1 files changed, 0 insertions, 72 deletions
diff --git a/biology/emboss/files/patch-marscan.c b/biology/emboss/files/patch-marscan.c
deleted file mode 100644
index 85481fedfe7..00000000000
--- a/biology/emboss/files/patch-marscan.c
+++ /dev/null
@@ -1,72 +0,0 @@
---- emboss/marscan.c.orig	Mon Jan 23 11:36:36 2006
-+++ emboss/marscan.c	Mon Jan 23 08:56:35 2006
-@@ -1,7 +1,7 @@
- /* @source marscan application
- **
- ** Finds MAR/SAR sites in nucleic sequences
--** @author: Copyright (C) Gary Williams (gwilliam@hgmp.mrc.ac.uk)
-+** @author Copyright (C) Gary Williams (gwilliam@hgmp.mrc.ac.uk)
- ** @@
- **
- ** This program is free software; you can redistribute it and/or
-@@ -249,33 +249,41 @@
- 			 amino8rev, carboxyl8rev, buf8rev, off8rev,
- 			 sotable8rev, solimit8rev, regexp8rev, skipm8rev,
- 			 &hits8rev, m8rev, &tidy8rev);
-+	ajDebug("Marscan '%S' hits %d:%d %d:%d\n", seqname,
-+		hits16, hits16rev,
-+		hits8, hits8rev);
-+
-+	/* initialise the output feature table */
-+	tab = ajFeattableNewDna(seqname);
-+
-+	/*
-+	**  append reverse lists to forward lists and sort them by match
-+	**  position
-+	*/
- 
--	if((hits16 || hits16rev) && (hits8 || hits8rev))
-+	if(hits8 || hits8rev)
- 	{
--	    /*
--	    **  append reverse lists to forward lists and sort them by match
--	    **  position
--	    */
- 	    ajListPushList(l8, &l8rev);
- 	    ajListSort(l8, embPatRestrictStartCompare);
--
-+	}
-+	if((hits16 || hits16rev))
-+	{
- 	    ajListPushList(l16, &l16rev);
- 	    ajListSort(l16, embPatRestrictStartCompare);
- 
--	    /* initialise the output feature table */
--	    if(!tab)
--		tab = ajFeattableNewDna(seqname);
--
--	    /*
--	    **  find pairs of hits within the required distance and output
--	    **  the results
--	    */
--	    marscan_stepdown(l16, l8, &tab);
--
--	    /* write features and tidy up */
--	    ajReportWrite(report, tab, seq);
--	    ajFeattableDel(&tab);
- 	}
-+
-+
-+	/*
-+	**  find pairs of hits within the required distance and output
-+	**  the results
-+	*/
-+	marscan_stepdown(l16, l8, &tab);
-+
-+	ajDebug("Marscan reportwrite '%S'\n", seqname);
-+	/* write features and tidy up */
-+	ajReportWrite(report, tab, seq);
-+	ajFeattableDel(&tab);
- 
-         while(ajListPop(l16,(void **)&aptr))
-             embMatMatchDel(&aptr);