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# Created by: Tony Maher
# $FreeBSD$
PORTNAME= mummer
PORTVERSION= 3.23
PORTREVISION= 1
CATEGORIES= biology
MASTER_SITES= SF
DISTNAME= MUMmer${PORTVERSION}
MAINTAINER= ports@FreeBSD.org
COMMENT= Modular system for rapid whole genome alignment
USES= gmake perl5
PROGRAMS= annotate combineMUMs delta-filter gaps \
mgaps mummer repeat-match show-aligns \
show-coords show-diff show-snps show-tiling
SCRIPTS= dnadiff exact-tandems mapview mummerplot nucmer \
nucmer2xfig promer run-mummer1 run-mummer3
DOCUMENTS= COPYRIGHT INSTALL LICENSE README
OPTIONS_DEFINE= DOCS
.include <bsd.port.options.mk>
post-extract:
@${REINPLACE_CMD} -e 's,type perl,type ${LOCALBASE}/bin/perl,' ${WRKSRC}/scripts/Makefile
.if ${OPSYS} == FreeBSD && ${OSVERSION} >= 1000024
@${REINPLACE_CMD} -e 's,type gcc,type clang,' ${WRKSRC}/Makefile
@${REINPLACE_CMD} -e 's,type g++,type clang++,' ${WRKSRC}/Makefile
.endif
do-install:
${INSTALL_PROGRAM} ${PROGRAMS:S|^|${WRKSRC}/|} ${STAGEDIR}${PREFIX}/bin
${INSTALL_SCRIPT} ${SCRIPTS:S|^|${WRKSRC}/|} ${STAGEDIR}${PREFIX}/bin
@${MKDIR} ${STAGEDIR}${DOCSDIR}
${INSTALL_DATA} ${DOCUMENTS:S|^|${WRKSRC}/|} ${STAGEDIR}${DOCSDIR}
.include <bsd.port.mk>
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