# New ports collection makefile for: py-biopython # Date created: 28 July 2000 # Whom: Johann Visagie # # $FreeBSD$ # PORTNAME= biopython PORTVERSION= 1.51 CATEGORIES= biology python MASTER_SITES= http://www.biopython.org/DIST/ PKGNAMEPREFIX= ${PYTHON_PKGNAMEPREFIX} MAINTAINER= mauricio@arareko.net COMMENT= A collection of Python modules for bioinformatics BUILD_DEPENDS= ${PYNUMPY} \ ${PYTHON_SITELIBDIR}/mx/TextTools/__init__.py:${PORTSDIR}/lang/py-mx-base RUN_DEPENDS= ${BUILD_DEPENDS} USE_PYTHON= 2.4+ USE_PYDISTUTILS=yes .if !defined(WITHOUT_REPORTLAB) BUILD_DEPENDS+= ${PYTHON_SITELIBDIR}/reportlab/__init__.py:${PORTSDIR}/print/py-reportlab RUN_DEPENDS+= ${PYTHON_SITELIBDIR}/reportlab/__init__.py:${PORTSDIR}/print/py-reportlab .endif .include bsd-ports-gnome' title='freebsd-ports-gnome Git repository'/>
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* - Attach science/netcdf4chinsan2009-01-011-0/+1
* - Connect hdf5-18miwi2008-11-241-0/+1
* Modular toolkit for Data Processing (MDP) is a Python data processingmiwi2008-09-281-0/+1
* py-hcluster library provides Python functions formiwi2008-09-271-0/+1
* liboglappth is a support library packages for science/ghemicalmaho2008-08-211-0/+1
* - New port silo-4.6.1beech2008-07-211-0/+1
* This port installs python bindings for openbabel.miwi2008-07-191-0/+1
* Pycdf is a python interface to the Unidata netCDF library. It provides anmiwi2008-06-031-0/+1
* [NEW PORT] graphics/2d-rewriter: Fractals generator based on pattern matching...edwin2008-05-241-0/+1
* Jmol is a Java molecular viewer formiwi2008-05-181-0/+1
* Colt is a package for scalable scientific and technical computing in Java. Ithq2008-05-021-0/+1
* DTI visualization software from Stanford.tabthorpe2008-02-251-0/+1
* Move speedcrunch from science to math.itetcu2007-08-141-1/+0
* SpeedCrunch is a multiplatform desktop calculator for power users.itetcu2007-08-141-0/+1
* - science/liblr is moved to science/liblinear (project renamed)rafan2007-07-281-1/+1
* Code_Saturne is EDF's general purpose computational fluid dynamicsthierry2007-06-181-0/+5
* Add liblr-1.0, a library for large regularized logistic regression.rafan2007-05-271-0/+1
* The chemical-mime-data package is a collection of data files to add support forpav2007-05-251-0/+1
* The Blue Obelisk Data Repository lists many important chemoinformatics datapav2007-05-251-0/+1
* Parallel-NetCDF is a library providing high-performance I/O while stillmiwi2007-04-301-0/+1
* NIfTI-1 is a new Analyze-style data format, proposed by the NIfTI DFWGmiwi2007-04-281-0/+1
* 2007-03-27 emulators/kmamerun: Project was abandoned 4 years ago and expects ...miwi2007-04-111-1/+0
* The CFD General Notation System (CGNS) provides a standard for recording andthierry2007-04-011-0/+1
* GAMESS is freely available ab-initio molecular orbitalmaho2007-03-131-0/+1
* 2007-01-01 graphics/teddy: No new releases in the past 4 yearsmiwi2007-01-061-1/+0
* Libint is a library for evaluating ERI (electron replusion integral)maho2006-12-291-0/+1
* add linsmith 0.99.3ijliao2006-12-221-0/+1
* - Reflect repocopy ofscience/py-scipy -> science/py-scipy03rafan2006-11-151-0/+1
* Add g3data 1.5.0, utility for extracting data from graphs.clsung2006-10-021-0/+1
* Paje is a graphical tool that displays traces produced during thedinoex2006-09-291-0/+1
* GTAMS Analyzer is a complete coding and analysis package. It is a "port" ofdinoex2006-09-281-0/+1
* Medit is an interactive mesh visualization software, developed by the Gammathierry2006-09-251-0/+1
* ITK is an open-source software toolkit for performing registration andalepulver2006-09-071-0/+1
* Gwyddion is a modular SPM (Scanning Probe Microsopy) data visualization andpav2006-08-131-0/+1
* Add p5-Algorithm-SVMLight 0.05, perl interface to SVMLightclsung2006-08-031-0/+1
* Add svmlight 6.01, an implementation of Support Vector Machines (SVMs)clsung2006-08-011-0/+1
* Add crf++ 0.42, yet Another CRF toolkit.clsung2006-07-281-0/+1
* Add ghmm 0.7.0a, general Hidden Markov Model Library in C.clsung2006-07-281-0/+1
* Add pcp 2.2, machine learning program for pattern classification.clsung2006-07-281-0/+1
* Add xmds , XMDS is a code generator that integrates equations;.rafan2006-07-201-0/+1
* Libghemical port. This port installs support libraries ofmaho2006-07-031-0/+1
* Objecto Oriented Finite Element Analysis of Real Material Microstructuresitetcu2006-06-131-0/+1
* CDO is a collection of command line Operators to manipulate and analyse Climatepav2006-06-111-0/+1
* Add science/minc2.thierry2006-04-301-0/+1
* ElmerPost - the Visualization of Numerical Results.thierry2006-04-251-0/+1
* ElmerFront - the Graphical User Interface.thierry2006-04-251-0/+1
* ElmerSolver - the Solution of Partial Differential Equations.thierry2006-04-251-0/+1
* HUTIter library for use in the Elmer FEM package.thierry2006-04-251-0/+1
* MATC language library used by Elmer FEM package.thierry2006-04-251-0/+1
* Input/Output Data base interface for use in the ELMER FEM package.thierry2006-04-251-0/+1
* ElmerGrid is a utility program for fast creation of structured 2D andthierry2006-04-251-0/+1
* A Mesh Generation Utility for use with the ELMER FEM package.thierry2006-04-251-0/+1
* A program for doing calculation on Smith Chart, similar in functionality tothierry2006-03-201-0/+1
* Add fasthenry , a multipole-accelerated inductance analysis program.garga2006-03-151-0/+1
* Add fastcap , a three-dimensional capacitance extraction program.garga2006-03-151-0/+1
* MINC (Medical Imaging NetCDF) is a medical imaging data format and anthierry2006-02-121-0/+1
* Remove expired port science/glensvd2006-02-081-1/+0
* Repocopy math/netcdf to science/netcdf, along with cdf, hdf and hdf5.thierry2006-01-311-0/+1
* Common Data Format (CDF) is a conceptual data abstraction for storingthierry2006-01-291-0/+1
* Add new port science/afnivd2006-01-261-0/+1
* The OpenFOAM (Open Field Operation and Manipulation) CFD Toolbox can simulatethierry2006-01-221-0/+1
* Add V_Sim, a program to visualize atomic structures such as crystals, grainthierry2005-12-111-0/+1
* GDL - GNU Data Language - is a free IDL (Interactive Data Language)thierry2005-11-01