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|
--- Makefile.INCLUDE.orig 2012-04-17 15:56:21.000000000 -0500
+++ Makefile.INCLUDE 2013-10-30 08:19:45.000000000 -0500
@@ -48,7 +48,7 @@
## AFNI package, but included because they are useful. Some of
## them are Open Source programs, not from the AFNI group at all.
-EXTRAS = cjpeg djpeg whirlgif mpeg_encode myget Xphace rmz aiv mycat $(EXPROGS)
+EXTRAS = myget Xphace rmz aiv 3dClustBust $(EXPROGS)
# mpegtoppm in above list
@@ -58,7 +58,7 @@
PROGRAMS = afni to3d from3d abut 3dclust nsize 3dinfo 3dproject 3dmerge count \
sfim tfim ftosh 3dttest 3ddup imrotate imreg imstat 3dnvals \
fim2 imand FD2 sqwave immask imdump imaver 3dhistog 3dfim 3daxialize \
- cdf 2swap 4swap mritopgm 3dANOVA 3dANOVA2 3dANOVA3 plugout_tta \
+ 2swap 4swap mritopgm 3dANOVA 3dANOVA2 3dANOVA3 plugout_tta \
waver 3dnewid 3dcalc ccalc imcalc 1dmatcalc 3drefit 3dbucket \
3dNLfim 3dTSgen AlphaSim 3dFWHM plugout_tt 3dnoise plugout_ijk \
3dMannWhitney 3dWilcoxon 3dKruskalWallis 3dFriedman 3dRegAna \
@@ -70,7 +70,7 @@
3dWavelets 3dfim+ imcutup imcat 3dWinsor 3dZeropad 3dTagalign \
3dMean 3dAttribute cat_matvec 3dOverlap 3dClipLevel 3dZregrid \
3dEntropy 3ddelay ent16 3dRowFillin 1dgrayplot 3dToutcount 1dsum \
- 3dExtrema qhull strblast 3dConvolve 3dZcutup 3dZcat 3dTqual 3dGetrow \
+ 3dExtrema strblast 3dConvolve 3dZcutup 3dZcat 3dTqual 3dGetrow \
3dTcorrelate 3dAnatNudge 3dcopy Vecwarp 3dMINCtoAFNI 3dCM fdrval \
3dAFNItoANALYZE siemens_vision ge_header mayo_analyze 3dAFNItoNIFTI \
3dAutoTcorrelate 3dFDR rtfeedme 3dAutomask 3dAFNItoMINC 3dBrickStat \
@@ -89,7 +89,7 @@
3dBlurInMask 3dRank 3dFFT 1dgenARMA11 3dPeriodogram 1dAstrip \
3dLocalPV 3dBandpass 3dSetupGroupInCorr 3dGroupInCorr 3dTcorr1D \
3dClustSim 3dRetinoPhase 3dMaskToASCII 3dttest++ 3dDTtoDWI \
- niccc rbox qdelaunay 3dkmeans 3dXYZcat 3dPolyfit 3dNwarpApply \
+ niccc 3dkmeans 3dXYZcat 3dPolyfit 3dNwarpApply \
1dCorrelate 3dCountSpikes 3dNwarpCalc dicom_hinfo apsearch 1dBport \
3dNormalityTest \
$(EXTRAS)
@@ -97,7 +97,7 @@
PROGRAMS_NOPLUG = afni to3d from3d abut 3dclust nsize 3dinfo 3dproject 3dmerge \
sfim tfim ftosh 3dttest 3ddup imrotate imreg imstat 3dnoise count \
fim2 imand FD2 sqwave immask imdump imaver 3dhistog 3dfim imupsam \
- cdf 2swap 4swap mritopgm 3dANOVA 3dANOVA2 3dANOVA3 3drefit \
+ 2swap 4swap mritopgm 3dANOVA 3dANOVA2 3dANOVA3 3drefit \
waver 3dnewid 3dcalc ccalc imcalc 2dImReg 3dmaskave adwarp fdrval \
3dMannWhitney 3dWilcoxon 3dKruskalWallis 3dFriedman 3dRegAna \
