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# Created by: FreeBSD Bio porters (bio@freebsd.net)
# $FreeBSD$

PORTNAME=   biojava
DISTVERSION=    1.7
PORTEPOCH=  1
CATEGORIES= biology java
MASTER_SITES=   http://www.biojava.org/download/bj17/all/
DISTNAME=   ${PORTNAME}-${DISTVERSION}-all
EXTRACT_SUFX=   .jar

MAINTAINER= ports@FreeBSD.org
COMMENT=    Open-source Java tools for processing biological data

BROKEN=     Does not build
DEPRECATED= Broken for more than 6 months
EXPIRATION_DATE=    2017-08-23

USE_JAVA=   yes
JAVA_VERSION=   1.6+
USE_ANT=    yes
MAKE_ENV=   CLASSPATH="${JAVALIBDIR}"
ALL_TARGET= package-biojava

JARFILES=   biojava.jar bytecode.jar
PORTDOCS=   biojava
PORTEXAMPLES=   demos
WRKSRC=     ${WRKDIR}/${PORTNAME}-${PORTVERSION}

OPTIONS_DEFINE= DOCS EXAMPLES

.include <bsd.port.options.mk>

.if !defined(WITHOUT_TESTS)
regression-test:
    @(cd ${BUILD_WRKSRC}; \
        ${SETENV} ${MAKE_ENV} ${ANT} ${MAKE_ARGS} runtests)
.endif

do-install:
    @${ECHO_MSG} -n ">> Installing JAR files in ${JAVAJARDIR}..."
    @${MKDIR} ${STAGEDIR}${JAVAJARDIR}
    @${INSTALL_DATA} ${JARFILES:S|^|${WRKSRC}/ant-build/|} ${STAGEDIR}${JAVAJARDIR}
    @${ECHO_MSG} " [ DONE ]"

    @${ECHO_MSG} -n ">> Installing documentation in ${DOCSDIR}..."
    @${MKDIR} ${STAGEDIR}${DOCSDIR}
    @${INSTALL_DATA} ${WRKSRC}/LICENSE ${STAGEDIR}${DOCSDIR}
    @${INSTALL_DATA} ${WRKSRC}/README ${STAGEDIR}${DOCSDIR}
    @(cd ${WRKSRC}/doc && ${COPYTREE_SHARE} biojava ${STAGEDIR}${DOCSDIR})
    @${ECHO_MSG} " [ DONE ]"

    @${ECHO_MSG} -n ">> Installing examples in ${EXAMPLESDIR}..."
    @${MKDIR} ${STAGEDIR}${EXAMPLESDIR}
    @(cd ${WRKSRC}/doc && ${COPYTREE_SHARE} demos ${STAGEDIR}${EXAMPLESDIR})
    @${ECHO_MSG} " [ DONE ]"

.if !defined(BATCH)
    @${ECHO_MSG} ""
    @${ECHO_MSG} "Libraries installed at: ${JAVAJARDIR}"
    @${ECHO_MSG} "You should edit your CLASSPATH to include the jar files"
    @${ECHO_MSG} "in this directory."
    @${ECHO_MSG} ""
    @${ECHO_MSG} "Docs and demos are installed in:"
    @${ECHO_MSG} "${DOCSDIR}"
    @${ECHO_MSG} ""
.endif

.include <bsd.port.mk>