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* - Update to 1.53wen2017-07-232-4/+4
* Deprecate ports BROKEN for more than 6 monthsantoine2017-07-221-0/+2
* biology/seaview: Update version 4.6.1=>4.6.2bofh2017-07-222-4/+4
* Chase next distfile update. Upstream contacted whether we would be allowed to...jmd2017-07-142-4/+4
* biology/molden: Unbreak by chasing their latest opaque update to the distribu...jmd2017-07-122-7/+5
* Update math/gsl to 2.4tcberner2017-07-041-1/+1
* biology/diamond: Update to version 0.9.9jrm2017-07-042-4/+4
* Update devel/readline to 7.0 patch 3sunpoet2017-06-271-1/+1
* Begin deorbit burn of ia64. We have not attempted to build packages forlinimon2017-06-251-1/+1
* Mark BROKEN.mat2017-06-221-0/+2
* biology/diamond: Update to version 0.9.8jrm2017-06-162-4/+4
* - Update WWWamdmi32017-06-102-8/+7
* - Update to 0.11.2.2wen2017-06-102-4/+4
* Previous commit unbroke the port.linimon2017-06-031-2/+0
* biology/diamond: Update to version 0.9.4jrm2017-06-032-4/+4
* Remove outdated PERL_LEVEL checksunpoet2017-06-021-8/+2
* Remove outdated PERL_LEVEL checksunpoet2017-06-021-8/+2
* Update WWWsunpoet2017-05-301-1/+1
* biology/diamond: Update to version 0.9.3jrm2017-05-292-4/+4
* Mark some ports failing on armv6, for errors classified as "clang".linimon2017-05-271-0/+2
* Mark some ports failing on armv6, for errors classified as "???".linimon2017-05-272-3/+6
* biology/molden: Chase recent upstream change of molden distfile.jmd2017-05-242-4/+4
* - Update to 0.11.2.1joneum2017-05-242-5/+5
* biology/diamond: Update to version 0.9.1jrm2017-05-232-6/+6
* Revision bump of all ports with USE_GL after consolidation of mesa-libsrezny2017-05-233-3/+3
* It is possible that r441426 will fix the build problem on armv6. Givelinimon2017-05-221-1/+0
* Mark some ports failing on power64. In cases where the error messagelinimon2017-05-221-0/+2
* Mark BROKEN: checksum and size mismatchantoine2017-05-201-0/+2
* - Update to 5.15.0wen2017-05-183-3/+14
* Mark some ports failing on power64. In cases where the error messagelinimon2017-05-135-3/+6
* - Update to 0.11.1miwi2017-05-082-4/+4
* - Update to 1.5.1miwi2017-05-072-6/+4
* bx-python is a python library and associated set of scripts to allow for rapidmiwi2017-05-064-0/+47
* pysam is a lightweight wrapper of the htslib C-API and provides facilities tomiwi2017-05-065-0/+47
* - Update to 1.69wen2017-05-032-4/+4
* devel/boost-*: update to 1.64.0jbeich2017-05-021-1/+1
* Update math/gsl to 2.3tcberner2017-05-021-0/+1
* Provide error messages for some ports failing on aarch64, and, in alinimon2017-05-022-0/+5
* 2017-04-30 devel/stormlib-ghost++: Unfetchable for more than six months (goog...ler2017-04-305-79/+0
* biology/py-biom-format: Update to version 2.1.6jrm2017-04-292-4/+5
* - Fix shebangsmiwi2017-04-221-2/+3
* - Fix shebangsmiwi2017-04-221-3/+4
* - Fix shebangsamdmi32017-04-221-3/+7
* biology/diamond: Update to version 0.8.38jrm2017-04-212-6/+5
* biology/seaview: Update version 4.6=>4.6.1bofh2017-04-122-4/+5
* biology/diamond: Update to version 0.8.37jrm2017-04-022-5/+5
* Bump PORTREVISIONs for ports depending on the canonical version of GCC andgerald2017-04-0116-11/+16
* Update devel/tbb to 2017.5martymac2017-03-071-0/+1
* Mark the remaining ports depending on Google Code as DEPRECATED, with anmat2017-03-041-0/+2
* - Update to 1.42wen2017-03-012-4/+4
* Fix USE_GITHUB's GH_TAGNAME usage.mat2017-02-282-5/+5
* biology/plinkseq: unbreak with clang 4.0jbeich2017-02-272-0/+12
* biology/bowtie2: update to 2.3.0jbeich2017-02-274-6/+48
* Mark a few more ports that create large logfiles broken on armv6.linimon2017-02-261-0/+2
* Mark various ports as broken on armv6: invokes x86 asm.linimon2017-02-262-0/+2
* - Update to 1.14.9danilo2017-02-253-6/+12
* Move -fPIC to where Linux puts it so it is limited to a single library.tijl2017-02-142-4/+2
* biology/diamond: Update to version 0.8.36.jrm2017-02-122-4/+4
* biology/molden: Unbreak port, regenerate checksums, increment PORTREVISION.jmd2017-02-112-7/+5
* Add -fPIC to various ports to enable them to build on armv6.linimon2017-02-101-8/+3
* - Mark BROKEN: does not fetch, size/checksum mismatchamdmi32017-02-071-0/+2
* Update to 1.5.1sunpoet2017-02-072-9/+8