imstack byteorder 3dDeconvolve 3dTcat 3drotate 3dvolreg 1dplot \
@@ -133,7 +133,7 @@
PROGRAMS_EXE = afni.exe to3d from3d abut 3dclust nsize 3dinfo 3dproject 3dmerge \
sfim tfim ftosh 3dttest 3ddup imrotate imreg imstat 3dnvals count \
fim2 imand FD2 sqwave immask imdump imaver 3dhistog 3dfim 3dGetrow \
- cdf 2swap 4swap mritopgm 3dANOVA 3dANOVA2 3dANOVA3 plugout_tta \
+ 2swap 4swap mritopgm 3dANOVA 3dANOVA2 3dANOVA3 plugout_tta \
waver 3dnewid 3dcalc ccalc imcalc 1dmatcalc 3drefit 3dbucket \
3dAFNItoNIML AlphaSim 3dFWHM plugout_tt 3dnoise plugout_ijk \
3dMannWhitney 3dWilcoxon 3dKruskalWallis 3dFriedman 3dRegAna \
@@ -282,6 +282,9 @@
3dbuc2fim:3dbuc2fim.o
$(CC) -o 3dbuc2fim 3dbuc2fim.o $(LFLAGS) $(LLIBS)
+3dClustBust:3dClustBust.c
+ $(CC) -o 3dClustBust 3dClustBust.c $(INFLAGS) $(LFLAGS) $(LLIBS)
+
mritopgm:mritopgm.c
$(CC) -o mritopgm mritopgm.c $(INFLAGS) $(LFLAGS) $(LLIBS)
@@ -2038,7 +2041,7 @@
# remake netcdf objects with PIC
shared_netcdf_attr:
$(RM) netcdf_attr.o
- $(MAKE) netcdf_attr.o CCMIN="${CCMIN} -fPIC"
+ $(GMAKE) netcdf_attr.o CCMIN="${CCMIN} -fPIC"
# same as .a, but build as a shared object
libmrix.a:$(IMOBJS) imseq.h display.h xim.h bbox.h xutil.h
@@ -2228,13 +2231,13 @@
f2c:
( cd f2cdir ; \
- $(MAKE) f2c clean 'RM=$(RM)' 'CC=$(CC)' 'AR=$(AR)' 'CCMIN=$(CCMIN)' \
+ $(GMAKE) f2c clean 'RM=$(RM)' 'CC=$(CC)' 'AR=$(AR)' 'CCMIN=$(CCMIN)' \
'RANLIB=$(RANLIB)' 'LDFLAGS=$(LDFLAGS)' 'IFLAGS=$(ISFLAGS)' ; \
$(MV) f2c .. ; )
libf2c.a:
( cd f2cdir ; \
- $(MAKE) libf2c.a clean 'RM=$(RM)' 'CC=$(CC)' 'AR=$(AR)' \
+ $(GMAKE) libf2c.a clean 'RM=$(RM)' 'CC=$(CC)' 'AR=$(AR)' \
'RANLIB=$(RANLIB)' 'LDFLAGS=$(LDFLAGS)' 'IFLAGS=$(ISFLAGS)' ; \
$(MV) libf2c.a .. ; )
@@ -2249,7 +2252,7 @@
libdl.a:dlcompat/dlfcn.h dlcompat/dlopen.c
( cd dlcompat ; \
- $(MAKE) libdl.a ; \
+ $(GMAKE) libdl.a ; \
$(CP) libdl.a dlfcn.h .. ; \
cd .. ; \
$(RANLIB) libdl.a ; )
@@ -2259,7 +2262,7 @@
libcoxplot.a:coxplot.h
( cd coxplot ; \
- $(MAKE) libcoxplot.a clean 'RM=$(RM)' 'CC=$(CC)' 'AR=$(AR)' \
+ $(GMAKE) libcoxplot.a clean 'RM=$(RM)' 'CC=$(CC)' 'AR=$(AR)' \
'RANLIB=$(RANLIB)' 'LDFLAGS=$(LDFLAGS)' 'IFLAGS=$(ISFLAGS)' ; \
$(MV) libcoxplot.a .. ; )
@@ -2305,26 +2308,26 @@
file_tool: ge4_header.o
( cd rickr ; \
- $(MAKE) file_tool 'RM=$(RM)' 'CC=$(CC)' 'IFLAGS=$(ISFLAGS)' \
+ $(GMAKE) file_tool 'RM=$(RM)' 'CC=$(CC)' 'IFLAGS=$(ISFLAGS)' \
'LFLAGS=$(LFLAGS)' 'LLIBS=$(LLIBS)' ; \
$(MV) file_tool .. ; )
Dimon: rickr/Dimon.c rickr/Imon.h rickr/realtime.c rickr/realtime.h
( cd rickr ; \
