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# Created by: barnhart@genetics.wustl.edu
# $FreeBSD$
PORTNAME= hmmer
PORTVERSION= 3.1b2
CATEGORIES= biology
MASTER_SITES= http://eddylab.org/software/hmmer3/${PORTVERSION}/
MAINTAINER= mzaki@niid.go.jp
COMMENT= Profile hidden Markov models for biological sequence analysis
LICENSE= GPLv3
LICENSE_FILE= ${WRKSRC}/LICENSE
USES= gmake
GNU_CONFIGURE= yes
MAKE_ARGS= V=1
OPTIONS_DEFINE= DOCS EXAMPLES TEST
TEST_TEST_TARGET= check
TEST_USES= shebangfix perl5
TEST_VARS= shebang_glob=*.pl shebang_files=easel/devkit/* use_perl5=build
DOCFILES= COPYRIGHT Userguide.pdf
EXAMPLES= 7LESS_DROME HBB_HUMAN MADE1.hmm MADE1.out MADE1.sto \
Pkinase.hmm Pkinase.sto dna_target.fa fn3.hmm fn3.out fn3.sto \
globins4.hmm globins4.out globins4.sto globins45.fa \
minifam minifam.h3f minifam.h3i minifam.h3m minifam.h3p
post-build-TEST-on: do-test
post-install:
@${STRIP_CMD} ${STAGEDIR}${PREFIX}/bin/*
post-install-DOCS-on:
@${MKDIR} ${STAGEDIR}${DOCSDIR}
${INSTALL_DATA} ${DOCFILES:S,^,${WRKSRC}/,} ${STAGEDIR}${DOCSDIR}
post-install-EXAMPLES-on:
@${MKDIR} ${STAGEDIR}${EXAMPLESDIR}
${INSTALL_DATA} ${EXAMPLES:S,^,${WRKSRC}/tutorial/,} ${STAGEDIR}${EXAMPLESDIR}
.include <bsd.port.pre.mk>
.if ${MACHINE_CPU:Msse2}
PLIST_SUB+= SSE2=""
.else
PLIST_SUB+= SSE2="@comment "
.endif
.include <bsd.port.post.mk>
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