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# New ports collection makefile for: lagan
# Date created: 07 Dec 2005
# Whom: Fernan Aguero <fernan@iib.unsam.edu.ar>
#
# $FreeBSD$
#
PORTNAME= lagan
PORTVERSION= 1.2
CATEGORIES= biology
MASTER_SITES= http://lagan.stanford.edu/lagan_web/
DISTNAME= ${PORTNAME}${PORTVERSION:S/.//}
MAINTAINER= fernan@iib.unsam.edu.ar
COMMENT= Efficient tools for large-scale multiple alignments of genomic DNA
LAGAN_DIR= ${PREFIX}/${PORTNAME}
USE_PERL5_RUN= yes
SUB_FILES= pkg-message
SUB_LIST= LAGAN_DIR=${LAGAN_DIR}
EXECUTABLES= anchors chaos glocal mlagan order
SCRIPTS= anal_gloc.pl lagan.pl rechaos.pl slagan.pl
EXEUTILS= Glue bin2bl bin2mf cextract contigorder cstat dotplot fa2xfa \
getbounds getcontigpos getlength getoverlap rc scorealign \
scorecontigs seqmerge
SCRIPTUTILS= cmerge2.pl draft.pl mextract.pl mf2bin.pl mpretty.pl \
mproject.pl mrun.pl mrunfile.pl mrunpairs.pl mviz.pl
CC:= ${CC} ${CFLAGS}
MAKE_ENV+= CPP="${CXX} ${CXXFLAGS}"
post-patch:
@${REINPLACE_CMD} -E 's,^(CC|CPP) =,\1 ?=,g' \
${WRKSRC}/Makefile
do-install:
@${MKDIR} ${LAGAN_DIR}
${CP} -R ${WRKSRC}/Readmes ${LAGAN_DIR}
.for exe in ${EXECUTABLES}
${INSTALL_PROGRAM} ${WRKSRC}/${exe} ${LAGAN_DIR}
.endfor
.for script in ${SCRIPTS}
${INSTALL_SCRIPT} ${WRKSRC}/${script} ${LAGAN_DIR}
.endfor
@${MKDIR} ${LAGAN_DIR}/utils
.for exeutil in ${EXEUTILS}
${INSTALL_PROGRAM} ${WRKSRC}/utils/${exeutil} ${LAGAN_DIR}/utils
.endfor
.for scriptutil in ${SCRIPTUTILS}
${INSTALL_SCRIPT} ${WRKSRC}/utils/${scriptutil} ${LAGAN_DIR}/utils
.endfor
@${CAT} ${PKGMESSAGE}
.include <bsd.port.mk>
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