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author | Viktor TrĂ³n <viktor.tron@gmail.com> | 2018-07-18 18:09:38 +0800 |
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committer | Anton Evangelatov <anton.evangelatov@gmail.com> | 2018-07-23 21:09:25 +0800 |
commit | fd982d3f3b32de61dafc32322de23350bf35b6e3 (patch) | |
tree | 40011945f3b1ce870192bda460e894ca18de363e /swarm/bmt/bmt.go | |
parent | 526abe27361c242dbad965c883b0c08858e07c4c (diff) | |
download | dexon-fd982d3f3b32de61dafc32322de23350bf35b6e3.tar.gz dexon-fd982d3f3b32de61dafc32322de23350bf35b6e3.tar.zst dexon-fd982d3f3b32de61dafc32322de23350bf35b6e3.zip |
swarm/bmt: async section writer interface to BMT (#778)
- AsyncHasher implements AsyncWriter interface
- add extra level for zerohashes in pool to lookup empty data hash
- remove unused segment, hash and depth fields from Tree
- Hash pkg function -> syncHash moved to test
- add asyncHash helper func to tests using shuffle
- add TestAsyncCorrectness to tests
- add BenchmarkBMTAsync to tests
- refactor benchmarks using subbenchmarks
- improved comments
- preinitialise base hashers on the nodes
Diffstat (limited to 'swarm/bmt/bmt.go')
-rw-r--r-- | swarm/bmt/bmt.go | 366 |
1 files changed, 247 insertions, 119 deletions
diff --git a/swarm/bmt/bmt.go b/swarm/bmt/bmt.go index 835587020..1a141047a 100644 --- a/swarm/bmt/bmt.go +++ b/swarm/bmt/bmt.go @@ -14,7 +14,7 @@ // You should have received a copy of the GNU Lesser General Public License // along with the go-ethereum library. If not, see <http://www.gnu.org/licenses/>. -// Package bmt provides a binary merkle tree implementation +// Package bmt provides a binary merkle tree implementation used for swarm chunk hash package bmt import ( @@ -26,16 +26,16 @@ import ( ) /* -Binary Merkle Tree Hash is a hash function over arbitrary datachunks of limited size +Binary Merkle Tree Hash is a hash function over arbitrary datachunks of limited size. It is defined as the root hash of the binary merkle tree built over fixed size segments -of the underlying chunk using any base hash function (e.g keccak 256 SHA3). -Chunk with data shorter than the fixed size are hashed as if they had zero padding +of the underlying chunk using any base hash function (e.g., keccak 256 SHA3). +Chunks with data shorter than the fixed size are hashed as if they had zero padding. BMT hash is used as the chunk hash function in swarm which in turn is the basis for the 128 branching swarm hash http://swarm-guide.readthedocs.io/en/latest/architecture.html#swarm-hash The BMT is optimal for providing compact inclusion proofs, i.e. prove that a -segment is a substring of a chunk starting at a particular offset +segment is a substring of a chunk starting at a particular offset. The size of the underlying segments is fixed to the size of the base hash (called the resolution of the BMT hash), Using Keccak256 SHA3 hash is 32 bytes, the EVM word size to optimize for on-chain BMT verification as well as the hash size optimal for inclusion proofs in the merkle tree of the swarm hash. @@ -46,11 +46,12 @@ Two implementations are provided: that is simple to understand * Hasher is optimized for speed taking advantage of concurrency with minimalistic control structure to coordinate the concurrent routines - It implements the following interfaces - * standard golang hash.Hash - * SwarmHash - * io.Writer - * TODO: SegmentWriter + + BMT Hasher implements the following interfaces + * standard golang hash.Hash - synchronous, reusable + * SwarmHash - SumWithSpan provided + * io.Writer - synchronous left-to-right datawriter + * AsyncWriter - concurrent section writes and asynchronous Sum call */ const ( @@ -69,7 +70,7 @@ type BaseHasherFunc func() hash.Hash // Hasher a reusable hasher for fixed maximum size chunks representing a BMT // - implements the hash.Hash interface // - reuses a pool of trees for amortised memory allocation and resource control -// - supports