aboutsummaryrefslogtreecommitdiffstats
path: root/biology/fasttree/Makefile
blob: 1dcc0db615bac311c9eb05eea726f8904beed17b (plain) (blame)
1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
21
22
23
24
25
26
27
28
29
30
31
32
33
34
# Created by: Jason Bacon <bacon4000@gmail.com>
# $FreeBSD$

PORTNAME=   FastTree
PORTVERSION=    2.1.8
PORTREVISION=   2
CATEGORIES= biology
MASTER_SITES=   http://www.microbesonline.org/fasttree/
EXTRACT_SUFX=   .c

MAINTAINER= bacon4000@gmail.com
COMMENT=    Approximately-maximum-likelihood phylogenetic trees from alignments

# LICENSE=  unspecified open source

USES=       compiler:openmp

CFLAGS+=    -DOPENMP -fopenmp -O3 -finline-functions -funroll-loops
LDFLAGS+=   -lm

PLIST_FILES=    bin/FastTree

do-extract:
    ${MKDIR} ${WRKSRC}
    ${CP} ${DISTDIR}/${DISTFILES} ${WRKSRC}

do-build:
    cd ${WRKSRC} && ${CC} ${CFLAGS} -o FastTree ${DISTFILES} ${LDFLAGS}

do-install:
    ${MKDIR} ${STAGEDIR}${PREFIX}/bin
    ${INSTALL_PROGRAM} ${WRKSRC}/FastTree ${STAGEDIR}${PREFIX}/bin

.include <bsd.port.mk>