/graphics/linux_glide/

alt='cgit logo'/> index : freebsd-ports-gnome
FreeBSD GNOME current development ports (https://github.com/freebsd/freebsd-ports-gnome)
aboutsummaryrefslogtreecommitdiffstats
path: root/biology
Commit message (Expand)AuthorAgeFilesLines
* biology/seqtools: 4.42.1 -> 4.43.0pi2016-07-313-17/+227
* Update to upstream release 0.8.16riggs2016-07-252-4/+4
* Cleanup $() variables in ports Makefiles.mat2016-07-201-1/+1
* - update libgd to 2.2.2dinoex2016-07-201-1/+1
* When there is a do-install target, do not use a post-install target, domat2016-07-193-4/+5
* Trim excess tabs, no-op changepawel2016-07-151-13/+13
* Update to version 0.8.14pawel2016-07-152-4/+4
* - Update to 0.8.11amdmi32016-07-072-5/+5
* Remove expired ports without open PRs:rene2016-07-057-161/+0
* - LICENSEamdmi32016-07-022-10/+22
* biology/diamond: update 0.8.6 -> 0.8.9junovitch2016-06-302-4/+4
* - Add missing dependency, fixing buildamdmi32016-06-241-1/+5
* - Switch to options helpersamdmi32016-06-212-7/+11
* biology/diamond: update to 0.8.6rm2016-06-182-4/+4
* - Fix run-time dependency issuesolivierd2016-06-111-2/+13
* biology/seaview: Update version 4.5.4.8=>4.6bofh2016-06-102-7/+4
* Update to 0.8.5matthew2016-06-093-34/+18
* - Update to 1.35wen2016-06-082-3/+4
* Remove unneeded usage of:mat2016-06-061-2/+1
* Deprecate ports broken for more than 6 monthsantoine2016-06-042-0/+4
* - Do install cmake and pkgconfig modulesamdmi32016-05-282-3/+8
* biology/{htslib|samtools|bcftools}: 1.3 -> 1.3.1pi2016-05-278-20/+23
* Remove useless WRKSRC definitions.mat2016-05-251-2/+0
* - Fix trailing whitespace in pkg-messagesamdmi32016-05-196-12/+12
* - Fix trailing whitespace in pkg-descrs, categories [a-f]*amdmi32016-05-1921-36/+36
* Fix DEPENDSantoine2016-05-191-2/+2
* - Convert to USES=mysqlamdmi32016-05-171-8/+4
* - Update to 4.9aamdmi32016-05-172-4/+7
* biology/bowtie2: 2.2.7 -> 2.2.8pi2016-05-142-3/+3
* Prevent collision with getline(3)bapt2016-05-141-0/+300
* Prevent collision with getline(3)bapt2016-05-141-0/+291
* Prevent collision with getline(3)bapt2016-05-124-6/+27
* biology/seqan: update 1.3.1 -> 2.1.1junovitch2016-05-1012-1915/+3706
* New port: biology/seqan-appsjunovitch2016-05-105-0/+220
* Add final slash in WWW entryolivierd2016-05-101-1/+1
* The BIOM file format (canonically pronounced biome) is designed to be aolivierd2016-05-104-0/+48
* During the exp-run in bug 208158, it was found that biology/ugene givesdim2016-05-084-0/+36
* DNA query sequences against a protein reference database (BLASTP and BLASTXwen2016-05-065-0/+71
* - Update to 1.14.8danilo2016-05-013-4/+4
* biology/seqtools: 4.41.1 -> 4.42.1pi2016-04-232-5/+5
* many ports: mark broken on powerpc64swills2016-04-221-0/+2
* - Switch to options helpersamdmi32016-04-173-16/+17
* - Update to 1.66wen2016-04-172-4/+3
* - Switch to options helpersamdmi32016-04-161-3/+8
* Upgrade from 5.12.0 to 5.13.0. Release-announcement available here:mi2016-04-163-4/+5