- $(MAKE) Dimon 'RM=$(RM)' 'CC=$(CC)' 'IFLAGS=$(ISFLAGS)' \
+ $(GMAKE) Dimon 'RM=$(RM)' 'CC=$(CC)' 'IFLAGS=$(ISFLAGS)' \
'LFLAGS=$(LFLAGS)' 'EXTRA_LIBS_2=$(EXTRA_LIBS_2)' \
'LGIFTI=$(LGIFTI)' ; \
$(MV) Dimon .. ; )
Imon: rickr/Imon.c rickr/Imon.h rickr/realtime.c rickr/realtime.h thd_iochan.o
( cd rickr ; \
- $(MAKE) Imon 'RM=$(RM)' 'CC=$(CC)' 'IFLAGS=$(ISFLAGS)' \
+ $(GMAKE) Imon 'RM=$(RM)' 'CC=$(CC)' 'IFLAGS=$(ISFLAGS)' \
'LFLAGS=$(LFLAGS)' 'EXTRA_LIBS_2=$(EXTRA_LIBS_2)' ; \
$(MV) Imon .. ; )
serial_helper: rickr/serial_helper.c
( cd rickr ; \
- $(MAKE) serial_helper 'RM=$(RM)' 'CC=$(CC)' 'IFLAGS=$(ISFLAGS)' \
+ $(GMAKE) serial_helper 'RM=$(RM)' 'CC=$(CC)' 'IFLAGS=$(ISFLAGS)' \
'LFLAGS=$(LFLAGS)' 'EXTRA_LIBS_2=$(EXTRA_LIBS_2)' ; \
$(MV) serial_helper .. ; )
@@ -2334,7 +2337,7 @@
gtest:
( cd gifti ; \
- $(MAKE) gtest 'RM=$(RM)' 'CC=$(CC)' 'IFLAGS=$(ISFLAGS)' \
+ $(GMAKE) gtest 'RM=$(RM)' 'CC=$(CC)' 'IFLAGS=$(ISFLAGS)' \
'LFLAGS=$(LFLAGS)' ; \
$(MV) gtest .. ; )
@@ -2343,7 +2346,7 @@
libvolpack.a:
( cd volpack ; \
- $(MAKE) libvolpack.a clean 'RM=$(RM)' 'CC=$(CCVOL)' 'AR=$(AR)' \
+ $(GMAKE) libvolpack.a clean 'RM=$(RM)' 'CC=$(CCVOL)' 'AR=$(AR)' \
'RANLIB=$(RANLIB)' 'LDFLAGS=$(LDFLAGS)' 'IFLAGS=$(ISFLAGS)' ; \
$(MV) libvolpack.a .. ; )
@@ -2358,7 +2361,7 @@
qhull:
( cd qhulldir ; \
- $(MAKE) qhull rbox qdelaunay clean \
+ $(GMAKE) qhull rbox qdelaunay clean \
'RM=$(RM)' 'CC=$(CC)' 'LFLAGS=$(LFLAGS)' ; \
$(MV) qhull rbox qdelaunay .. ; )
@@ -2366,26 +2369,26 @@
qhull.exe:
( cd qhulldir ; \
- $(MAKE) qhull clean 'RM=$(RM)' 'CC=$(CC)' 'LFLAGS=$(LFLAGS)' ; \
+ $(GMAKE) qhull clean 'RM=$(RM)' 'CC=$(CC)' 'LFLAGS=$(LFLAGS)' ; \
$(MV) qhull.exe .. ; )
#######
# 3DEdge library files - make them and move them up here
lib3DEdge.a:
- ( cd 3DEdge/src ; $(MAKE) clean lib3DEdge.a 'RM=$(RM)' 'AR=$(AR)' 'RANLIB=$(RANLIB)' 'CC=$(CCFAST)' 'IFLAGS=$(ISFLAGS)' 'LFLAGS=$(LFLAGS)' ; $(MV) *.a ../.. ; )
+ ( cd 3DEdge/src ; $(GMAKE) clean lib3DEdge.a 'RM=$(RM)' 'AR=$(AR)' 'RANLIB=$(RANLIB)' 'CC=$(CCFAST)' 'IFLAGS=$(ISFLAGS)' 'LFLAGS=$(LFLAGS)' ; $(MV) *.a ../.. ; )
#######
# Eispack and CDF library files - make them and move them up here
eis_bakvec.o:
- ( cd eispack/ ; $(MAKE) all 'CC=$(CCFAST)' 'CCSVD=$(CCSVD)' ; $(MV) *.o .. ; )
+ ( cd eispack/ ; $(GMAKE) all 'CC=$(CCFAST)' 'CCSVD=$(CCSVD)' ; $(MV) *.o .. ; )
#######
# Ditto for NIML objects
$(NIML_OBJS):niml.h
- ( cd niml/ ; $(MAKE) all 'CC=$(CC)' ; $(MV) *.o .. ; )
+ ( cd niml/ ; $(GMAKE) all 'CC=$(CC)' ; $(MV) *.o .. ; )
niml.h:niml/niml.h
$(CP) niml/niml.h .
