/japanese/chasen/

Git repository'/>
aboutsummaryrefslogtreecommitdiffstats
path: root/biology/molden
Commit message (Collapse)AuthorAgeFilesLines
* Add USES=xorg USES=gl, ports categories bzeising2019-11-051-1/+1
| | | | | Add USES=xorg, USES=gl and in a few cases USES=gnome to ports in categories starting with 'b'.
* Bump PORTREVISION for ports depending on the canonical version of GCCgerald2019-07-271-1/+1
| | | | | | | | | | | | | | | as defined in Mk/bsd.default-versions.mk which has moved from GCC 8.3 to GCC 9.1 under most circumstances now after revision 507371. This includes ports - with USE_GCC=yes or USE_GCC=any, - with USES=fortran, - using Mk/bsd.octave.mk which in turn features USES=fortran, and - with USES=compiler specifying openmp, nestedfct, c11, c++0x, c++11-lang, c++11-lib, c++14-lang, c++17-lang, or gcc-c++11-lib plus, everything INDEX-11 shows with a dependency on lang/gcc9 now. PR: 238330
* Related to revision 499061 bump ports with USES=fortran to have themgerald2019-04-221-1/+1
| | | | | | | benefit from the improved situation where libgcc_s is only used when absolutely necessary. Suggested by: tijl
* Bump PORTREVISION for ports depending on the canonical version of GCCgerald2018-12-121-0/+1
| | | | | | | | | | | | | | | defined via Mk/bsd.default-versions.mk which has moved from GCC 7.4 t GCC 8.2 under most circumstances. This includes ports - with USE_GCC=yes or USE_GCC=any, - with USES=fortran, - using Mk/bsd.octave.mk which in turn features USES=fortran, and - with USES=compiler specifying openmp, nestedfct, c11, c++0x, c++11-lang, c++11-lib, c++14-lang, c++17-lang, or gcc-c++11-lib plus, as a double check, everything INDEX-11 showed depending on lang/gcc7. PR: 231590
* biology/molden: update to 5.8.2jmd2018-11-133-10/+45
| | | | | | | Also add do-install-{option}-on targets and shadow ${MKDIR} commands. PR: 233060 Submitted by: yuri
* biology/molden: Unbreak: fix the problem that it can't find libgcc_s.so from gccyuri2018-11-071-1/+2
| | | | | | | Add $(LDFLAGS) to makefile. While here, add USES=gl. Approved by: portmgr
* Bump PORTREVISION for ports depending on the canonical version of GCCgerald2018-07-301-1/+1
| | | | | | | | | | | | | | in the ports tree (via Mk/bsd.default-versions.mk and lang/gcc) which has now moved from GCC 6 to GCC 7 by default. This includes ports - featuring USE_GCC=yes or USE_GCC=any, - featuring USES=fortran, - using Mk/bsd.octave.mk which in turn features USES=fortran, and those - with USES=compiler specifying one of openmp, nestedfct, c11, c++0x, c++11-lib, c++11-lang, c++14-lang, c++17-lang, or gcc-c++11-lib. PR: 222542
* biology/molden: Unbreak by updating the MASTER_SITES URLyuri2018-07-201-2/+1
| | | | The upstream keeps changing the URL.
* Mark BROKEN: unfetchaableantoine2018-07-201-0/+1
| | | | Reported by: pkg-fallout
* biology/molden: Unbreak by updating the MASTER_SITES URLyuri2018-07-131-2/+1
|
* Mark BROKEN: unfetchableantoine2018-07-131-0/+1
| | | | | Reported by: pkg-fallout MFH: 2018Q3
* biolog/molden: unbreak after at least two intransparent distfile updatesjmd2018-05-212-6/+4
| | | | | | Reviewed by: zeising (mentor) Approved by: zeising (mentor) Differential Revision: https://reviews.freebsd.org/D15333
* Mark BROKEN: checksum and size mismatchantoine2018-05-071-0/+2
| | | | | Reported by: pkg-fallout MFH: 2018Q2
* Bump PORTREVISIONs of all users of math/mpc that we just updated togerald2018-03-111-1/+1
| | | | version 1.1.0 (via revision 464079).