* Update to version 1.22.0, which now unfortunately requires Qt 5.x. Alsodanfe2016-04-149-36/+204
* - Add LICENSEamdmi32016-04-101-1/+8
* Remove ${PORTSDIR}/ from dependencies, Mk and categories a, b, and c.mat2016-04-0138-148/+148
* - Update to 1.5.0amdmi32016-04-013-23/+11
* - Use more appropriate BROKEN instead of IGNOREamdmi32016-03-301-4/+2
* - Update to 5.12.0wen2016-03-273-5/+7
* - Clarify LICENSEamdmi32016-03-241-4/+3
* Jellyfish is a tool for fast, memory-efficient counting of k-mers in DNA.amdmi32016-03-246-0/+146
* New port: biology/bowtie2.rakuco2016-03-236-0/+134
* New port: biology/slclust.rakuco2016-03-236-0/+85
* Trimmomatic performs a variety of useful trimming tasks for illuminawen2016-03-175-0/+41
* New port: biology/p5-transdecoderpi2016-03-175-0/+88
* biology/seqtools: 4.40.0 -> 4.41.1pi2016-03-153-4/+6
* Always set the DEFAULT github DISTFILE with .tar.gz for EXTRACT_SUFX.mat2016-03-081-2/+2
* New port: biology/bowtie.rakuco2016-03-056-0/+194
* New port: biology/vcftools.rakuco2016-02-275-0/+59
* - Update to 3.2.0wen2016-02-263-34/+62
* - Update to 1.14.7danilo2016-02-212-3/+3
* - Update to 1.34wen2016-02-122-3/+3
* biology/seqtools: 4.39.3 -> 4.40.0pi2016-02-062-3/+3
* biology/mapm3: document ncurses rqmt (USES+=ncurses), respect LDFLAGSmarino2016-02-021-0/+2
* biology/samtools: document ncurses requirement (USES+=ncurses)marino2016-02-021-1/+1
* biology/molden: updated distfile, take maintainerpi2016-01-212-4/+4
* Mark BROKEN: checksum and size mismatchantoine2016-01-211-0/+1
* The bedtools utilities are a suite of tools for performing a wide range ofwen2016-01-196-0/+135
* biology/molden: 5.0.7 -> 5.4pi2016-01-195-192/+799
* mark ports that don't work with Ruby 2.3swills2016-01-171-0/+1
* Convert LICENSE= "GPLxx # or later" to "GPLxx+"amdmi32016-01-134-4/+4
* Add Public Domain support to ports license framework. You can now useamdmi32016-01-121-3/+1
* Remove deprecated PLIST_DIRSTRY and also no longer needed PLIST_DIRSpawel2016-01-101-2/+0
* biology/crux is not jobs safemarino2015-12-311-0/+2
* biology/htslib: Replace FreeBSD-specific fix with a generic onemarino2015-12-291-5/+4
* Cleanup GH_* and variables order.mat2015-12-293-3/+1
* biology/consed: undeprecate, it presumably builds fine but it is restricted.rene2015-12-261-5/+1
* - Update to 7.266wen2015-12-255-42/+133
* biology/{bcftools,htslib,samtools}: update 1.2.x -> 1.3junovitch2015-12-2527-173/+930
* mark some of the ports that don't build on powerpc64 for meswills2015-12-144-0/+7
* - Update maintainer mail addressmiwi2015-12-1112-23/+22
* - Update to 1.32wen2015-12-113-6/+8
* biology/seqtools: 4.39.2 -> 4.39.3pi2015-12-052-3/+3
* biology/seqtools: 4.39.1 -> 4.39.2pi2015-12-022-3/+3
* - Mark BROKEN: checksum mismatch:amdmi32015-11-291-0/+2
* Remove expired ports:rene2015-11-2915-933/+0
* biology/platon: fix fetchingrm2015-11-203-6/+4
* - Switch to options helpersamdmi32015-11-191-1/+1
* biology/seqtools: Fix distinfo, WWWpi2015-11-182-3/+3
* biology/seqtools: 4.39.0 -> 4.39.1pi2015-11-14