@@ -2399,7 +2402,7 @@
CXX="" ; export CXX ; CC="${CCMIN}";export CC; \
$(RM) config.cache config.log config.status ; \
chmod ugo+x ./configure ; \
- ./configure ; $(MAKE) libsrc/all ; \
+ ./configure ; $(GMAKE) libsrc/all ; \
$(CP) libsrc/netcdf.h ../.. ; \
$(MV) libsrc/attr.o ../../netcdf_attr.o ; \
$(MV) libsrc/dim.o ../../netcdf_dim.o ; \
@@ -2414,14 +2417,14 @@
$(MV) libsrc/v2i.o ../../netcdf_v2i.o ; \
$(MV) libsrc/var.o ../../netcdf_var.o ; \
$(RM) config.cache config.log config.status ; \
- $(MAKE) clean ; )
+ $(GMAKE) clean ; )
#######
# 27 Jul 2001 - for fun
gifsicle:
( cd gifsicledir ; \
- $(MAKE) gifsicle clean 'RM=$(RM)' 'CC=$(CC)' 'LFLAGS=$(LFLAGS)' ; \
+ $(GMAKE) gifsicle clean 'RM=$(RM)' 'CC=$(CC)' 'LFLAGS=$(LFLAGS)' ; \
$(MV) gifsicle .. ; )
#######
@@ -2429,7 +2432,7 @@
mpeg_encode:
( cd mpeg_encodedir ; \
- $(MAKE) mpeg_encode clean 'RM=$(RM)' 'CC=$(CC)' 'LFLAGS=$(LFLAGS)' 'LLIBS=$(LLIBS)' ; \
+ $(GMAKE) mpeg_encode clean 'RM=$(RM)' 'CC=$(CC)' 'LFLAGS=$(LFLAGS)' 'LLIBS=$(LLIBS)' ; \
$(MV) mpeg_encode .. ; )
#######
@@ -2438,7 +2441,7 @@
mpegtoppm:
( cd mpegtoppm_dir ; chmod ugo+x ./configure ; \
./configure --disable-sdl --disable-mlib --without-x --disable-dependency-tracking --disable-accel-detect ; \
- $(MAKE) ; mv doc/sample2 ../mpegtoppm ; $(MAKE) clean ; )
+ $(GMAKE) ; mv doc/sample2 ../mpegtoppm ; $(GMAKE) clean ; )
#######
# 11 Sep 2002 - for fun
@@ -2450,12 +2453,12 @@
cjpeg:
( cd jpeg-6b ; $(RM) Makefile jconfig.h ; \
chmod ugo+x ./configure ; ./configure 'CC=$(CCMIN)' ; \
- $(MAKE) ; $(MV) cjpeg djpeg libjpeg.a .. ; \
- $(MAKE) clean ; $(RM) Makefile )
+ $(GMAKE) ; $(MV) cjpeg djpeg libjpeg.a .. ; \
+ $(GMAKE) clean ; $(RM) Makefile )
libXmHTML.a:
- ( cd XmHTML ; make lib 'CC=$(CC)' 'II=$(IFLAGS)' ; \
- $(MV) lib/libXmHTML.a .. ; make clean )
+ ( cd XmHTML ; gmake lib 'CC=$(CC)' 'II=$(IFLAGS)' ; \
+ $(MV) lib/libXmHTML.a .. ; gmake clean )
thd_xwebber.o:thd_xwebber.c
$(CC) -c thd_xwebber.c -I./XmHTML/include $(INFLAGS)
@@ -2465,7 +2468,7 @@
libfftw.a:
( cd fftw ; \
- $(MAKE) libfftw.a clean 'RM=$(RM)' 'CC=$(CCFAST)' 'AR=$(AR)' \
