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n>/+715 * Update to 0.3.9.knu2002-08-033-2/+3 * add libgenome 0.5.0ijliao2002-07-306-0/+381 * upgrade to 4.4ijliao2002-07-168-16/+97 * Use $PYNUMERIC in the dependencies.tg2002-07-151-2/+2 * - Add patch that will, for -CURRENT only, change: -pthread -> -lc_rwjv2002-07-112-0/+23 * Update to 0.3.8.knu2002-07-083-6/+29 * - Update to version 2.4.1wjv2002-07-054-111/+183 * Bump XForms lib. version.mikeh2002-07-041-1/+1 * Unbreak this port:glewis2002-06-162-586/+585 * Correct MASTER_SITES.petef2002-06-081-1/+1 * Note distribution term.sada2002-05-271-8/+6 * Back my last commit out.sada2002-05-232-2/+2 * distfile has silently changed,sada2002-05-182-1/+2 * BROKEN: Checksum is incorrectkris2002-05-181-0/+2 * BROKEN: incorrect checksumskris2002-05-171-0/+2 * Update to sim4-2002.03.03 to unbreak build.kris2002-05-052-3/+3 * upgrade to V110-1ijliao2002-04-212-4/+3 * add avida 1.6.0ijliao2002-04-2011-0/+146 * Update to 0.3.6.knu2002-04-112-4/+3 * Swiss-PdbViewer is an application that provides a user friendly interfacedinoex2002-04-038-0/+388 * Remove #include <malloc.h>kris2002-03-311-0/+4 * change master siteijliao2002-03-293-10/+32 * Respect CFLAGS/CC.petef2002-03-291-0/+21 * Add crimap 2.4, a tool for the creation of multilocus linkage maps.wjv2002-03-276-0/+59 * Add tRNAscan-SE 1.21, an improved tool for transfer RNA detection.wjv2002-03-277-0/+102 * - Add a new patchwjv2002-03-272-1/+11 * Add USE_SUBMAKE, where it might be necessary.sobomax2002-03-251-0/+1 * BROKEN: Does not buildkris2002-03-251-0/+2 * - Fix certain mistakes in FreeBSD patcheswjv2002-03-228-70/+320 * Update to 0.3.5.knu2002-03-133-3/+13 * Fix WWW.dannyboy2002-03-091-1/+1 * Update to 2001.12.20pat2002-02-226-18/+88 * Pass maintainership to submitter and add a backup master site.petef2002-02-201-2/+3 * - Install documentationpat2002-02-134-6/+19 * Use ${ECHO_CMD} instead of ${ECHO} where you mean the echo command;knu2002-01-291-4/+4 * Add t_coffee 1.37, a multiple DNA or protein sequence alignment package.wjv2002-01-259-0/+438 * - Update to version of 2001-12-30wjv2002-01-252-2/+2 * - Update to version 1.82wjv2002-01-254-13/+28 * - Update to version 0.7.2, somewhat overdue. :-)wjv2002-01-252-27/+53 * o update to 3.7.sf2002-01-242-34/+7 * o update to 0.7.sf2002-01-242-2/+2 * update to 1.3.3.sf2002-01-232-2/+2 * - Update to version 1.00a4wjv2002-01-223-10/+261 * Update to 0.99.7. Use new DATADIR macro. Install documentation,trevor2002-01-204-24/+55 * Upgrade tinker to the latest revisionijliao2002-01-195-64/+101 * - Update to version 2.2.0wjv2002-01-183-15/+335 * Update to 0.2.petef2001-12-294-19/+8 * Initial import of artemis 4.0kevlo2001-12-226-0/+1529 * Update to 0.3.3.knu2001-12-223-2/+3 * Add gff2ps 0.97b, converts gff-formated genomic data-sets topetef2001-12-196-0/+42 * Add dna-qc 1993.07.26, a quality control algorithm for DNApetef2001-12-197-0/+94 * Update to version 2001.10.12.steve2001-12-172-2/+2 * fix pkg-plistijliao2001-12-091-0/+1 * * Replace pkg-message about setting BABEL_DIR with a wrapper