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# Created by: barnhart@genetics.wustl.edu
# $FreeBSD$
PORTNAME= hmmer
PORTVERSION= 3.0
CATEGORIES= biology
MASTER_SITES= ftp://selab.janelia.org/pub/software/hmmer3/3.0/ \
http://selab.janelia.org/software/hmmer3/3.0/
MAINTAINER= ports@FreeBSD.org
COMMENT= Profile hidden Markov models for biological sequence analysis
GNU_CONFIGURE= yes
USES= perl5
CONFIGURE_ARGS+=--enable-threads --enable-lfs
DOCFILES= COPYRIGHT INSTALL LICENSE Userguide.pdf
EXAMPLES= 7LESS_DROME Pkinase.sto fn3.sto globins4.sto minifam.h3f minifam.h3p \
HBB_HUMAN fn3.hmm globins4.hmm globins45.fa minifam.h3i \
Pkinase.hmm fn3.out globins4.out minifam minifam.h3m
OPTIONS_DEFINE= PVM DOCS EXAMPLES
PVM_DESC= PVM support
PVM_CONFIGURE_ENV= PVM_ROOT="${LOCALBASE}/lib/pvm" PVM_ARCH="FREEBSD"
PVM_CONFIGURE_WITH= pvm
PVM_BUILD_DEPENDS= pvm:${PORTSDIR}/net/pvm
post-install:
(cd ${WRKSRC}/documentation/man; for i in *.man; do \
${INSTALL_MAN} $$i ${STAGEDIR}${PREFIX}/man/man1/`echo $$i|${SED} 's/.man/.1/'`; \
done)
@${MKDIR} ${STAGEDIR}${DOCSDIR}
${INSTALL_DATA} ${DOCFILES:S,^,${WRKSRC}/,} ${STAGEDIR}${DOCSDIR}
@${MKDIR} ${STAGEDIR}${EXAMPLESDIR}
${INSTALL_DATA} ${EXAMPLES:S,^,${WRKSRC}/tutorial/,} ${STAGEDIR}${EXAMPLESDIR}
.include <bsd.port.mk>
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