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# New ports collection Makefile for: hmmer
# Date created: June 29 1998
# Whom: barnhart@genetics.wustl.edu
#
# $FreeBSD$
#
PORTNAME= hmmer
PORTVERSION= 2.3.2
CATEGORIES= biology
MASTER_SITES= ftp://selab.janelia.org/pub/software/hmmer/CURRENT/
MAINTAINER= fernan@iib.unsam.edu.ar
COMMENT= Profile hidden Markov models for biological sequence analysis
GNU_CONFIGURE= yes
USE_PERL5= yes
CONFIGURE_ARGS+=--enable-threads --enable-lfs
DOCFILES= 00README COPYRIGHT INSTALL LICENSE NOTES Userguide.pdf
EXAMPLES= 7LES_DROME amino.null globins50.msf nucleic.pri rrm.sto \
Artemia.fa amino.pri globins630.fa pkinase.sto RU1A_HUMAN \
fn3.sto nucleic.null rrm.hmm
MAN1= hmmalign.1 hmmbuild.1 hmmcalibrate.1 hmmconvert.1 hmmemit.1 \
hmmer.1 hmmfetch.1 hmmindex.1 hmmpfam.1 hmmsearch.1
.if defined(WITH_PVM)
CONFIGURE_ENV+= PVM_ROOT="${LOCALBASE}/lib/pvm" PVM_ARCH="FREEBSD"
CONFIGURE_ARGS+= --with-pvm
BUILD_DEPENDS+= pvm:${PORTSDIR}/net/pvm
.endif
post-install:
.if !defined(NOPORTDOCS)
@ ${MKDIR} ${DOCSDIR}
.for docfile in ${DOCFILES}
@ ${INSTALL_DATA} ${WRKSRC}/${docfile} ${DOCSDIR}
.endfor
.endif
@ ${MKDIR} ${EXAMPLESDIR}
.for example in ${EXAMPLES}
@ ${INSTALL_DATA} ${WRKSRC}/tutorial/${example} ${EXAMPLESDIR}
.endfor
.if !defined(BATCH)
@ ${CAT} ${PKGMESSAGE}
.endif
.include <bsd.port.mk>
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