aboutsummaryrefslogtreecommitdiffstats
path: root/biology/crux/Makefile
blob: b303a7f992bb9535e100ee015739bad57d52cf26 (plain) (blame)
1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
21
22
23
24
25
26
27
28
29
30
31
32
33
34
35
36
37
38
39
40
41
42
43
44
45
46
# Created by: Jason Evans <jasone@FreeBSD.org>
# $FreeBSD$

PORTNAME=   crux
PORTVERSION=    1.2.0
PORTREVISION=   2
CATEGORIES= biology python
MASTER_SITES=   http://www.canonware.com/download/Crux/

MAINTAINER= jasone@FreeBSD.org
COMMENT=    Software toolkit for phylogenetic inference

USE_BZIP2=  yes
GNU_CONFIGURE=  yes
CONFIGURE_ARGS= --with-python=${PYTHON_CMD} --disable-mpi
USE_CSTD=   gnu99
USE_GMAKE=  yes
USE_PYTHON= yes

OPTIONS_DEFINE= SYS_LINALG
SYS_LINALG_DESC=    Enable system ATLAS/LAPACK

NO_STAGE=   yes
.include <bsd.port.pre.mk>

CPPFLAGS+=  -I${LOCALBASE}/include
LDFLAGS+=   -L${LOCALBASE}/lib
USE_FORTRAN=    yes

.include <bsd.port.options.mk>

.if ${PORT_OPTIONS:MSYS_LINALG}
CONFIGURE_ARGS+=    --enable-sys-linalg
LIB_DEPENDS+=   libatlas.so:${PORTSDIR}/math/atlas
.else
CONFIGURE_ARGS+=    --disable-sys-linalg
.endif

.if ${ARCH} == "powerpc" && ${OSVERSION} > 900000
BROKEN=     Does not build on powerpc-9: error in pthreads
.endif

post-install:
    @${PREFIX}/bin/crux -b -q /dev/null

.include <bsd.port.post.mk>