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# New ports collection makefile for: biojava
# Date created: 15 September 2000
# Whom: FreeBSD Bio porters (bio@freebsd.net)
#
# $FreeBSD$
#
PORTNAME= biojava
PORTVERSION= 1.30
CATEGORIES= biology java
MASTER_SITES= http://www.biojava.org/download/source/
MAINTAINER= whitekid@gmail.com
COMMENT= Open-source java tools for processing biological data
RUN_DEPENDS= ${JAVAJARDIR:S,^${PREFIX},${LOCALBASE},}/xml-apis.jar:${PORTSDIR}/textproc/xerces-j \
${JAVAJARDIR:S,^${PREFIX},${LOCALBASE},}/jakarta-regexp.jar:${PORTSDIR}/java/jakarta-regexp
BROKEN= Does not compile
USE_JAVA= yes
JAVA_VERSION= 1.3+
USE_ANT= yes
JARFILES= biojava.jar bytecode.jar
PORTDOCS= api
SAMPLES= demos demos-1.4 demos-obsolete
post-build:
.if !defined(NOPORTDOCS)
@${ECHO_MSG} -n ">> Build javadocs..."
@cd ${WRKSRC} && ant javadocs
.endif
# from textproc/xerces-j
do-install:
@${ECHO_MSG} -n ">> Installing JAR files in ${JAVAJARDIR}..."
@${MKDIR} ${JAVAJARDIR}
.for JARFILE in ${JARFILES}
@cd ${WRKSRC}/ant-build && ${INSTALL_DATA} ${JARFILE} ${JAVAJARDIR}/${JARFILE}
@${ECHO_MSG} -n " ${JARFILE}"
.endfor
@${ECHO_MSG} " [ DONE ]"
.if !defined(NOPORTDOCS)
@${ECHO_MSG} -n ">> Installing documentation in ${DOCSDIR}..."
@${MKDIR} ${DOCSDIR}
@${INSTALL_DATA} ${WRKSRC}/LICENSE ${DOCSDIR}
@${INSTALL_DATA} ${WRKSRC}/README ${DOCSDIR}
@cd ${WRKSRC}/ant-build/docs && \
${FIND} ${PORTDOCS} -type d -exec ${MKDIR} "${DOCSDIR}/{}" \; && \
${FIND} ${PORTDOCS} -not -type d -exec ${INSTALL_DATA} "{}" "${DOCSDIR}/{}" \;
@${ECHO_MSG} " [ DONE ]"
.endif
.if !defined(WITHOUT_SAMPLES)
@${ECHO_MSG} -n ">> Installing demos in ${EXAMPLESDIR}..."
cd ${WRKSRC} && \
${FIND} ${SAMPLES} -type d -exec ${MKDIR} "${EXAMPLESDIR}/{}" \; && \
${FIND} ${SAMPLES} -not -type d -exec ${INSTALL_DATA} "{}" "${EXAMPLESDIR}/{}" \;
@${ECHO_MSG} " [ DONE ]"
.endif
post-install:
.if !defined(BATCH)
@${ECHO_MSG} ""
@${ECHO_MSG} "Libraries installed at: ${JAVAJARDIR}"
@${ECHO_MSG} "You should edit your CLASSPATH to include the jar files"
@${ECHO_MSG} "in this directory."
@${ECHO_MSG} ""
@${ECHO_MSG} "Docs and demos are installed in:"
@${ECHO_MSG} "${DOCSDIR}"
@${ECHO_MSG} ""
.endif
.include <bsd.port.mk>
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