/biology/
../
Makefile
ariadne
artemis
avida
babel
bamtools
bcftools
bedtools
biococoa
blat
bowtie
bowtie2
bwa
canu
cd-hit
cdbfasta
chemeq
clustalw
consed
crux
diamond
emboss
fasta
fasta3
fastdnaml
fastool
fastqc
fasttree
fastx-toolkit
fluctuate
garlic
gff2ps
gmap
gperiodic
grappa
hmmer
htslib
iolib
iqtree
jalview
jellyfish
kallisto
lagan
lamarc
libgtextutils
libsbml
linux-foldingathome
mafft
mapm3
migrate
molden
mopac
mrbayes
mummer
muscle
ncbi-blast+
ncbi-toolkit
njplot
p5-AcePerl
p5-Bio-ASN1-EntrezGene
p5-Bio-Coordinate
p5-Bio-Das-Lite
p5-Bio-Das
p5-Bio-FeatureIO
p5-Bio-GFF3
p5-Bio-Glite
p5-Bio-Graphics
p5-Bio-MAGETAB
p5-Bio-NEXUS
p5-Bio-Phylo
p5-Bio-SCF
p5-BioPerl-Run
p5-BioPerl
p5-TrimGalore
p5-transdecoder
paml
phrap
phred
phylip
phyml
plink
plinkseq
primer3
protomol
psi88
py-biom-format
py-biopython
py-bx-python
py-cutadapt
py-macs2
py-pysam
pycogent
pyfasta
python-nexus
recombine
ruby-bio
rubygem-bio
samtools
seaview
seqan-apps
seqan
seqan1
seqio
seqtools
sim4
slclust
ssaha
stacks
tRNAscan-SE
t_coffee
tinker
treepuzzle
trimmomatic
ugene
vcftools
velvet
wise
xmolwt