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* Remove non staged ports without pending PR from b*bapt2014-09-0115-1973/+0
* - Update Unipro UGENE and documentation to version 1.14.0danfe2014-09-017-226/+71
* biology/crux: stage, modernize, add license (BSD[23]CLAUSE), cleanupsrene2014-08-274-46/+63
* - Stagifyamdmi32014-08-268-3/+124
* update ports:pi2014-08-2431-1187/+735
* Fix build. Hopefully it doesn't break the app.adamw2014-08-221-0/+11
* Fix build on -current by un-clobbering LDFLAGS. Also, don'tadamw2014-08-162-4/+13
* - Update to 5.10.2wen2014-08-104-270/+232
* Convert the Python framework bits to USES=python.mva2014-08-091-2/+2
* - Switch to USES=libtool, drop .la filesamdmi32014-08-072-4/+4
* USES=execinfobapt2014-08-052-6/+2
* biology/p5-bioperl-run: 1.6.1 -> 1.6.901, unbreak, stagifypi2014-08-045-217/+296
* biology/p5-bioperl: fix pkg-descr sidenote linkpi2014-08-041-1/+1
* Add a DOCS option.adamw2014-08-042-5/+7
* biology/seqtools: 4.27 -> 4.28pi2014-07-312-3/+3
* Convert a bunch of EXTRACT_SUFX=... into USES=tar:...adamw2014-07-308-16/+8
* Convert a bunch of USE_BZIP2 to USES=tar:bzip2adamw2014-07-302-4/+2
* Rename biology/ patch-xy patches to reflect the files they modify.adamw2014-07-2811-13/+13
* - Update to 1.6.924 [1]wen2014-07-273-10/+11
* Really fix.mat2014-07-261-2/+0
* Fix build.mat2014-07-251-1/+1
* biology/p5-Bio-Graphics: 2.37 -> 2.38pi2014-07-242-3/+3
* Reset maintainership for ports not staged with no pending PRbapt2014-07-246-6/+6
* - Switch to USES=libtool, drop .la filesamdmi32014-07-232-3/+4
* biology/mummer: Use OPSYS with OSVERSIONmarino2014-07-201-1/+1
* biology/garlic: Stage properly to unbreakmarino2014-07-171-7/+5
* Add OPTIONS_DEFINE=DOCS for ports with %%PORTDOCS%% in the plist.adamw2014-07-161-0/+2
* Add DOCS to OPTIONS_DEFINE to ports that check for PORT_OPTIONS:MDOCS.adamw2014-07-152-14/+21
* biology/platon: Unbreak by hosting known distfiles elsewheremarino2014-07-132-6/+9
* biology/seqtools: 4.26 -> 4.27pi2014-07-132-4/+3
* Use gcc on all platforms.adamw2014-07-111-6/+1
* Stagify.vanilla2014-07-071-6/+5
* Missed a NOPORTDOCS.adamw2014-07-051-3/+4
* Remove NOPORTDOCS and NOPORTEXAMPLES from unstaged ports. Stage a couple whileadamw2014-07-051-21/+19
* - Chase database/sqlite3 slib bumpmiwi2014-06-281-0/+1
* Fix compilation on 10+ (clang)miwi2014-06-272-2/+10
* - Mark BROKENwen2014-06-261-0/+2
* Put HOME in MAKE_ARGS to handle pverride of HOME in MAKE_ENV from bsd.port.mkantoine2014-06-251-1/+2
* Use MAKE_CMD instead of GMAKEbapt2014-06-251-2/+2
* Mark as broken: no distinfo providedbapt2014-06-231-2/+1
* Mark as broken: no distinfo providedbapt2014-06-231-3/+1
* Fix shebang line in Perl and Python scripts.rakuco2014-06-201-13/+6
* Mark BROKEN: Fails to configureantoine2014-06-201-0/+2
* biology/blast: Deprecate for removal after 4 September 2014marino2014-06-191-0/+3
* Update to 1.2.10.rakuco2014-06-183-35/+23
* Update to 3.8.31.rakuco2014-06-185-89/+37
* Reset the 99 ports still listed under sylvio@marino2014-06-121-1/+1
* Remove all the bootstrap files (.bs) from the plists.mat2014-06-102-3/+0
* Remove indefinite articles and trailing periods from COMMENT, plusolgeni2014-06-096-6/+6
* Remove all space characters from Makefile assignments.olgeni2014-06-091-1/+1
* Stagify, remove BROKEN.vanilla2014-06-072-112/+107
* - Update to 6.6.0miwi2014-06-055-834/+1183
* Unbreakantoine2014-06-051-1/+1
* - Update to 4.5.2miwi2014-06-042-5/+5
* Update to 0.5.1 snapshot 20100824bapt2014-06-034-8/+49
* - add stage supportohauer2014-06-011-5/+1
* - add stage supportohauer2014-06-011-12/+6
* - add stage supportohauer2014-06-011-22/+16
* - add stage supportohauer2014-06-011-6/+3
* - add stage supportohauer2014-06-011-16/+4
* - add stage supportohauer2014-06-011-21/+8
* - I forgot to svn add a new patchdanilo2014-06-011-0/+10
* - Update from 1.13.5 to 1.13.7danilo2014-06-013-9/+9
* Add DOCS and EXAMPLE options to biology/mafftmilki2014-05-311-0/+2
* - Update to 1.6.923wen2014-05-305-1532/+1440
* biology/embassy: specify post-extraction with ${TAR}marino2014-05-291-1/+1
* Convert to USES=dos2unixbapt2014-05-261-2/+2
* Multiple ports: reset maintainerseadler2014-05-262-2/+2
* - Update to 4.5.1miwi2014-05-213-8/+13
* - Update to 7.149amdmi32014-05-213-32/+35
* Quote ${CC} and similar variables in MAKE_ARGS.tijl2014-05-211-1/+1
* - update to 1.31jadawin2014-05-162-3/+3
* - Update to 5.10.0wen2014-05-133-6/+39
* - Update to 5.9.0 [1]wen2014-05-133-40/+263
* Replace maintainer's email address with one that seems to workantoine2014-05-11