Update lang/ghc 8.4.2 and the hs-* ports the newer versions

* Update lang/ghc to 8.4.2
* Update the boostrap compiler to 8.4.1
* Update the many hs-* ports
* Bump the rest

Thanks a lot to arrowd for doing all the heavy lifting :)

PR:		227968
Exp-run by:	antoine
Submitted by:	arrowd
Differential Revision:	https://reviews.freebsd.org/D15005

6 files changed, 0 insertions, 53 deletions

diff --git a/science/Makefile b/science/Makefile
index 47dd9c71f08..a595fa44411 100644
--- a/science/Makefile
+++ b/science/Makefile
@@ -76,7 +76,6 @@
     SUBDIR += hdf
     SUBDIR += hdf5
     SUBDIR += hdf5-18
-    SUBDIR += hs-bio
     SUBDIR += hypre
     SUBDIR += iboview
     SUBDIR += isaac-cfd
diff --git a/science/hs-bio/Makefile b/science/hs-bio/Makefile
deleted file mode 100644
index 0d7408275c9..00000000000
--- a/science/hs-bio/Makefile
+++ /dev/null
@@ -1,19 +0,0 @@
-# Created by: Giuseppe Pilichi aka Jacula Modyun <jacula@gmail.com>
-# $FreeBSD$
-
-PORTNAME=	bio
-PORTVERSION=	0.5.3
-PORTREVISION=	4
-CATEGORIES=	science haskell
-
-MAINTAINER=	haskell@FreeBSD.org
-COMMENT=	Bioinformatics library
-
-LICENSE=	LGPL21
-
-USE_CABAL=	mtl old-time parallel parsec QuickCheck>=2 random tagsoup>=0.8
-
-EXECUTABLE=	fastout flowclip flx frecover frename orf rselect-pe
-
-.include "${.CURDIR}/../../lang/ghc/bsd.cabal.mk"
-.include <bsd.port.mk>
diff --git a/science/hs-bio/distinfo b/science/hs-bio/distinfo
deleted file mode 100644
index f4b6aab534a..00000000000
--- a/science/hs-bio/distinfo
+++ /dev/null
@@ -1,2 +0,0 @@
-SHA256 (cabal/bio-0.5.3.tar.gz) = 42c8f9b83fea6bf51356afe1251910ba4421e0af0bb4f26431eaf385971d7eed
-SIZE (cabal/bio-0.5.3.tar.gz) = 103707
diff --git a/science/hs-bio/files/patch-Bio_Alignment_Bowtie.hs b/science/hs-bio/files/patch-Bio_Alignment_Bowtie.hs
deleted file mode 100644
index f7ba1305fb8..00000000000
--- a/science/hs-bio/files/patch-Bio_Alignment_Bowtie.hs
+++ /dev/null
@@ -1,7 +0,0 @@
---- Bio/Alignment/Bowtie.hs.orig	2013-07-20 07:25:31 UTC
-+++ Bio/Alignment/Bowtie.hs
-@@ -1,3 +1,4 @@
-+{-# LANGUAGE FlexibleContexts #-}
- {-| This module provides a data type to represent an alignment
- produced by the Bowtie short-read alignment tool (see
- <http://bowtie-bio.sourceforge.net/index.shtml>).
diff --git a/science/hs-bio/files/patch-bio.cabal b/science/hs-bio/files/patch-bio.cabal
deleted file mode 100644
index c34a3277d73..00000000000
--- a/science/hs-bio/files/patch-bio.cabal
+++ /dev/null
@@ -1,11 +0,0 @@
---- ./bio.cabal.orig	2011-12-15 12:56:28.000000000 +0100
-+++ ./bio.cabal	2011-12-17 11:02:26.000000000 +0100
-@@ -38,7 +38,7 @@
-   Default:           True
- 
- Library
--  Build-Depends:     base>=4 && <5, binary >=0.4 && <0.5, tagsoup>=0.8, bytestring >= 0.9.1,
-+  Build-Depends:     base>=4 && <5, binary >=0.4, tagsoup>=0.8, bytestring >= 0.9.1,
-                      containers, array, parallel, parsec, mtl, directory, QuickCheck >= 2
- 
-   Exposed-modules:   Bio.Sequence,
diff --git a/science/hs-bio/pkg-descr b/science/hs-bio/pkg-descr
deleted file mode 100644
index 8ebf118ce11..00000000000
--- a/science/hs-bio/pkg-descr
+++ /dev/null
@@ -1,13 +0,0 @@
-This is a collection of data structures and algorithms useful for
-building bioinformatics-related tools and utilities. Current list of
-features includes: a Sequence data type supporting protein and
-nucleotide sequences and conversion between them. As of version 0.4,
-different kinds of sequence have different types. Support for quality
-data, reading and writing Fasta formatted files, reading TwoBit and phd
-formats, and Roche/454 SFF files. Rudimentary (i.e. unoptimized) support
-for doing alignments - including dynamic adjustment of scores based on
-sequence quality. Also Blast output parsing. Partly implemented single
-linkage clustering, and multiple alignment. Reading Gene Ontology (GO)
-annotations (GOA) and definitions hierarchy.
-
-WWW: http://biohaskell.org/Libraries/Bio