order-agnostic concurrent segment writes (TODO:) +// - supports order-agnostic concurrent segment writes and section (double segment) writes // as well as sequential read and write // - the same hasher instance must not be called concurrently on more than one chunk // - the same hasher instance is synchronously reuseable @@ -81,8 +82,7 @@ type Hasher struct { bmt *tree // prebuilt BMT resource for flowcontrol and proofs } -// New creates a reusable Hasher -// implements the hash.Hash interface +// New creates a reusable BMT Hasher that // pulls a new tree from a resource pool for hashing each chunk func New(p *TreePool) *Hasher { return &Hasher{ @@ -90,9 +90,9 @@ func New(p *TreePool) *Hasher { } } -// TreePool provides a pool of trees used as resources by Hasher -// a tree popped from the pool is guaranteed to have clean state -// for hashing a new chunk +// TreePool provides a pool of trees used as resources by the BMT Hasher. +// A tree popped from the pool is guaranteed to have a clean state ready +// for hashing a new chunk. type TreePool struct { lock sync.Mutex c chan *tree // the channel to obtain a resource from the pool @@ -101,7 +101,7 @@ type TreePool struct { SegmentCount int // the number of segments on the base level of the BMT Capacity int // pool capacity, controls concurrency Depth int // depth of the bmt trees = int(log2(segmentCount))+1 - Datalength int // the total length of the data (count * size) + Size int // the total length of the data (count * size) count int // current count of (ever) allocated resources zerohashes [][]byte // lookup table for predictable padding subtrees for all levels } @@ -112,12 +112,12 @@ func NewTreePool(hasher BaseHasherFunc, segmentCount, capacity int) *TreePool { // initialises the zerohashes lookup table depth := calculateDepthFor(segmentCount) segmentSize := hasher().Size() - zerohashes := make([][]byte, depth) + zerohashes := make([][]byte, depth+1) zeros := make([]byte, segmentSize) zerohashes[0] = zeros h := hasher() - for i := 1; i < depth; i++ { - zeros = doHash(h, nil, zeros, zeros) + for i := 1; i < depth+1; i++ { + zeros = doSum(h, nil, zeros, zeros) zerohashes[i] = zeros } return &TreePool{ @@ -126,7 +126,7 @@ func NewTreePool(hasher BaseHasherFunc, segmentCount, capacity int) *TreePool { SegmentSize: segmentSize, SegmentCount: segmentCount, Capacity: capacity, - Datalength: segmentCount * segmentSize, + Size: segmentCount * segmentSize, Depth: depth, zerohashes: zerohashes, } @@ -155,7 +155,7 @@ func (p *TreePool) reserve() *tree { select { case t = <-p.c: default: - t = newTree(p.SegmentSize, p.Depth) + t = newTree(p.SegmentSize, p.Depth, p.hasher) p.count++ } return t @@ -173,29 +173,28 @@ func (p *TreePool) release(t *tree) { // the tree is 'locked' while not in the pool type tree struct { leaves []*node // leaf nodes of the tree, other nodes accessible via parent links - cur int // index of rightmost currently open segment + cursor int // index of rightmost currently open segment offset int // offset (cursor position) within currently open segment - segment []byte // the rightmost open segment (not complete) section []byte // the rightmost open section (double segment) - depth int // number of levels result chan []byte // result channel - hash []byte // to record the result span []byte // The span of the data subsumed under the chunk } // node is a reuseable segment hasher representing a node in a BMT type node struct { - isLeft bool // whether it is left side of the parent double segment - parent *node // pointer to parent node in the BMT - state int32 // atomic increment impl concurrent boolean toggle - left, right []byte // this is where the content segment is set + isLeft bool // whether it is left side of the parent double segment + parent *node // pointer to parent node in the BMT + state int32 // atomic increment impl concurrent boolean toggle + left, right []byte // this is where the two