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# $FreeBSD$
PORTNAME= pbbam
DISTVERSION= g20180416
PORTREVISION= 1
CATEGORIES= biology
MAINTAINER= jwb@FreeBSD.org
COMMENT= PacBio BAM C++ library, with SWIG bindings
LICENSE= BSD3CLAUSE
LICENSE_FILE= ${WRKSRC}/LICENSE.txt
BUILD_DEPENDS= boost-libs>=1.60.0:devel/boost-libs
LIB_DEPENDS= libhts.so:biology/htslib \
libboost_regex.so:devel/boost-libs
USES= cmake compiler:c++14-lang pkgconfig
USE_GITHUB= yes
GH_ACCOUNT= PacificBiosciences
GH_TAGNAME= c6b8113adb5104948879e9ff69f739121f12a09f
# Disable tests for now. Bound to bundled googletest.
CMAKE_ARGS+= -DHTSLIB_INCLUDE_DIRS:STRING=${LOCALBASE}/include/htslib \
-DHTSLIB_LIBRARIES:STRING="-L${LOCALBASE}/lib -lhts" \
-DPacBioBAM_build_tests:BOOL=OFF \
-DPacBioBAM_build_docs:BOOL=OFF
do-install:
${INSTALL_PROGRAM} ${BUILD_WRKSRC}/bin/* ${STAGEDIR}${PREFIX}/bin
${INSTALL_DATA} ${BUILD_WRKSRC}/lib/* ${STAGEDIR}${PREFIX}/lib
cd ${WRKSRC}/include && ${COPYTREE_SHARE} . ${STAGEDIR}${PREFIX}/include
${MV} ${STAGEDIR}${PREFIX}/include/meson.build \
${STAGEDIR}${PREFIX}/include/pbbam
.include <bsd.port.mk>
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