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# Created by: Reed A. Cartwright <cartwright@asu.edu>
# $FreeBSD$
PORTNAME= samtools
PORTVERSION= 1.1
CATEGORIES= biology
MAINTAINER= cartwright@asu.edu
COMMENT= Tools for manipulating next-generation sequencing data
LICENSE= MIT
LICENSE_FILE= ${WRKSRC}/LICENSE
LIB_DEPENDS= libhts.so:${PORTSDIR}/biology/htslib
USE_GITHUB= yes
GH_ACCOUNT= samtools
GH_COMMIT= 34c6691
USES= gmake
SUB_FILES= pkg-message
CPPFLAGS+= -I${LOCALBASE}/include
LDFLAGS+= -L${LOCALBASE}/lib
MAKE_ENV= INSTALL_LIB="${INSTALL_LIB}" \
INSTALL_DATA="${INSTALL_DATA}" \
INSTALL_PROGRAM="${INSTALL_PROGRAM}" \
INSTALL_SCRIPT="${INSTALL_SCRIPT}" \
INSTALL_DIR="${MKDIR}"
PLIST_SUB= PORTVERSION="${PORTVERSION}"
.include <bsd.port.mk>
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