format/item_ostream.hpp
include/ncbi-tools++/objtools/format/items/accession_item.hpp
include/ncbi-tools++/objtools/format/items/alignment_item.hpp
include/ncbi-tools++/objtools/format/items/basecount_item.hpp
include/ncbi-tools++/objtools/format/items/comment_item.hpp
include/ncbi-tools++/objtools/format/items/contig_item.hpp
include/ncbi-tools++/objtools/format/items/ctrl_items.hpp
include/ncbi-tools++/objtools/format/items/date_item.hpp
include/ncbi-tools++/objtools/format/items/dbsource_item.hpp
include/ncbi-tools++/objtools/format/items/defline_item.hpp
include/ncbi-tools++/objtools/format/items/feature_item.hpp
include/ncbi-tools++/objtools/format/items/flat_qual_slots.hpp
include/ncbi-tools++/objtools/format/items/flat_seqloc.hpp
include/ncbi-tools++/objtools/format/items/gap_item.hpp
include/ncbi-tools++/objtools/format/items/gene_finder.hpp
include/ncbi-tools++/objtools/format/items/genome_item.hpp
include/ncbi-tools++/objtools/format/items/genome_project_item.hpp
include/ncbi-tools++/objtools/format/items/html_anchor_item.hpp
include/ncbi-tools++/objtools/format/items/item.hpp
include/ncbi-tools++/objtools/format/items/item_base.hpp
include/ncbi-tools++/objtools/format/items/keywords_item.hpp
include/ncbi-tools++/objtools/format/items/locus_item.hpp
include/ncbi-tools++/objtools/format/items/origin_item.hpp
include/ncbi-tools++/objtools/format/items/primary_item.hpp
include/ncbi-tools++/objtools/format/items/qualifiers.hpp
include/ncbi-tools++/objtools/format/items/reference_item.hpp
include/ncbi-tools++/objtools/format/items/segment_item.hpp
include/ncbi-tools++/objtools/format/items/sequence_item.hpp
include/ncbi-tools++/objtools/format/items/source_item.hpp
include/ncbi-tools++/objtools/format/items/tsa_item.hpp
include/ncbi-tools++/objtools/format/items/version_item.hpp
include/ncbi-tools++/objtools/format/items/wgs_item.hpp
include/ncbi-tools++/objtools/format/ostream_text_ostream.hpp
include/ncbi-tools++/objtools/format/sam_formatter.hpp
include/ncbi-tools++/objtools/format/text_ostream.hpp
include/ncbi-tools++/objtools/readers/agp_converter.hpp
include/ncbi-tools++/objtools/readers/agp_read.hpp
include/ncbi-tools++/objtools/readers/agp_seq_entry.hpp
include/ncbi-tools++/objtools/readers/agp_util.hpp
include/ncbi-tools++/objtools/readers/agp_validate_reader.hpp
include/ncbi-tools++/objtools/readers/aln_reader.hpp
include/ncbi-tools++/objtools/readers/bed_reader.hpp
include/ncbi-tools++/objtools/readers/cigar.hpp
include/ncbi-tools++/objtools/readers/error_container.hpp
include/ncbi-tools++/objtools/readers/fasta.hpp
include/ncbi-tools++/objtools/readers/fasta_exception.hpp
include/ncbi-tools++/objtools/readers/featuredump.hpp
include/ncbi-tools++/objtools/readers/format_guess_ex.hpp
include/ncbi-tools++/objtools/readers/getfeature.hpp
include/ncbi-tools++/objtools/readers/gff2_data.hpp
include/ncbi-tools++/objtools/readers/gff2_reader.hpp
include/ncbi-tools++/objtools/readers/gff3_reader.hpp
include/ncbi-tools++/objtools/readers/gff3_sofa.hpp
include/ncbi-tools++/objtools/readers/gff_reader.hpp
include/ncbi-tools++/objtools/readers/glimmer_reader.hpp
