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path: root/biology/clustalw/files/patch-ag
blob: 9cde8d9d019dc36721d93d9998abbc63fa414a6a (plain) (blame)
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--- interface.c-orig    Thu Mar 21 10:19:26 2002
+++ interface.c Thu Mar 21 10:22:18 2002
@@ -1170,7 +1170,7 @@
                if(strstr(temp, help_marker)){
                    if(usemenu) {
                        fprintf(stdout,"\n");
-                           getstr("Press [RETURN] to continue",lin2);
+                           getstr("Press [RETURN] to continue",lin2,MAXLINE);
                    }
                    fclose(help_file);
                    return;
@@ -1182,7 +1182,7 @@
                   if(usemenu) {
                      if(nlines >= PAGE_LEN) {
                           fprintf(stdout,"\n");
-                      getstr("Press [RETURN] to continue or  X  to stop",lin2);
+                      getstr("Press [RETURN] to continue or  X  to stop",lin2,MAXLINE);
                       if(toupper(*lin2) == 'X') {
                           fclose(help_file);
                           return;
@@ -1194,7 +1194,7 @@
            }
            if(usemenu) {
                fprintf(stdout,"\n");
-               getstr("Press [RETURN] to continue",lin2);
+               getstr("Press [RETURN] to continue",lin2,MAXLINE);
            }
            fclose(help_file);
        }
@@ -1232,7 +1232,7 @@
                 ++nlines;
                 if(nlines >= PAGE_LEN) {
                         fprintf(stdout,"\n");
-                        getstr("Press [RETURN] to continue or  X  to stop",lin2);
+                        getstr("Press [RETURN] to continue or  X  to stop",lin2,MAXLINE);
                         if(toupper(*lin2) == 'X') {
                                 fclose(file);
                                 return;
@@ -1243,7 +1243,7 @@
         }
         fclose(file);
         fprintf(stdout,"\n");
-        getstr("Press [RETURN] to continue",lin2);
+        getstr("Press [RETURN] to continue",lin2,MAXLINE);
 }
 
 
@@ -1692,7 +1692,7 @@
         FILE *infile;
 
         if(usemenu)
-                getstr("Enter name of the matrix file",lin2);
+                getstr("Enter name of the matrix file",lin2,MAXLINE);
         else
                 strcpy(lin2,str);
 
@@ -1718,7 +1718,7 @@
         FILE *infile;
 
         if(usemenu)
-                getstr("Enter name of the matrix file",lin2);
+                getstr("Enter name of the matrix file",lin2,MAXLINE);
         else
                 strcpy(lin2,str);
 
@@ -2121,7 +2121,7 @@
            strcpy(local_prompt,"\n\nEnter new name to avoid overwriting ");
            strcat(local_prompt," [%s]: ");          
            fprintf(stdout,local_prompt,file_name);
-           gets(temp);
+           fgets(temp,FILENAMELEN+1,stdin);
            if(*temp != EOS) strcpy(file_name,temp);
        }
    }
@@ -2129,7 +2129,7 @@
        strcpy(local_prompt,prompt);
        strcat(local_prompt," [%s]: ");          
        fprintf(stdout,local_prompt,file_name);
-       gets(temp);
+       fgets(temp,FILENAMELEN+1,stdin);
        if(*temp != EOS) strcpy(file_name,temp);
    }
 
@@ -2335,7 +2335,7 @@
        if (usemenu)
                fprintf(stdout,"\nUse the existing GUIDE TREE file,  %s  (y/n) ? [y]: ",
                                            tree_name);
-                gets(temp);
+                fgets(temp,MAXLINE,stdin);
                 if(*temp != 'n' && *temp != 'N') {
                     strcpy(phylip_name,tree_name);
                     use_tree = TRUE;
@@ -2567,7 +2567,7 @@
 
             fprintf(stdout,"\nEnter a name for the guide tree file [%s]: ",
                                            phylip_name);
-                   gets(temp);
+                   fgets(temp,MAXLINE,stdin);
                    if(*temp != EOS)
                            strcpy(phylip_name,temp);
            }
@@ -2676,7 +2676,7 @@
 #endif
                fprintf(stdout,"\nUse the existing GUIDE TREE file for Profile 1,  %s  (y/n) ? [y]: ",
                                            tree_name);
-                gets(temp);
+                fgets(temp,MAXLINE,stdin);
                 if(*temp != 'n' && *temp != 'N') {
                     strcpy(p1_tree_name,tree_name);
                     use_tree1 = TRUE;
@@ -2702,7 +2702,7 @@
 #endif
                fprintf(stdout,"\nUse the existing GUIDE TREE file for Profile 2,  %s  (y/n) ? [y]: ",
                                            tree_name);
-                gets(temp);
+                fgets(temp,MAXLINE,stdin);
                 if(*temp != 'n' && *temp != 'N') {
                     strcpy(p2_tree_name,tree_name);
                     use_tree2 = TRUE;
@@ -3730,7 +3730,7 @@
    if(usemenu) {
            fprintf(stdout,"\nEnter a name for the parameter output file [%s]: ",
                                            parname);
-                   gets(temp);
+                   fgets(temp,FILENAMELEN+1,stdin);
                    if(*temp != EOS)
                            strcpy(parname,temp);
            }