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# Created by: chuynh@biolateral.com.au
# $FreeBSD$
PORTNAME= tRNAscan-SE
PORTVERSION= 1.23
PORTREVISION= 1
CATEGORIES= biology
MASTER_SITES= ftp://selab.janelia.org/pub/software/tRNAscan-SE/
EXTRACT_SUFX= .tar.Z
MAINTAINER= ports@FreeBSD.org
COMMENT= Improved tool for transfer RNA detection
USE_PERL5= yes
MAKE_ARGS= BINDIR="${PREFIX}/bin" \
LIBDIR="${DATADIR}" \
CC="${CC}" \
CFLAGS="${CFLAGS}"
PLIST_FILES+= bin/covels-SE bin/coves-SE bin/eufindtRNA bin/tRNAscan-SE bin/trnascan-1.4
MAN1= tRNAscan-SE.1
PORTDATA= *
PORTDOCS= Manual.ps
OPTIONS_DEFINE= DOCS
post-patch:
@${REINPLACE_CMD} -e 's|tRNAscanSE setpaths|tRNAscanSE|g ; \
s|if tRNAscan-SE|if ./tRNAscan-SE|g' ${WRKSRC}/Makefile
do-install:
.for f in covels-SE coves-SE eufindtRNA trnascan-1.4
${INSTALL_PROGRAM} ${WRKSRC}/${f} ${PREFIX}/bin
.endfor
${INSTALL_SCRIPT} ${WRKSRC}/tRNAscan-SE ${PREFIX}/bin
${INSTALL_MAN} ${WRKSRC}/tRNAscan-SE.man ${MANPREFIX}/man/man1/tRNAscan-SE.1
@${MKDIR} ${DATADIR}
.for f in TPCsignal Dsignal *.cm gcode.*
${INSTALL_DATA} ${WRKSRC}/${f} ${DATADIR}
.endfor
.include <bsd.port.options.mk>
#
# have to install before testing as path to data files is hardcoded
#
post-install:
@ cd ${WRKSRC} && ${MAKE} testrun
.if ${PORT_OPTIONS:MDOCS}
@${MKDIR} ${DOCSDIR}
${INSTALL_DATA} ${WRKSRC}/Manual.ps ${DOCSDIR}
.endif
.include <bsd.port.mk>
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