* biology/diamond: Update to version 0.8.35.jrm2017-02-062-5/+5
* Move devel/rubygem-bio to biology/rubygem-biosunpoet2017-02-054-0/+36
* Bump PORTREVISION for ports affected by the fix the last commit.mat2017-02-013-1/+3
* Mark various ports broken on aarch64 and armv6.linimon2017-01-311-0/+2
* biology/diamond: Update to version 0.8.34.jrm2017-01-232-4/+4
* Update WWW: SF redirects to https://sourceforge.net/projects/<PROJECT_NAME>/sunpoet2017-01-213-3/+3
* biology/diamond: Update to version 0.8.32.jrm2017-01-162-4/+4
* biology/diamond: Update to version 0.8.31.jrm2017-01-132-4/+4
* - Remove always-true/false conditions after FreeBSD 9, 10.1, 10.2 EOLamdmi32017-01-092-15/+3
* devel/boost-*: update to 1.63.0jbeich2017-01-061-1/+1
* Never set WRKSRC when using USE_GITHUB.mat2017-01-042-4/+0
* Assume "pkg-config zlib" works after 9.x reached EOLjbeich2017-01-041-3/+0
* Remove BROKEN_FreeBSD_9sunpoet2017-01-012-3/+0
* biology/diamond: Update to version 0.8.30jrm2016-12-312-4/+4
* biology/ncbi-blast+: Add MAKE_JOBS_UNSAFEjrm2016-12-231-0/+2
* - Update to 1.007001sunpoet2016-12-212-4/+4
* biology/bowtie2: Update to version 2.2.9jrm2016-12-212-14/+18
* biology/cd-hit: Update to bug-fix release 4.6.6jrm2016-12-212-5/+4
* biology/jellyfish: Update to version 2.2.6jrm2016-12-203-54/+56
* - Update *_DEPENDS: Bio::Coordinate family has been moved from biology/p5-Bio...sunpoet2016-12-191-2/+4
* - Add p5-Bio-Coordinate 1.007001sunpoet2016-12-195-0/+58
* - Update to 1.007000sunpoet2016-12-194-20/+29
* - Update to 1.007001sunpoet2016-12-196-383/+180
* - Update to 2.5.0wen2016-12-195-68/+190
* - Update to 2.40sunpoet2016-12-183-10/+22
* - Move biology/p5-bioperl-run to biology/p5-BioPerl-Runsunpoet2016-12-186-8/+10
* - Add LICENSE_FILEsunpoet2016-12-181-2/+5
* - Add LICENSEsunpoet2016-12-181-4/+8
* - Add LICENSEsunpoet2016-12-181-1/+7
* - Move biology/p5-bioperl to biology/p5-BioPerlsunpoet2016-12-187-9/+7
* biology/diamond: Update to version 0.8.29jrm2016-12-182-4/+4
* biology/protomol: Support build with C++11 (taken from dports)marino2016-12-185-0/+48
* biology/blat: Fix build on DF (taken from dports)marino2016-12-181-0/+14
* biology/lamarc: Fix build on DF (taken from dports)marino2016-12-181-0/+11
* biology/chemeq: fix build on GCC (taken from dports)marino2016-12-181-0/+11
* Remove libintl.so.9 compatibility link that was added in r374303 totijl2016-12-093-2/+3
* Remove libjpeg.so.11 compatibility link that was added in r374303 totijl2016-12-091-0/+1
* Bump PORTREVISIONS for ports depending on the canonical version of GCC andgerald2016-12-077-5/+7
* biology/molden: distfile was updated in xwin.cpi2016-12-042-4/+4
* Do not use post-stage. Use post-install instead.mat2016-12-021-1/+1
* biology/njplot: Add site in MASTER_SITES because package builders arejrm2016-11-281-2/+4
* biology/diamond: Update to version 0.8.28jrm2016-11-282-5/+6
* Fixup USE_GITHUB usage.mat2016-11-262-3/+3
* Replace USE_GCC=4.9+ by USE_GCC=yes, now that lang/gcc and the defaultgerald2016-11-261-1/+1
* devel/boost-*: update to 1.62.0jbeich2016-11-231-0/+1
* - Remove unnecessary USES=shebangfixsunpoet2016-11-211-4/+8
* Bump PORTREVISIONS for ports depending on the canonical version of GCC andgerald2016-11-205-2/+5
* biology/avida: Fix ncurses from ports supportmarino2016-11-191-1/+3
* biology/njplot: Revive and update to version 2.4jrm2016-11-165-0/+109
* Mark various leaf ports broken on aarch64, and, where appropriate, otherlinimon2016-11-114-2/+8
* Attempt to fix build on non-x86 archs.linimon2016-11-111-3/+5
* biology/seqtools: update 4.43.0 -> 4.44.1pi2016-11-113-4/+14
* biology/molden: add missing LICENSE_NAMEpi2016-11-101-1/+2
* biology/molden: fix distinfo, set LICENSEpi2016-11-102-7/+11
* The 64-bit arm arch is actually spelled 'aarch64', not 'arm64'.linimon2016-11-093-3/+3
* Mark as broken on arm64.linimon2016-11-081-0/+2
* Mark broken on all tier-2 archs.linimon2016-11-081-0/+3
* Mark broken on the rest of the tier-2 archs: invokes x86 asm.linimon2016-11-081-1/+4
* biology/diamond: Update to version 0.8.26jrm2016-11-062-4/+4
* Cleanup no longer needed CHMOD usage after r424898.mat2016-11-034-12/+5
* - Mark it BROKENwen2016-10-28