scriptnaddy2001-12-028-26/+55 * - update to 1.3.2petef2001-11-292-7/+4 * Update to 0.3.2.knu2001-11-283-4/+21 * Style police: WWW tags should either end in a file/script or TRAILING /; Fix ...lioux2001-11-211-1/+1 * Style police: WWW tags should either end in a file/script or TRAILING /; Fix ...lioux2001-11-212-2/+2 * chase checksum for repacked distfile almost an year ago.sf2001-11-063-2/+3 * Add ruby-bio (BioRuby), an integrated environment for Bioinformaticsknu2001-10-246-0/+91 * update WWW and master siteijliao2001-10-222-2/+10 * Remove a redundant trailing space.knu2001-10-211-1/+1 * - Update the included (optional) Biopython-CORBA pacakge to version 0.3.0wjv2001-10-025-263/+210 * Add nclever 4.0, a character-based version of NCBI's Entrez program.wjv2001-09-268-0/+105 * - Add NO_LATEST_LINK, which should've been there in the first place. :-(wjv2001-09-201-0/+1 * - Add installation of include fileswjv2001-09-194-134/+445 * style fix: un"echo" commandslioux2001-09-131-40/+40 * Update to 3.9lioux2001-09-1312-116/+161 * Bump png majorache2001-09-111-1/+1 * Fix a buglet with the use of XFREE86_VERSION without includingtobez2001-09-071-1/+3 * Make biology/rasmol work at all color depths.tobez2001-09-074-8/+91 * - Update to version 1.00.a3wjv2001-09-064-105/+167 * - Update to version 3.1wjv2001-08-294-6/+18 * - Update to version 1.0.3wjv2001-08-292-3/+3 * - Update to version 1.2.4wjv2001-08-222-2/+2 * - Update port to version 2.2gwjv2001-08-224-223/+34 * Add seqio 1.2.2, a set of C functions which can read/writewjv2001-08-2210-0/+400 * - Update to version 3.6.a2.1 - since the distribution tarball hadn't beenwjv2001-08-225-43/+30 * - Move the (very) long list of manpages from the port Makefile to a separatewjv2001-08-202-123/+240 * Update to 0.95.trevor2001-08-204-27/+30 * Remove a patch turd from the pkg-plistkris2001-08-201-1/+0 * Add treeviewx 0.1.1, a phylogenetic tree viewer.wjv2001-08-179-0/+82 * Add p5-bioperl-devel 0.9.0,wjv2001-08-148-0/+566 * Update to version 1.75wjv2001-08-134-14/+27 * - Properly list run-time dependencies in RUN_DEPENDS in Makefile.wjv2001-08-133-40/+46 * upgrade to 0.26ijliao2001-08-105-32/+30 * Add lamarc 2001.08.06,wjv2001-08-075-0/+42 * Add recombine 1.40, a program to fit population models across sites.wjv2001-08-067-0/+166 * Add fluctuate 1.30, a program to fit population models.wjv2001-08-067-0/+89 * Add coalesce 1.50, a program to fit population models.wjv2001-08-067-0/+73 * Correct my email address.wjv2001-08-061-1/+1 * Add migrate 1.2,wjv2001-08-066-0/+63 * Update maintainer's email address.wjv2001-08-061-1/+1 * - Update port to version 2.0.1wjv2001-08-035-24/+110 * add USE_XLIBlioux2001-07-311-0/+2 * This port require bison to build so add USE_BISON.steve2001-07-261-0/+1 * Remove obsolete pointer to online documentation.wjv2001-07-111-4/+2 * Update package's URL; my email address.wjv2001-07-112-3/+3 * Update Tony Maher's email address.fenner2001-07-111-1/+1 * ${PREFIX}/share/${PORTNAME} --> ${DATADIR}sobomax2001-07-101-2/+2 * Update to version 1.00.a2wjv2001-07-096-8/+46 * Add NOPORTDOCS support to pkg-plistijliao2001-07-0911-1381/+1380 * Update to version 1.3.0wjv2001-07-062-3/+3 * - General clean-up of port.wjv2001-07-055-38/+252 * - Update to version 0.7.1wjv2001-07-044-3/+24 * - Add %%PORTDOCS%% support to pkg-plist.wjv2001-07-042-3/+3 * Add grappa 1.0.2, Genome Rearrangements Analysis and Phylogenywjv2001-07-047-0/+64 * Add %%PORTDOCS%% support to pkg-plist, and tweak Makefile slightly to supportwjv2001-07-042-107/+107 * Add %%PORTDOCS%% suppor to pkg-plist.wjv2001-07-032-12/+12 * Add support for %%PORTDOCS%%.wjv2001-07-031-42/+42 * Replace erroneous usage of INSTALL_MAN with INSTALL_DATA.wjv2001-07-032-2/+2 * Update to version 3.04wjv2001-07-033-5/+5 * Update to version 1.82wjv2001-07-032-3/+2 * Use $FILESDIR rather than hard-coded path.wjv2001-06-291-1/+1 * Updating my email address in my remaining ports.wjv2001-06-273-3/+3 * Embarrassingly long overdue update to 0.7.0, including optional support forwjv2001-06-263-66/+300 * Update to version 2001.04.03; add installation of some documentation.wjv2001-06-205-30/+86 * Update to 1.00.a1; change MAINTAINER to my new address.wjv2001-06-156-124/+691 * Update to 1.13.3; remove bogus file.wjv2001-06-154-71/+9 * - Update to version 1.2.6akevlo2001-06-124-8/+9 * Distfile was moved and renamed.markp2001-06-112-3/+3 * Use proper POSIX syntax for `chown'.obrien2001-06-011-1/+1 * Update to version 1.13.1kevlo2001-05-305-42/+240 * math/numpy was renamed to math/py-numeric.sobomax2001-05-291-1/+1 * upgrade to 4.3.2ijliao2001-05-2714-458/+389 * Update the EMBOSS suite (biology/emboss) to version 1.12.0jeh2001-05-073-138/+25 * Updata biology/fasta3 to version 33.t08.d4jeh2001-05-073-8/+8 * Update distfile checksum (PORTREVISION bumped)olgeni2001-04-205-37/+14 * activate IGNOREFILES.sf2001-04-141-0/+3 * Ignore checksum. The distfile changes day by day.sf2001-04-131-1/+1 * This port require X libraries to build/run.steve2001-04-111-0/+1 * Overhaul QT/KDE support:will2001-04-031-2/+1 * update to 3.03mharo2001-04-024-27/+5 * updated port biology/phylip from vers 3.5 to 3.6mharo2001-04-025-94/+110 * - Update MASTER_SITES and WWW: linekevlo2001-03-314-32/+21 * Update to 33.t08.d3.sobomax2001-03-223-4/+3 * - Upgrade to version 1.70kevlo2001-03-135-18/+41 * Upgrade to 0.4.kuriyama2001-03-134-12/+12 * o update to 2.7.2.sf2001-03-132-5/+5 * pass maintainership to ports@.sf2001-03-131-1/+1 * Update to lastest versionkevlo2001-03-122-2/+3 * Update the EMBOSS suite to v1.11.0nbm2001-03-123-7/+12 * - A small bugfix lead to a rerelease without a version number change.nbm2001-03-122-1/+2 * Update to 0.85.trevor2001-03-122-2/+2 * Force -O0 on the Alpha.trevor2001-03-121-1/+7 * fix WWW:sf2001-03-091-1/+1 * update to 33.t08.d2.sf2001-03-082-2/+2 * gd.2, not gd.1ijliao2001-03-051-1/+1 * Change MASTER_SITE and FTP/WWW lines: caos.kun.nl is cmbi.kun.nl now.roam2001-03-052-3/+3 * Remove do-configure section, use PERL_CONFIGURE now.vanilla2001-03-011-1/+0 * Update to version 1.10.1kevlo2001-02-283-8/+7 * reimport biology/genpakijliao2001-02-288-0/+164 * module name