+ $(GMAKE) libfftw.a clean 'RM=$(RM)' 'CC=$(CCFAST)' 'AR=$(AR)' \
'RANLIB=$(RANLIB)' 'LDFLAGS=$(LDFLAGS)' 'IFLAGS=$(ISFLAGS)' ; \
$(MV) libfftw.a .. ; )
@@ -2480,7 +2483,7 @@
libclam.a:
( cd clamdir ; \
- $(MAKE) libclam.a clean 'RM=$(RM)' 'CC=$(CC)' 'AR=$(AR)' \
+ $(GMAKE) libclam.a clean 'RM=$(RM)' 'CC=$(CC)' 'AR=$(AR)' \
'RANLIB=$(RANLIB)' 'IFLAGS=-I..' ; \
$(MV) libclam.a .. ; )
@@ -2819,13 +2822,13 @@
3dkmeans: avovk/3dkmeans.c avovk/cluster_floatNOMASK.c avovk/thd_segtools_fNM.c
( cd avovk ; \
./@MakeLocalMake ;\
- $(MAKE) afni_all ; \
+ $(GMAKE) afni_all ; \
cd ../ ; )
libsegtools.a: avovk/cluster_floatNOMASK.c avovk/thd_segtools_fNM.c
( cd avovk ; \
./@MakeLocalMake ;\
- $(MAKE) libsegtools.a ; \
+ $(GMAKE) libsegtools.a ; \
$(CP) libsegtools.a ../; \
cd ../ ; )
@@ -2836,13 +2839,13 @@
ptaylor_all:
( cd ptaylor ; \
./@MakeLocalMake ;\
- $(MAKE) all ; \
+ $(GMAKE) all ; \
cd ../ ; )
libtracktools.a: ptaylor/libtracktools.a
( cd ptaylor ; \
./@MakeLocalMake ;\
- $(MAKE) libtracktools.a ; \
+ $(GMAKE) libtracktools.a ; \
$(CP) libtracktools.a ../; \
cd ../ ; )
@@ -2853,11 +2856,11 @@
libSUMA.a: libmri.a libmrix.a libcoxplot.a libf2c.a
( cd SUMA ; \
rm -f libSUMA.a ;\
- $(MAKE) -f $(SUMA_MAKEFILE_NAME) clean MarchingCubes.o libSUMA.a 'INSTALLDIR=$(INSTALLDIR)' \
+ $(GMAKE) -f $(SUMA_MAKEFILE_NAME) clean MarchingCubes.o libSUMA.a 'INSTALLDIR=$(INSTALLDIR)' \
'SUMA_INCLUDE_PATH=$(SUMA_INCLUDE_PATH)' \
'SUMA_BIN_ARCHIVE=$(SUMA_BIN_ARCHIVE)' \
'RANLIB=$(RANLIB)' \
- 'MAKE=$(MAKE)' \
+ 'MAKE=$(GMAKE)' \
'CC=$(CC)' 'RM=$(RM)' 'CEXTRA=$(CEXTRA)' 'MV=$(MV)' 'CP=$(CP)' \
'TAR=$(TAR)' 'MKDIR=$(MKDIR)'; \
cd ../ ; \
@@ -2868,7 +2871,7 @@
libgts.a:
( cd SUMA ; \
rm -f libgts.a ;\
- $(MAKE) -f $(SUMA_MAKEFILE_NAME) libgts.a ; \
+ $(GMAKE) -f $(SUMA_MAKEFILE_NAME) libgts.a ; \
cd ../ ; \
if [ ! -d $(INSTALLDIR) ]; then $(MKDIR) -p $(INSTALLDIR); echo WARNING: directory $(INSTALLDIR) has been created. ; fi ;\
$(CP) SUMA/libgts.a ${INSTALLDIR}; \
@@ -2877,11 +2880,11 @@
libGLws.a:
( cd SUMA ; \
rm -f libGLws.a ;\
- $(MAKE) -f $(SUMA_MAKEFILE_NAME) libGLws.a 'INSTALLDIR=$(INSTALLDIR)' \