include/ncbi-tools++/objtools/readers/gtf_reader.hpp
include/ncbi-tools++/objtools/readers/gvf_reader.hpp
include/ncbi-tools++/objtools/readers/idmapper.hpp
include/ncbi-tools++/objtools/readers/iidmapper.hpp
include/ncbi-tools++/objtools/readers/line_error.hpp
include/ncbi-tools++/objtools/readers/message_listener.hpp
include/ncbi-tools++/objtools/readers/microarray_reader.hpp
include/ncbi-tools++/objtools/readers/phrap.hpp
include/ncbi-tools++/objtools/readers/read_util.hpp
include/ncbi-tools++/objtools/readers/reader_base.hpp
include/ncbi-tools++/objtools/readers/reader_exception.hpp
include/ncbi-tools++/objtools/readers/reader_idgen.hpp
include/ncbi-tools++/objtools/readers/readfeat.hpp
include/ncbi-tools++/objtools/readers/rm_reader.hpp
include/ncbi-tools++/objtools/readers/source_mod_parser.hpp
include/ncbi-tools++/objtools/readers/source_mod_parser_wrapper.hpp
include/ncbi-tools++/objtools/readers/table_filter.hpp
include/ncbi-tools++/objtools/readers/ucscregion_reader.hpp
include/ncbi-tools++/objtools/readers/vcf_reader.hpp
include/ncbi-tools++/objtools/readers/wiggle_reader.hpp
include/ncbi-tools++/objtools/seqmasks_io/mask_bdb_reader.hpp
include/ncbi-tools++/objtools/seqmasks_io/mask_cmdline_args.hpp
include/ncbi-tools++/objtools/seqmasks_io/mask_fasta_reader.hpp
include/ncbi-tools++/objtools/seqmasks_io/mask_reader.hpp
include/ncbi-tools++/objtools/seqmasks_io/mask_writer.hpp
include/ncbi-tools++/objtools/seqmasks_io/mask_writer_blastdb_maskinfo.hpp
include/ncbi-tools++/objtools/seqmasks_io/mask_writer_fasta.hpp
include/ncbi-tools++/objtools/seqmasks_io/mask_writer_int.hpp
include/ncbi-tools++/objtools/seqmasks_io/mask_writer_seqloc.hpp
include/ncbi-tools++/objtools/seqmasks_io/mask_writer_tab.hpp
include/ncbi-tools++/objtools/simple/simple_om.hpp
include/ncbi-tools++/serial/delaybuf.hpp
include/ncbi-tools++/serial/enumvalues.hpp
include/ncbi-tools++/serial/error_codes.hpp
include/ncbi-tools++/serial/exception.hpp
include/ncbi-tools++/serial/impl/aliasinfo.hpp
include/ncbi-tools++/serial/impl/asntypes.hpp
include/ncbi-tools++/serial/impl/autoptrinfo.hpp
include/ncbi-tools++/serial/impl/choice.hpp
include/ncbi-tools++/serial/impl/choice.inl
include/ncbi-tools++/serial/impl/choiceptr.hpp
include/ncbi-tools++/serial/impl/classinfo.hpp
include/ncbi-tools++/serial/impl/classinfo.inl
include/ncbi-tools++/serial/impl/classinfob.hpp
include/ncbi-tools++/serial/impl/classinfob.inl
include/ncbi-tools++/serial/impl/classinfohelper.hpp
include/ncbi-tools++/serial/impl/continfo.hpp
include/ncbi-tools++/serial/impl/continfo.inl
include/ncbi-tools++/serial/impl/enumerated.hpp
include/ncbi-tools++/serial/impl/hookdata.hpp
include/ncbi-tools++/serial/impl/hookdatakey.hpp
include/ncbi-tools++/serial/impl/hookfunc.hpp
include/ncbi-tools++/serial/impl/item.hpp
include/ncbi-tools++/serial/impl/item.inl
include/ncbi-tools++/serial/impl/member.hpp
include/ncbi-tools++/serial/impl/member.inl
include/ncbi-tools++/serial/impl/memberid.hpp
include/ncbi-tools++/serial/impl/memberid.inl
include/ncbi-tools++/serial/impl/memberlist.hpp
include/ncbi-tools++/serial/impl/memberlist.inl
