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# Created by: Jason Bacon <bacon4000@gmail.com>
# $FreeBSD$
PORTNAME= cd-hit
PORTVERSION= 4.6.4
PORTREVISION= 1
DISTVERSIONPREFIX= V
CATEGORIES= biology
MAINTAINER= bacon4000@gmail.com
COMMENT= Clustering and comparing protein or nucleotide sequences
LICENSE= GPLv2
USE_GITHUB= yes
GH_ACCOUNT= weizhongli
GH_PROJECT= cdhit
USES= compiler:openmp gmake shebangfix
WRKSRC= ${WRKDIR}/cdhit-${PORTVERSION}
SHEBANG_FILES= ${WRKSRC}/*.pl
MAKE_FLAGS= openmp=yes
post-patch:
@${REINPLACE_CMD} \
-e 's|g++|${CXX}|g' \
-e 's|\$$(PREFIX)|$${DESTDIR}$${PREFIX}/bin|g' \
${WRKSRC}/${MAKEFILE}
@${REINPLACE_CMD} \
-e 's|/bin/bash|${LOCALBASE}/bin/bash|g' \
${WRKSRC}/*.pl
post-stage:
@cd ${STAGEDIR}${PREFIX}/bin && \
${STRIP_CMD} cd-hit cd-hit-2d cd-hit-454 \
cd-hit-div cd-hit-est cd-hit-est-2d
.include <bsd.port.mk>
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