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# Created by: Hannes Hauswedell <h2+fbsdports@fsfe.org>
# $FreeBSD$
PORTNAME= seqan-apps
PORTVERSION= 2.2.0
DISTVERSIONPREFIX= seqan-v
CATEGORIES= biology
MAINTAINER= h2+fbsdports@fsfe.org
COMMENT= Official Bioinformatic applications based on the SeqAn library
LICENSE= BSD3CLAUSE LGPL3 GPLv3
LICENSE_COMB= multi
BUILD_DEPENDS= boost-libs>0:devel/boost-libs
USE_GITHUB= yes
GH_ACCOUNT= seqan
GH_PROJECT= seqan
# once #199603 is resolved, do the following instead of USE_GCC
# USES= cmake:outsource compiler:openmp,c++14-lang
USES= cmake:outsource
CMAKE_ARGS= -DSEQAN_BUILD_SYSTEM="SEQAN_RELEASE_APPS"
USE_GCC= 4.9+
.include <bsd.port.pre.mk>
.if ${OSVERSION} < 1000000
post-patch:
# missing C99 functions in FreeBSD's math.h, use C++ instead
@${REINPLACE_CMD} -e 's|expl(|std::exp(|g' ${WRKSRC}/apps/snp_store/snp_store.h
@${REINPLACE_CMD} -e 's|logl(|std::log(|g' ${WRKSRC}/apps/snp_store/snp_store.h
# the other way around (use math.h instead of cmath)
@${REINPLACE_CMD} -e 's|std::round|round|g' ${WRKSRC}/apps/yara/mapper_writer.h
@${REINPLACE_CMD} -e 's|std::erfc|erfc|g' ${WRKSRC}/apps/yara/bits_matches.h
.endif
.if ${ARCH} == "i386"
PLIST_SUB+= RM_I386="@comment "
.else
PLIST_SUB+= RM_I386=""
.endif
.include <bsd.port.post.mk>
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