children sections are written + hasher hash.Hash // preconstructed hasher on nodes } // newNode constructs a segment hasher node in the BMT (used by newTree) -func newNode(index int, parent *node) *node { +func newNode(index int, parent *node, hasher hash.Hash) *node { return &node{ parent: parent, isLeft: index%2 == 0, + hasher: hasher, } } @@ -253,16 +252,21 @@ func (t *tree) draw(hash []byte) string { // newTree initialises a tree by building up the nodes of a BMT // - segment size is stipulated to be the size of the hash -func newTree(segmentSize, depth int) *tree { - n := newNode(0, nil) +func newTree(segmentSize, depth int, hashfunc func() hash.Hash) *tree { + n := newNode(0, nil, hashfunc()) prevlevel := []*node{n} // iterate over levels and creates 2^(depth-level) nodes + // the 0 level is on double segment sections so we start at depth - 2 since count := 2 for level := depth - 2; level >= 0; level-- { nodes := make([]*node, count) for i := 0; i < count; i++ { parent := prevlevel[i/2] - nodes[i] = newNode(i, parent) + var hasher hash.Hash + if level == 0 { + hasher = hashfunc() + } + nodes[i] = newNode(i, parent, hasher) } prevlevel = nodes count *= 2 @@ -270,13 +274,12 @@ func newTree(segmentSize, depth int) *tree { // the datanode level is the nodes on the last level return &tree{ leaves: prevlevel, - result: make(chan []byte, 1), - segment: make([]byte, segmentSize), + result: make(chan []byte), section: make([]byte, 2*segmentSize), } } -// methods needed by hash.Hash +// methods needed to implement hash.Hash // Size returns the size func (h *Hasher) Size() int { @@ -285,63 +288,40 @@ func (h *Hasher) Size() int { // BlockSize returns the block size func (h *Hasher) BlockSize() int { - return h.pool.SegmentSize -} - -// Hash hashes the data and the span using the bmt hasher -func Hash(h *Hasher, span, data []byte) []byte { - h.ResetWithLength(span) - h.Write(data) - return h.Sum(nil) -} - -// Datalength returns the maximum data size that is hashed by the hasher = -// segment count times segment size -func (h *Hasher) DataLength() int { - return h.pool.Datalength + return 2 * h.pool.SegmentSize } -// Sum returns the hash of the buffer +// Sum returns the BMT root hash of the buffer +// using Sum presupposes sequential synchronous writes (io.Writer interface) // hash.Hash interface Sum method appends the byte slice to the underlying // data before it calculates and returns the hash of the chunk // caller must make sure Sum is not called concurrently with Write, writeSection -// and WriteSegment (TODO:) -func (h *Hasher) Sum(b []byte) (r []byte) { - return h.sum(b, true, true) -} - -// sum implements Sum taking parameters -// * if the tree is released right away -// * if sequential write is used (can read sections) -func (h *Hasher) sum(b []byte, release, section bool) (r []byte) { - t := h.bmt - bh := h.pool.hasher() - go h.writeSection(t.cur, t.section, true) - bmtHash := <-t.result +func (h *Hasher) Sum(b []byte) (s []byte) { + t := h.getTree() + // write the last section with final flag set to true + go h.writeSection(t.cursor, t.section, true, true) + // wait for the result + s = <-t.result span := t.span - // fmt.Println(t.draw(bmtHash)) - if release { - h.releaseTree() - } + // release the tree resource back to the pool + h.releaseTree() // b + sha3(span + BMT(pure_chunk)) - if span == nil { - return append(b, bmtHash...) + if len(span) == 0 { + return append(b, s...) } - return doHash(bh, b, span, bmtHash) + return doSum(h.pool.hasher(), b, span, s) } -// Hasher implements the SwarmHash interface - -// Hasher implements the io.Writer interface +// methods needed to implement the SwarmHash and the io.Writer interfaces -// Write fills the buffer to hash, -// with every full segment calls writeSection +// Write calls sequentially add to the buffer to be hashed, +// with every full segment calls writeSection in a go routine func (h *Hasher) Write(b []byte) (int, error) { l := len(b) - if l <= 0 { + if l == 0 { return 0, nil } - t := h.bmt + t := h.getTree() secsize := 2 * h.pool.SegmentSize // calculate length of missing bit to complete current open section smax := secsize - t.offset @@ -359,20 +339,21 @@ func (h *Hasher) Write(b []byte) (int, error) { return l, nil } } else { - if t.cur == h.pool.SegmentCount*2 { + // if end of a section + if t.cursor == h.pool.SegmentCount*2 { return 0, nil } } - // read full segments and the last possibly partial segment from the input buffer + // read full sections and the last possibly partial section from the input buffer for smax < l { // section complete; push to tree asynchronously - go h.writeSection(t.cur, t.section, false) + go h.writeSection(t.cursor, t.section, true, false) // reset section t.section = make([]byte, secsize) - // copy from imput buffer at smax to right half of section + // copy from input buffer at smax to right half of section copy(t.section, b[smax:]) // advance cursor - t.cur++ + t.cursor++ // smax here represents successive offsets in the input buffer smax += secsize } @@ -382,83 +363,225 @@ func (h *Hasher) Write(b []byte) (int, error) { // Reset needs to be called before writing to the hasher func (h *Hasher) Reset() { - h.getTree() + h.releaseTree() } -// Hasher implements the SwarmHash interface +// methods needed to implement the SwarmHash interface // ResetWithLength needs to be called before writing to the hasher // the argument is supposed to be the byte slice binary representation of // the length of the data subsumed under the hash, i.e., span func (h *Hasher) ResetWithLength(span []byte) { h.Reset() - h.bmt.span = span + h.getTree().span = span } // releaseTree gives back the Tree to the pool whereby it unlocks // it resets tree, segment and index func (h *Hasher) releaseTree() { t := h.bmt - if t != nil { - t.cur = 0 + if t == nil { + return + } + h.bmt = nil + go func() { + t.cursor = 0 t.offset = 0 t.span = nil - t.hash = nil - h.bmt = nil t.section = make([]byte, h.pool.SegmentSize*2) - t.segment = make([]byte, h.pool.SegmentSize) + select { + case <-t.result: + default: + } h.pool.release(t) + }() +} + +// NewAsyncWriter extends Hasher with an interface for concurrent segment/section writes +func (h *Hasher) NewAsyncWriter(double bool) *AsyncHasher { + secsize := h.pool.SegmentSize + if double { + secsize *= 2 + } + write := func(i int, section []byte, final bool) { + h.writeSection(i, section, double, final) } + return &AsyncHasher{ + Hasher: h, + double: double, + secsize: secsize, + write: write, + } +} + +// SectionWriter is an asynchronous segment/section writer interface +type SectionWriter interface { + Reset() // standard init to be called before reuse + Write(index int, data []byte) // write into section of index + Sum(b []byte, length int, span []byte) []byte // returns the hash of the buffer + SectionSize() int // size of the async section unit to use } -// TODO: writeSegment writes the ith segment into the BMT tree -// func (h *Hasher) writeSegment(i int, s []byte) { -// go h.run(h.bmt.leaves[i/2], h.pool.hasher(), i%2 == 0, s) -// } +// AsyncHasher extends BMT Hasher with an asynchronous segment/section writer interface +// AsyncHasher is unsafe and does not check indexes and section data lengths +// it must be used with the right indexes and length and the right number of sections +// +// behaviour is undefined if +// * non-final sections are shorter or longer than secsize +// * if final section does not match length +// * write a section with index that is higher than length/secsize +// * set length in Sum call when length/secsize < maxsec +// +// * if Sum() is not called on a Hasher that is fully written +// a process will block, can be terminated with Reset +// * it will not leak processes if not all sections are written but it blocks +// and keeps the resource which can be released calling Reset() +type AsyncHasher struct { + *Hasher // extends the Hasher + mtx sync.Mutex // to lock the cursor access + double bool // whether to use double segments (call Hasher.writeSection) + secsize int // size of base section (size of hash or double) + write func(i int, section []byte, final bool) +} + +// methods needed to implement AsyncWriter + +// SectionSize returns the size of async section unit to use +func (sw *AsyncHasher) SectionSize() int { + return sw.secsize +} + +// Write writes the i-th section of the BMT base +// this function can and is meant to be called concurrently +// it sets max segment threadsafely +func (sw *AsyncHasher) Write(i int, section []byte) { + sw.mtx.Lock() + defer sw.mtx.Unlock() + t := sw.getTree() + // cursor keeps track of the rightmost section written so far + // if index is lower than cursor then just write non-final section as is + if i < t.cursor { + // if index is not the rightmost, safe to write section + go sw.write(i, section, false) + return + } + // if there is a previous rightmost section safe to write section + if t.offset > 0 { + if i == t.cursor { + // i==cursor implies cursor was set by Hash call so we can write section as final one + // since it can be shorter, first we copy it to the padded buffer + t.section = make([]byte, sw.secsize) + copy(t.section, section) + go sw.write(i, t.section, true) + return + } + // the rightmost section just changed, so we write the previous one as non-final + go sw.write(t.cursor, t.section, false) + } + // set i as the index of the righmost section written so far + // set t.offset to cursor*secsize+1 + t.cursor = i + t.offset = i*sw.secsize + 1 + t.section = make([]byte, sw.secsize) + copy(t.section, section) +} + +// Sum can be called any time once the length and the span is known +// potentially even before all segments have been written +// in such cases Sum will block until all segments are present and +// the hash for the length can be calculated. +// +// b: digest is appended to b +// length: known length of the input (unsafe; undefined if out of range) +// meta: metadata to hash together with BMT root for the final digest +// e.g., span for protection against existential forgery +func (sw *AsyncHasher) Sum(b []byte, length int, meta []byte) (s []byte) { + sw.mtx.Lock() + t := sw.getTree() + if length == 0 { + sw.mtx.Unlock() + s = sw.pool.zerohashes[sw.pool.Depth] + } else { + // for non-zero input the rightmost section is written to the tree asynchronously + // if the actual last section has been written (t.cursor == length/t.secsize) + maxsec := (length - 1) / sw.secsize + if t.offset > 0 { + go sw.write(t.cursor, t.section, maxsec == t.cursor) + } + // set cursor to maxsec so final section is written when it arrives + t.cursor = maxsec + t.offset = length + result := t.result + sw.mtx.Unlock() + // wait for the result or reset + s = <-result + } + // relesase the tree back to the pool + sw.releaseTree() + // if no meta is given just append digest to b + if len(meta) == 0 { + return append(b, s...) + } + // hash together meta and BMT root hash using the pools + return doSum(sw.pool.hasher(), b, meta, s) +} // writeSection writes the hash of i-th section into level 1 node of the BMT tree -func (h *Hasher) writeSection(i int, section []byte, final bool) { +func (h *Hasher) writeSection(i int, section []byte, double bool, final bool) { // select the leaf node for the section - n := h.bmt.leaves[i] - isLeft := n.isLeft - n = n.parent - bh := h.pool.hasher() - // hash the section - s := doHash(bh, nil, section) + var n *node + var isLeft bool + var hasher hash.Hash + var level int + t := h.getTree() + if double { + level++ + n = t.leaves[i] + hasher = n.hasher + isLeft = n.isLeft + n = n.parent + // hash the section + section = doSum(hasher, nil, section) + } else { + n = t.leaves[i/2] + hasher = n.hasher + isLeft = i%2 == 0 + } // write hash into parent node if final { // for the last segment use writeFinalNode - h.writeFinalNode(1, n, bh, isLeft, s) + h.writeFinalNode(level, n, hasher, isLeft, section) } else { - h.writeNode(n, bh, isLeft, s) + h.writeNode(n, hasher, isLeft, section) } } // writeNode pushes the data to the node -// if it is the first of 2 sisters written the routine returns +// if it is the first of 2 sisters written, the routine terminates // if it is the second, it calculates the hash and writes it // to the parent node recursively +// since hashing the parent is synchronous the same hasher can be used func (h *Hasher) writeNode(n *node, bh hash.Hash, isLeft bool, s []byte) { level := 1 for { // at the root of the bmt just write the result to the result channel if n == nil { - h.bmt.result <- s + h.getTree().result <- s return } - // otherwise assign child hash to branc + // otherwise assign child hash to left or right segment if isLeft { n.left = s } else { n.right = s } - // the child-thread first arriving will quit + // the child-thread first arriving will terminate if n.toggle() { return } - // the thread coming later now can be sure both left and right children are written - // it calculates the hash of left|right and pushes it to the parent - s = doHash(bh, nil, n.left, n.right) + // the thread coming second now can be sure both left and right children are written + // so it calculates the hash of left|right and pushes it to the parent + s = doSum(bh, nil, n.left, n.right) isLeft = n.isLeft n = n.parent level++ @@ -476,7 +599,7 @@ func (h *Hasher) writeFinalNode(level int, n *node, bh hash.Hash, isLeft bool, s // at the root of the bmt just write the result to the result channel if n == nil { if s != nil { - h.bmt.result <- s + h.getTree().result <- s } return } @@ -485,25 +608,28 @@ func (h *Hasher) writeFinalNode(level int, n *node, bh hash.Hash, isLeft bool, s // coming from left sister branch // when the final section's path is going via left child node // we include an all-zero subtree hash for the right level and toggle the node. - // when the path is going through right child node, nothing to do n.right = h.pool.zerohashes[level] if s != nil { n.left = s // if a left final node carries a hash, it must be the first (and only thread) // so the toggle is already in passive state no need no call // yet thread needs to carry on pushing hash to parent + noHash = false } else { // if again first thread then propagate nil and calculate no hash noHash = n.toggle() } } else { // right sister branch - // if s is nil, then thread arrived first at previous node and here there will be two, - // so no need to do anything if s != nil { + // if hash was pushed from right child node, write right segment change state n.right = s + // if toggle is true, we arrived first so no hashing just push nil to parent noHash = n.toggle() + } else { + // if s is nil, then thread arrived first at previous node and here there will be two, + // so no need to do anything and keep s = nil for parent noHash = true } } @@ -513,15 +639,16 @@ func (h *Hasher) writeFinalNode(level int, n *node, bh hash.Hash, isLeft bool, s if noHash { s = nil } else { - s = doHash(bh, nil, n.left, n.right) + s = doSum(bh, nil, n.left, n.right) } + // iterate to parent isLeft = n.isLeft n = n.parent level++ } } -// getTree obtains a BMT resource by reserving one from the pool +// getTree obtains a BMT resource by reserving one from the pool and assigns it to the bmt field func (h *Hasher) getTree() *tree { if h.bmt != nil { return h.bmt @@ -539,7 +666,7 @@ func (n *node) toggle() bool { } // calculates the hash of the data using hash.Hash -func doHash(h hash.Hash, b []byte, data ...[]byte) []byte { +func doSum(h hash.Hash, b []byte, data ...[]byte) []byte { h.Reset() for _, v := range data { h.Write(v) @@ -547,6 +674,7 @@ func doHash(h hash.Hash, b []byte, data ...[]byte) []byte { return h.Sum(b) } +// hashstr is a pretty printer for bytes used in tree.draw func hashstr(b []byte) string { end := len(b) if end > 4 { |