conflict with print/gp, so remove it and I'll reimport it againijliao2001-02-288-163/+0 * add gpijliao2001-02-288-0/+163 * Update to version 1.10.0kevlo2001-02-205-24/+51 * The author (at my request) has gone back to a more FreeBSD-friendlytrevor2001-02-202-2/+1 * Update to 0.84.trevor2001-02-193-15/+14 * Update to version 2001-02-06jeh2001-02-192-2/+2 * Chase graphics/gd's shlib version bump.knu2001-02-121-1/+2 * - New port: biology/fasta3, which comprises the FASTA3 suite of DNA andjeh2001-02-129-0/+204 * New port: biology/fasta, the FASTA2 suite of DNA and protein sequencejeh2001-02-128-0/+151 * add gaussian98, an ab-initio molecular orbital calculation program.sf2001-02-1112-0/+822 * Update to 0.84a. Generate the plist.trevor2001-02-093-8/+10 * - Update EMBOSS (biology/emboss) from 1.9.0 to 1.9.1kevlo2001-01-2910-77/+118 * update from 3.7 to 3.8ijliao2001-01-2518-167/+706 * Upgrade to version 1.9.0kevlo2001-01-246-13/+47 * Massive style enforcement - use ^I instead of spaces for variables identation.sobomax2001-01-171-2/+2 * Clean up inefficient perl invocations; use multiple REs in the same call.will2001-01-081-2/+2 * Update to 1.2.6kevlo2000-12-234-7/+25 * Remove trailing period and package name from the pkg-comment.demon2000-12-191-1/+1 * Update to version 5.79.steve2000-12-113-26/+42 * Update distfiles' checksums after the distfiles have been rerolled yetroam2000-12-042-4/+5 * Distfile tarballs were rerolled without notice due to a minor bug.roam2000-12-011-4/+4 * - Update port biology/emboss from 1.7.0 to 1.8.0jeh2000-11-284-17/+124 * Make nolonger support :U. Fix to compensate for that.jeh2000-11-191-3/+6 * They made changes to the "blast" program.jeh2000-11-152-2/+3 * - This is a fairly extensive rework of this port.jeh2000-11-133-0/+56 * - This is a fairly extensive rework of this port.jeh2000-11-134-5/+150 * Change motif to a normal dependency. REQUIRES_MOTIF is now calledasami2000-11-081-1/+1 * Yes. They did re-roll this version, it is legit.jeh2000-11-032-2/+2 * Updated to new version. That is the pits, the day after it becomesjeh2000-11-024-4/+3 * Make portlint happy, remove a spacejeh2000-11-011-1/+1 * Update to version 1.7.0jeh2000-11-013-2/+11 * File missing in pkg-plistjeh2000-10-301-0/+1 * New Port: biology/ncbi-toolkitjeh2000-10-2911-0/+376 * Update biology/sim4 to 2000.10.19jeh2000-10-263-5/+7 * gmake is neededjeh2000-10-241-0/+1 * Update to version 0.6.2jeh2000-10-133-174/+132 * A file was added to distfile and then repackaged with the same name.jeh2000-10-133-2/+5 * Initial import of fastDNAml Version 1.2.2jeh2000-10-126-0/+93 * Missing " in post-patch targetjeh2000-10-111-1/+1 * PR 21608 was not processed as intented.jeh2000-10-112-21/+22 * Initial import of biology/biojavajeh2000-10-106-0/+661 * - Update to 1.6.0kevlo2000-10-103-363/+372 * - Update biology/p5-AcePerl from 1.62 to 1.67kevlo2000-10-106-61/+88 * Initiail version of nab (4.2)jeh2000-10-1017-0/+666 * This is nab (nucleic acid builder), a language for macromoleculesjeh2000-10-101-0/+1 * - Fix MASTER_SITES/DISTNAMEjeh2000-10-10