include/ncbi-tools++/serial/impl/objcopy.inl
include/ncbi-tools++/serial/impl/objectinfo.inl
include/ncbi-tools++/serial/impl/objectio.inl
include/ncbi-tools++/serial/impl/objectiter.inl
include/ncbi-tools++/serial/impl/objecttype.hpp
include/ncbi-tools++/serial/impl/objistr.inl
include/ncbi-tools++/serial/impl/objistrasnb.inl
include/ncbi-tools++/serial/impl/objistrimpl.hpp
include/ncbi-tools++/serial/impl/objistrxml.inl
include/ncbi-tools++/serial/impl/objlist.hpp
include/ncbi-tools++/serial/impl/objlist.inl
include/ncbi-tools++/serial/impl/objostr.inl
include/ncbi-tools++/serial/impl/objostrxml.inl
include/ncbi-tools++/serial/impl/objstack.hpp
include/ncbi-tools++/serial/impl/objstack.inl
include/ncbi-tools++/serial/impl/objstrasnb.hpp
include/ncbi-tools++/serial/impl/objstrasnb.inl
include/ncbi-tools++/serial/impl/pathhook.hpp
include/ncbi-tools++/serial/impl/ptrinfo.hpp
include/ncbi-tools++/serial/impl/ptrinfo.inl
include/ncbi-tools++/serial/impl/serialasndef.hpp
include/ncbi-tools++/serial/impl/stdtypeinfo.hpp
include/ncbi-tools++/serial/impl/stdtypes.hpp
include/ncbi-tools++/serial/impl/stdtypes.inl
include/ncbi-tools++/serial/impl/stdtypesimpl.hpp
include/ncbi-tools++/serial/impl/stltypes.hpp
include/ncbi-tools++/serial/impl/stltypesimpl.hpp
include/ncbi-tools++/serial/impl/timetypeinfo.hpp
include/ncbi-tools++/serial/impl/typeinfo.inl
include/ncbi-tools++/serial/impl/typeinfoimpl.hpp
include/ncbi-tools++/serial/impl/typemap.hpp
include/ncbi-tools++/serial/impl/typemapimpl.hpp
include/ncbi-tools++/serial/impl/typeref.hpp
include/ncbi-tools++/serial/impl/typeref.inl
include/ncbi-tools++/serial/impl/variant.hpp
include/ncbi-tools++/serial/impl/variant.inl
include/ncbi-tools++/serial/iterator.hpp
include/ncbi-tools++/serial/objcopy.hpp
include/ncbi-tools++/serial/objectinfo.hpp
include/ncbi-tools++/serial/objectio.hpp
include/ncbi-tools++/serial/objectiter.hpp
include/ncbi-tools++/serial/objhook.hpp
include/ncbi-tools++/serial/objistr.hpp
include/ncbi-tools++/serial/objistrasn.hpp
include/ncbi-tools++/serial/objistrasnb.hpp
include/ncbi-tools++/serial/objistrjson.hpp
include/ncbi-tools++/serial/objistrxml.hpp
include/ncbi-tools++/serial/objostr.hpp
include/ncbi-tools++/serial/objostrasn.hpp
include/ncbi-tools++/serial/objostrasnb.hpp
include/ncbi-tools++/serial/objostrjson.hpp
include/ncbi-tools++/serial/objostrxml.hpp
include/ncbi-tools++/serial/pack_string.hpp
include/ncbi-tools++/serial/rpcbase.hpp
include/ncbi-tools++/serial/serial.hpp
include/ncbi-tools++/serial/serialasn.hpp
include/ncbi-tools++/serial/serialbase.hpp
include/ncbi-tools++/serial/serialdef.hpp
include/ncbi-tools++/serial/serialimpl.hpp
include/ncbi-tools++/serial/serializable.hpp
include/ncbi-tools++/serial/serialutil.hpp
include/ncbi-tools++/serial/streamiter.hpp
include/ncbi-tools++/serial/typeinfo.hpp
include/ncbi-tools++/util/align_range.hpp
include/ncbi-tools++/util/align_range_coll.hpp
include/ncbi-tools++/util/align_range_oper.hpp
include/ncbi-tools++/util/arg_regexp.hpp
include/ncbi-tools++/util/ascii85.hpp
include/ncbi-tools++/util/bitset/bitset_debug.hpp
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