+ $(GMAKE) -f $(SUMA_MAKEFILE_NAME) libGLws.a 'INSTALLDIR=$(INSTALLDIR)' \
'SUMA_INCLUDE_PATH=$(SUMA_INCLUDE_PATH)' \
'SUMA_BIN_ARCHIVE=$(SUMA_BIN_ARCHIVE)' \
'RANLIB=$(RANLIB)' \
- 'MAKE=$(MAKE)' \
+ 'MAKE=$(GMAKE)' \
'CC=$(CC)' 'RM=$(RM)' 'CEXTRA=$(CEXTRA)' 'MV=$(MV)' 'CP=$(CP)' \
'TAR=$(TAR)' 'MKDIR=$(MKDIR)'; \
cd ../ ; \
@@ -2892,7 +2895,7 @@
#link executables but check for libraries first and create them if needed
suma_exec:libGLws.a libSUMA.a libmri.a xutil.o LiteClue.o parser.o parser_int.o libmrix.a libcoxplot.a libf2c.a
( cd SUMA ; \
- $(MAKE) -f $(SUMA_MAKEFILE_NAME) testGL suma ScaleToMap CompareSurfaces \
+ $(GMAKE) -f $(SUMA_MAKEFILE_NAME) testGL suma ScaleToMap CompareSurfaces \
MakeColorMap ROI2dataset 3dVol2Surf \
3dSurf2Vol SurfMeasures SurfFWHM \
ConvertSurface ConvertDset SurfClust IsoSurface \
@@ -2909,7 +2912,7 @@
'SUMA_BIN_ARCHIVE=$(SUMA_BIN_ARCHIVE)' \
'SUMA_GLIB_VER=$(SUMA_GLIB_VER)' \
'RANLIB=$(RANLIB)' \
- 'MAKE=$(MAKE)' \
+ 'MAKE=$(GMAKE)' \
'CC=$(CC)' 'RM=$(RM)' 'CEXTRA=$(CEXTRA)' 'MV=$(MV)' 'CP=$(CP)' \
'TAR=$(TAR)' 'MKDIR=$(MKDIR)'; \
cd ../ ;)
@@ -2918,14 +2921,14 @@
#Do the GTS related stuff
suma_gts_progs: libgts.a
( cd SUMA ; \
- $(MAKE) -f $(SUMA_MAKEFILE_NAME) SurfMesh 'INSTALLDIR=$(INSTALLDIR)' \
+ $(GMAKE) -f $(SUMA_MAKEFILE_NAME) SurfMesh 'INSTALLDIR=$(INSTALLDIR)' \
'SUMA_INCLUDE_PATH=$(SUMA_INCLUDE_PATH)' \
'SUMA_LINK_PATH=$(SUMA_LINK_PATH)' \
'SUMA_LINK_LIB=$(SUMA_LINK_LIB)' \
'SUMA_BIN_ARCHIVE=$(SUMA_BIN_ARCHIVE)' \
'SUMA_GLIB_VER=$(SUMA_GLIB_VER)' \
'RANLIB=$(RANLIB)' \
- 'MAKE=$(MAKE)' \
+ 'MAKE=$(GMAKE)' \
'CC=$(CC)' 'RM=$(RM)' 'CEXTRA=$(CEXTRA)' 'MV=$(MV)' 'CP=$(CP)' \
'TAR=$(TAR)' 'MKDIR=$(MKDIR)'; \
cd ../ ;)
@@ -2934,14 +2937,14 @@
#run make all in SUMA directory, USE FOR DEVELOPMENT ONLY
suma_all:libmri.a xutil.o LiteClue.o parser.o parser_int.o libmrix.a libcoxplot.a libf2c.a
( cd SUMA ; \
- $(MAKE) -f $(SUMA_MAKEFILE_NAME) all 'INSTALLDIR=$(INSTALLDIR)' 'INSTALLDIR_SUMA=$(INSTALLDIR)' \
+ $(GMAKE) -f $(SUMA_MAKEFILE_NAME) all 'INSTALLDIR=$(INSTALLDIR)' 'INSTALLDIR_SUMA=$(INSTALLDIR)' \
'SUMA_INCLUDE_PATH=$(SUMA_INCLUDE_PATH)' \
