From eb7bd2749298d7e92aadfacd75d6632846bc9daa Mon Sep 17 00:00:00 2001 From: demon Date: Tue, 11 May 2004 06:50:49 +0000 Subject: Avoid coredump in 'rrdtool graph -X ' Submitted by: "Leonid A. Lyamanov" --- databases/rrdtool10/files/patch-rrd_graph.c | 11 +++++++++++ 1 file changed, 11 insertions(+) create mode 100644 databases/rrdtool10/files/patch-rrd_graph.c (limited to 'databases/rrdtool10') diff --git a/databases/rrdtool10/files/patch-rrd_graph.c b/databases/rrdtool10/files/patch-rrd_graph.c new file mode 100644 index 00000000000..2ba5c0859e6 --- /dev/null +++ b/databases/rrdtool10/files/patch-rrd_graph.c @@ -0,0 +1,11 @@ +--- src/rrd_graph.c.orig Fri May 7 15:10:16 2004 ++++ src/rrd_graph.c Fri May 7 15:10:34 2004 +@@ -2966,7 +2966,7 @@ + + + opt = getopt_long(argc, argv, +- "s:e:x:y:v:w:h:iu:l:rb:oc:t:f:a:zgjFYAMXL:S:RB:O:U:", ++ "s:e:x:y:v:w:h:iu:l:rb:oc:t:f:a:zgjFYNAMX:L:S:RB:O:U:", + long_options, &option_index); + + if (opt == EOF) -- cgit by: portmgr (bapt) Differential Revision: https://reviews.freebsd.org/D911 update ports: 2014-08-23T18:04:58+00:00 pi pi@FreeBSD.org 2014-08-23T18:04:58+00:00 0d4dc2e5c8aa52558141f0a47ae160333cf66a79 biology/phrab biology/phred biology/consed Although these programs are licensed freely for academic and nonprofit purposes, users have to contact the authors to obtain the tarballs. PR: 191336 Submitted by: mzaki@m.u-tokyo.ac.jp (maintainer)
	biology/phrab
	biology/phred
	biology/consed

Although these programs are licensed freely for academic and nonprofit
purposes, users have to contact the authors to obtain the tarballs.

PR:		191336
Submitted by:	mzaki@m.u-tokyo.ac.jp (maintainer)
- Get Rid MD5 support 2011-03-19T12:38:54+00:00 miwi miwi@FreeBSD.org 2011-03-19T12:38:54+00:00 4ab972b7468e739167f0f48c87471c6c6b7da9e5

New port: biology/consed viewing and editing workbench for sequence 2008-05-24T07:04:45+00:00 edwin edwin@FreeBSD.org 2008-05-24T07:04:45+00:00 83b03fb599d22f1627a0d00403802b02656a7075 assembly Consed is a tool for viewing, editing, and finishing sequence assemblies. The port is constituted of 4 parts: biology/phred: base caller with quality evaluation biology/phrap: sequence assembler for shotgun sequencing biology/consed: workbench biology/phd2fasta: small utility All these can be used separately; however, most function of consed depends on the others. Although these programs are licensed freely for academic and nonprofit purposes, users have to contact the authors to get the softwares. Phred (including phd2fasta) and phrap are emailed, and consed can be downloaded to a restricted IP address. For commercial users, the licensing fee is ca. $10,000 at the time of writing. PR: ports/118548 Submitted by: Motomichi Matsuzaki <mzaki@biol.s.u-tokyo.ac.jp>
assembly

	Consed is a tool for viewing, editing, and finishing sequence
	assemblies.

	The port is constituted of 4 parts:
	biology/phred: base caller with quality evaluation
	biology/phrap: sequence assembler for shotgun sequencing
	biology/consed: workbench
	biology/phd2fasta: small utility

	All these can be used separately; however, most function
	of consed depends on the others.

	Although these programs are licensed freely for academic
	and nonprofit purposes, users have to contact the authors
	to get the softwares.
	Phred (including phd2fasta) and phrap are emailed,
	and consed can be downloaded to a restricted IP address.
	For commercial users, the licensing fee is ca. $10,000 at
	the time of writing.

PR:		ports/118548
Submitted by:	Motomichi Matsuzaki <mzaki@biol.s.u-tokyo.ac.jp>