* biology/molden: chase another intransparent upstream distfile upgrade.jmd2017-11-012-4/+4
| | | | | | Reviewed by: swills (mentor), mat Approved by: swills (mentor) Differential Revision: https://reviews.freebsd.org/D12829
* biology/molden: unbreak by chasing latest intransparent distfile update.jmd2017-09-282-4/+4
| | | | | | Reviewed by: swills (mentor) Approved by: swills (mentor) Differential Revision: https://reviews.freebsd.org/D12521
* Bump PORTREVISION for ports depending on the canonical version of GCCgerald2017-09-111-1/+1
| | | | | | | | | | | | | | (via Mk/bsd.default-versions.mk and lang/gcc) which has moved from GCC 5.4 to GCC 6.4 under most circumstances. This includes ports - with USE_GCC=yes or USE_GCC=any, - with USES=fortran, - using Mk/bsd.octave.mk which in turn features USES=fortran, and - with USES=compiler specifying openmp, nestedfct, c++11-lib, c++11-lang, c++14-lang, c++0x, c11, or gcc-c++11-lib. PR: 219275
* Chase next distfile update. Upstream contacted whether we would be allowed ↵jmd2017-07-142-4/+4
| | | | | | | | to host a distfile copy. Reviewed by: swills (mentor) Approved by: swills (mentor) Differential Revision: https://reviews.freebsd.org/D11586
* biology/molden: Unbreak by chasing their latest opaque update to the ↵jmd2017-07-122-7/+5
| | | | | | | | distribution. Reviewed by: swills (mentor) Approved by: swills (mentor) Differential Revision: https://reviews.freebsd.org/D11338
* Mark BROKEN.mat2017-06-221-0/+2
| | | | | | | | => Attempting to fetch ftp://ftp.cmbi.ru.nl/pub/molgraph/molden/molden5.7.tar.gz fetch: ftp://ftp.cmbi.ru.nl/pub/molgraph/molden/molden5.7.tar.gz: size mismatch: expected 5339411, actual 5339467 => Couldn't fetch it - please try to retrieve this Sponsored by: Absolight
* Previous commit unbroke the port.linimon2017-06-031-2/+0
| | | | Reported by: xmj
* biology/molden: Chase recent upstream change of molden distfile.jmd2017-05-242-4/+4
| | | | | | Reviewed by: swills (mentor) Approved by: swills (mentor) Differential Revision: https://reviews.freebsd.org/D10864
* Revision bump of all ports with USE_GL after consolidation of mesa-libsrezny2017-05-231-1/+1
| | | | | Approved by: swills (mentor) Differential Revision: https://reviews.freebsd.org/D10845
* Mark BROKEN: checksum and size mismatchantoine2017-05-201-0/+2
| | | | Reported by: pkg-fallout
* Bump PORTREVISIONs for ports depending on the canonical version of GCC andgerald2017-04-011-1/+1
| | | | | | | | | | | | | | lang/gcc which have moved from GCC 4.9.4 to GCC 5.4 (at least under some circumstances such as versions of FreeBSD or platforms). This includes ports - with USE_GCC=yes or USE_GCC=any, - with USES=fortran, - using using Mk/bsd.octave.mk which in turn has USES=fortran, and - with USES=compiler specifying openmp, nestedfct, c++11-lib, c++14-lang, c++11-lang, c++0x, c11, or gcc-c++11-lib. PR: 216707
* biology/molden: Unbreak port, regenerate checksums, increment PORTREVISION.jmd2017-02-112-7/+5
| | | | | | Reviewed by: swills (mentor), pi (former maintainer) Approved by: swills (mentor), pi (former maintainer) Differential Revision: https://reviews.freebsd.org/D9501
* - Mark BROKEN: does not fetch, size/checksum mismatchamdmi32017-02-071-0/+2
| | | | Approved by: portmgr blanket
* Bump PORTREVISIONS for ports depending on the canonical version of GCC andgerald2016-12-071-1/+1
| | | | | | | | | | | | | | | lang/gcc which have moved from GCC 4.8.5 to GCC 4.9.4 (at least under some circumstances such as versions of FreeBSD or platforms), part II. The first part covered ports with USE_GCC=yes, USE_GCC=any, or one of gcc-c++11-lib, openmp, nestedfct, c++11-lib as well as c++14-lang, c++11-lang, c++0x, c11 requested via USES=compiler. This adds ports with USES=fortran and ports using Mk/bsd.octave.mk which in turn has USES=fortran. PR: 214965 Reported by: thierry
* biology/molden: distfile was updated in xwin.cpi2016-12-042-4/+4
|
* biology/molden: add missing LICENSE_NAMEpi2016-11-101-1/+2
| | | | Reported by: pkg-fallout
* biology/molden: fix distinfo, set LICENSEpi2016-11-102-7/+11
| | | | | | Submitted by: marino Reported by: Eduardo Lemos de Sa <eduardo.lemosdesa@gmail.com> MFH: 2016Q4
* Mark BROKEN: unfetchable, size mismatchantoine2016-10-011-0/+1
| | | | Reported by: pkg-fallout
* biology/molden: 5.4 -> 5.7pi2016-08-262-6/+4
| | | | | | | | | | - Adds editable text fields that are longer than the visible string and introduces a new way of selecting a range of amino acids. - introduces interfaces to the open source packages openbabel and pharmer. Openbabel is used to create 2D images of the molecules in a .sdf file. It is also used to do 2D fingerprint searching. Pharmer is used to pharmacophore (3D) searching against indexed databases of .sdf files.