'SUMA_LINK_PATH=$(SUMA_LINK_PATH)' \
'SUMA_LINK_LIB=$(SUMA_LINK_LIB)' \
'SUMA_BIN_ARCHIVE=$(SUMA_BIN_ARCHIVE)' \
'SUMA_GLIB_VER=$(SUMA_GLIB_VER)' \
'RANLIB=$(RANLIB)' \
- 'MAKE=$(MAKE)' \
+ 'MAKE=$(GMAKE)' \
'CC=$(CC)' 'RM=$(RM)' 'CEXTRA=$(CEXTRA)' 'MV=$(MV)' 'CP=$(CP)' \
'TAR=$(TAR)' 'MKDIR=$(MKDIR)'; \
cd ../ ;)
@@ -2950,14 +2953,14 @@
#run make anew in SUMA directory, USE FOR DEVELOPMENT ONLY
suma_anew:libmri.a xutil.o LiteClue.o parser.o parser_int.o libmrix.a libcoxplot.a libf2c.a
( cd SUMA ; \
- $(MAKE) -f $(SUMA_MAKEFILE_NAME) anew 'INSTALLDIR=$(INSTALLDIR)' 'INSTALLDIR_SUMA=$(INSTALLDIR)' \
+ $(GMAKE) -f $(SUMA_MAKEFILE_NAME) anew 'INSTALLDIR=$(INSTALLDIR)' 'INSTALLDIR_SUMA=$(INSTALLDIR)' \
'SUMA_INCLUDE_PATH=$(SUMA_INCLUDE_PATH)' \
'SUMA_LINK_PATH=$(SUMA_LINK_PATH)' \
'SUMA_LINK_LIB=$(SUMA_LINK_LIB)' \
'SUMA_BIN_ARCHIVE=$(SUMA_BIN_ARCHIVE)' \
'SUMA_GLIB_VER=$(SUMA_GLIB_VER)' \
'RANLIB=$(RANLIB)' \
- 'MAKE=$(MAKE)' \
+ 'MAKE=$(GMAKE)' \
'CC=$(CC)' 'RM=$(RM)' 'CEXTRA=$(CEXTRA)' 'MV=$(MV)' 'CP=$(CP)' \
'TAR=$(TAR)' 'MKDIR=$(MKDIR)'; \
cd ../ ;)
@@ -3080,7 +3083,7 @@
SurfToSurf Surf2VolCoord ROIgrow SurfDsetInfo SurfInfo AnalyzeTrace \
DriveSuma SurfDist SpharmReco SpharmDeco prompt_user SurfRetinoMap \
ParseName 3dGenPriors 3dSeg SurfExtrema 3dinfill; \
- $(MAKE) -f $(SUMA_MAKEFILE_NAME) testGL suma MakeColorMap ROI2dataset \
+ $(GMAKE) -f $(SUMA_MAKEFILE_NAME) testGL suma MakeColorMap ROI2dataset \
3dVol2Surf 3dSurf2Vol ScaleToMap SurfMeasures SurfFWHM \
MapIcosahedron CreateIcosahedron CompareSurfaces ConvertSurface ConvertDset \
SurfClust IsoSurface ConvexHull SurfaceMetrics SurfSmooth inspec \
@@ -3096,7 +3099,7 @@
'SUMA_BIN_ARCHIVE=$(SUMA_BIN_ARCHIVE)' \
'SUMA_GLIB_VER=$(SUMA_GLIB_VER)' \
'RANLIB=$(RANLIB)' \
- 'MAKE=$(MAKE)' \
+ 'MAKE=$(GMAKE)' \
'CC=$(CC)' 'RM=$(RM)' 'CEXTRA=$(CEXTRA)' 'MV=$(MV)' 'CP=$(CP)'\
'TAR=$(TAR)' 'MKDIR=$(MKDIR)'; \
cd ../ ;)
@@ -3155,6 +3158,7 @@
####
R_io.so:R_io.c libmri.a
( if which R >/dev/null ; then \
+ export MAKE=${GMAKE} ;\
echo PKG_CPPFLAGS = $(INFLAGS) > Makevars ;\
echo PKG_LIBS = $(LFLAGS) $(LLIBS) >> Makevars ;\
R CMD SHLIB R_io.c ; \
|
