"Wise2 is package that is focused on comparing DNA sequences at the level of its conceptual translation, regardless of sequencing error and introns. This really is a rewrite of the old wisetools package, which I wrote about 3 years ago. It can compare a single protein or a profile HMM to a genomic DNA sequence, and predict a gene structure. This is algorithm, called genewise, is one of the algorithms available in Wise2. There are other algorithms focused on EST data rather than genomic data, as well as some other algorithm curios." - from the web site (Ewan Birney) WWW: http://www.ebi.ac.uk/Wise2/ s://phantom.tfcis.org/~lantw44/git/freebsd-ports-gnome' title='freebsd-ports-gnome Git repository'/>
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* Fix extraction when using clamav option.wxs2011-01-081-1/+0
* Update to 4.1.2martymac2011-01-042-3/+3
* Update to 0.3.7makc2011-01-024-9/+12
* Garbage-collect expired ports:rene2011-01-017-76/+0
* Reset ijliao@FreeBSD.org due to maintainer-timeouts and long absence.linimon2010-12-281-1/+1
* - Update to 1.3.3dmm2010-12-242-4/+3
* Update to version 3.4.demon2010-12-202-3/+3
* Update cURL to 7.21.3 and fix its librtmp detection. In the process:roam2010-12-207-30/+118
* Update to 4.1.1martymac2010-12-092-5/+3
* Drop maintainership and remove MD5 checksumsahil2010-12-052-2/+1
* Sync to new bsd.autotools.mkade2010-12-0413-13/+13
* Net::FTPSSL is a class implementing a simple FTP client over a Securewen2010-12-025-0/+38
* - Revert to old distinfo and SAVE US FROM THE DOOM!mm2010-12-012-3/+3
* - Update distfile to match upstream sourcemm2010-12-012-3/+3
* - Remove PERL_SITELIBDIRsunpoet2010-12-012-5/+3
* Update to version 3.3.3.demon2010-11-292-3/+3
* Use MASTER_SITE_SUBDIR instead of rolling my own.uqs2010-11-261-1/+2
* Fix remaining MASTER_SITE_LOCAL abuses for my ports.uqs2010-11-261-1/+1
* Update to 3.3.5.1.jsa2010-11-252-3/+3
* - Stop removing shared dbus directories that are owned by dbus and kdehierpav2010-11-231-2/+0
* Update to version 3.3.2.demon2010-11-162-5/+4
* Update filezilla to 3.3.5.jsa2010-11-153-4/+15
* - Update mod_sql_tds to 4.13mm2010-11-152-4/+5
* Cleanup MASTER_SITES and since i'm here, remove MD5garga2010-11-122-8/+0
* - Install configuration files as *.sample to avoid overriding existing onessunpoet2010-11-093-7/+11
* - Update to 0.28.culot2010-11-092-9/+7
* Rename old ncftp port to "ncftp1".obrien2010-11-088-101/+2
* - Update to 1.3.3cmm2010-11-053-25/+7
* Remove expired ports:garga2010-11-046-77/+0
* Maintainer change. Returned to beech@beech2010-11-031-1/+1
* Pass maintainership back to Chris Petrik.makc2010-10-312-2/+1
* Mark as deprecated and set expiration date to 2010-12-30 for unmaintainedbapt2010-10-301-0/+2
* - Update to 1.3.3bmm2010-10-292-5/+4
* - Pass maintainership to submitterwen2010-10-271-1/+1
* Upgrade to 1.1.2.thierry2010-10-243-5/+9
* - Mass fixup of WWW: lines pkg-descr based on rubygems.org Homepage meta infopgollucci2010-10-201-1/+1
* Update to 0.3.6makc2010-10-174-10/+23
* Punt autoconf267->autoconf268ade2010-10-163-3/+3
* - Add missing LICENSEmartymac2010-10-151-7/+9
* Missed multicast fix patches in previous commitkevlo2010-10-1112-118/+624
* There doesn't seem to be a KAME IPv6 patch for version 3.2.4 yet.obrien2010-10-061-3/+3
* Round one migration of ports from automake{19,110} to automake111ade2010-10-061-1/+1
* Update to 3.2.4.obrien2010-10-062-7/+4
* Import atftp-0.7kevlo2010-10-0519-0/+841
* Cleanup MASTER_SITESgarga2010-10-011-2/+1
* Mark BROKEN: does not fetch.erwin2010-09-301-0/+2
* Update MAINTAINER address for my portsmartymac2010-09-271-1/+1
* Update to 20100324wxs2010-09-2710-171/+172
* - only 13% of the p5- ports embed @comment $FreeBSD$:pgollucci2010-09-241-1/+0
* Change dependency on old p5-Compress-Zlib, p5-IO-Compress-Base,mm2010-09-211-3/+8
* Autotools update. Read ports/UPDATING 20100915 for details.ade2010-09-164-6/+7
* - Update rpms to 7.19.6-2.fc10nox2010-09-142-10/+11
* Update to curl-7.21.1; in the process:roam2010-09-139-122/+51
* - Update to 4.0.10decke2010-09-113-7/+6
* - Update MAINTAINER address for Ganael Laplanche <ganael.laplanche@martymac.org>pgollucci2010-09-071-1/+1
* Followup to the previous commit: fix the newly added patchesvd2010-09-073-39/+11
* Apply patch from upstream for CVE-2010-2252.vd2010-09-0710-1/+199
* - Update to 3.0sylvio2010-09-062-5/+5
* Use system pgrep instead of pidofmakc2010-08-303-1/+22
* - Update to 0.7.8pgollucci2010-08-30