* - Mark BROKEN: does not fetch (distfile was removed from ftp)amdmi32016-08-221-0/+2
| | | | Approved by: portmgr blanket
* - Fix trailing whitespace in pkg-descrs, categories [a-f]*amdmi32016-05-191-1/+1
| | | | Approved by: portmgr blanket
* biology/molden: updated distfile, take maintainerpi2016-01-212-4/+4
| | | | | | - upstream distfile is moving target with same version number Submitted by: antoine
* Mark BROKEN: checksum and size mismatchantoine2016-01-211-0/+1
| | | | Reported by: pkg-fallout
* biology/molden: 5.0.7 -> 5.4pi2016-01-195-192/+799
| | | | | | | | | | | | | | Changes: - Missing hydrogens atoms of HETATM molecules (pdb files) are stored locally. - Pdb files can now be clipped. - Fixes missing residues. Introduces an alternative way of generating rotamers, without using z-matrices. This potentially a faster algorithm. - Supports Movie making through avconv/ffmpeg. - calculates the Electron Localization Function (ELF). - Updated code of ambfor/ambmd to speed up optimisations/MD of proteins solvated in water (Jan, 2014). PR: 204341
* Update the default version of GCC in the Ports Collection from GCC 4.7.4gerald2014-09-111-1/+1
| | | | | | | | | | to GCC 4.8.3. Part II, Bump PORTREVISIONs. PR: 192025 Tested by: antoine (-exp runs) Approved by: portmgr (implicit)
* Catch a couple of missing convertsion to :tu/:tlbapt2014-05-051-1/+1
| | | | | Submitted by: ak With hat: portmgr
* Update the default version of GCC used in the Ports Collection fromgerald2014-03-111-0/+1
| | | | | | | | | | | GCC 4.6.4 to GCC 4.7.3. This entails updating the lang/gcc port as well as changing the default in Mk/bsd.default-versions.mk. Part II, Bump PORTREVISIONs. PR: 182136 Supported by: Christoph Moench-Tegeder <cmt@burggraben.net> (fixing many ports) Tested by: bdrewery (two -exp runs)
* - Update to 5.0.7miwi2014-02-272-24/+21
| | | | | PR: 185942 Submitted by: ports fury
* - USES=fortran gmake.tijl2013-12-292-16/+15
| | | | | | | - Add dependency on xproto. - Fix build with new CFLAGS. - Staging. - New WWW.
* Update to libmpc version 1.0.1 which brings the following fixes:gerald2013-10-261-0/+1
| | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | - Switched to automake 1.11.6, see CVE-2012-3386. - #14669: Fixed extraction of CC from gmp.h. - Fixed case of intermediate zero real or imaginary part in mpc_fma, found by hydra with GMP_CHECK_RANDOMIZE=1346362345. This is on top of the following changes from version 1.0 - Licence change towards LGPLv3+ for the code and GFDLv1.3+ (with no invariant sections) for the documentation. - 100% of all lines are covered by tests - Renamed functions . mpc_mul_2exp to mpc_mul_2ui . mpc_div_2exp to mpc_div_2ui - 0^0, which returned (NaN,NaN) previously, now returns (1,+0). - Removed compatibility with K&R compilers, which was untestable due to lack of such compilers. - New functions . mpc_log10 . mpc_mul_2si, mpc_div_2si - Speed-ups . mpc_fma - Bug fixes . mpc_div and mpc_norm now return a value indicating the effective rounding direction, as the other functions. . mpc_mul, mpc_sqr and mpc_norm now return correct results even if there are over- or underflows during the computation. . mpc_asin, mpc_proj, mpc_sqr: Wrong result when input variable has infinite part and equals output variable is corrected. . mpc_fr_sub: Wrong return value for imaginary part is corrected. Convert to the new LIB_DEPENDS standard and remove hard-coded .so versions from a couple of dependent ports. Bump PORTREVISIONS of all dependent ports. PR: 183141 Approved by: portmgr (bdrewery)
* Add NO_STAGE all over the place in preparation for the staging support (cat: ↵bapt2013-09-201-0/+1
| | | | biology)
* - Update to 5.0.6miwi2013-04-262-3/+3
| | | | | PR: 178032 Submitted by: Ports Fury
* Update to 5.0.4eadler2012-12-152-3/+3
|
* - Update to version 5.0.2sperber2012-12-017-275/+79
| | | | | | | | | | - Add MAKE_JOBS_UNSAFE - Convert to optionsng PR: ports/171970 Submitted by: KATO Tsuguru <tkato432 _at_ yahoo.com> Approved by: beat (mentor) Feature safe: yes
* Mea culpa, s/Whom/Created by/danfe2012-09-231-1/+1
|
* - Adjust "Created by" tag to include more complete submitter's informationdanfe2012-09-231-5/+4
| | | | | - Mute MKDIRs, remove trailing dot from RESTRICTED, drop leading indefinite article from COMMENT where appropriate
* - Reassign to the heap at maintainer's requesttabthorpe2012-09-221-6/+2
|
* Switch from libglut to freeglut and retire libglut. Libglut hasn't beenkwm2012-08-05