| Commit message (Expand) | Author | Age | Files | Lines |
* | biology/diamond: Update to version 0.9.17 | jrm | 2018-02-04 | 2 | -4/+4 |
* | - Update to 3.3.20180129 | wen | 2018-02-04 | 2 | -5/+4 |
* | Multiple ports: | jwb | 2018-02-04 | 16 | -29/+16 |
* | devel/boost-*: update to 1.66.0 | jbeich | 2018-02-04 | 2 | -1/+2 |
* | - Convert to option helper install target (add OPTIONS_DEFINE=DOCS | danfe | 2018-02-04 | 1 | -2/+4 |
* | Update Qt5 ports to 5.9.3. | rakuco | 2018-02-04 | 1 | -0/+10 |
* | biology/seaview: Update version 4.6.2=>4.6.3 | bofh | 2018-02-04 | 3 | -7/+8 |
* | New USES=eigen | tcberner | 2018-02-04 | 1 | -5/+2 |
* | - Update to 3.697 | wen | 2018-02-04 | 2 | -3/+4 |
* | - Update to 5.16.0 | wen | 2018-02-04 | 3 | -4/+9 |
* | biology/iqtree: Fix distinfo after upstream re-released v1.6.1 | jrm | 2018-02-04 | 2 | -3/+4 |
* | biology/iqtree: Update to version 1.6.1 | jrm | 2018-02-04 | 2 | -9/+8 |
* | Disable the extra flag "-march=native" on arm to fix builds. | linimon | 2018-02-04 | 1 | -3/+6 |
* | Update to 2.0.1 | sunpoet | 2018-02-04 | 3 | -5/+31 |
* | biology/canu: Replace += with = for depends | jwb | 2018-02-04 | 1 | -2/+2 |
* | - Fix build on 11+ | amdmi3 | 2018-02-04 | 2 | -4/+11 |
* | [new port] biology/canu: Single molecule sequence assembler | jwb | 2018-02-04 | 6 | -0/+167 |
* | Try to bring some consistency to ports that have x86-specific pieces. | linimon | 2018-02-04 | 2 | -12/+12 |
* | Switch from swig 2.0 to swig 3.0 | bapt | 2018-02-04 | 1 | -2/+4 |
* | Mark more recently failing ports broken on aarch64. | linimon | 2018-02-04 | 1 | -2/+3 |
* | Back out previous commits by jbeich demand. | linimon | 2018-02-04 | 2 | -10/+2 |
* | Bah. Remove spare line from cut-and-paste. | linimon | 2018-02-04 | 1 | -1/+0 |
* | Attempt to fix build on non-x86 archs. Untested, but does no harm | linimon | 2018-02-04 | 2 | -2/+11 |
* | biology/diamond: Update to version 0.9.14 | jrm | 2018-02-04 | 2 | -4/+4 |
* | biology/seqtools: re-try on powerpc* after r449590 | jbeich | 2018-02-04 | 1 | -2/+0 |
* | - Those ports fail to build with python3 | antoine | 2018-02-04 | 1 | -1/+1 |
* | Mark several ports newly broken on arm. | linimon | 2018-02-04 | 2 | -3/+9 |
* | biology/py-biom-format: Add required dependency on math/py-pandas and do | jrm | 2018-02-04 | 1 | -3/+7 |
* | [new port] biology/p5-TrimGalore: Wrapper around Cutadapt and FastQC for adap... | jwb | 2018-02-04 | 5 | -0/+47 |
* | These are also broken on aarch64 in the same way as armv6/7. | linimon | 2018-02-04 | 1 | -0/+1 |
* | Mark more ports broken that fail on both armv6 and armv7. | linimon | 2018-02-04 | 1 | -0/+3 |
* | Revert previous fat-fingered commit. These are the error messages from | linimon | 2018-02-04 | 1 | -2/+2 |
* | Update errror message on armvX. | linimon | 2018-02-04 | 1 | -2/+2 |
* | biology/fasttree: update to version 2.1.10 | jwb | 2018-02-04 | 4 | -19/+45 |
* | biology/py-macs2: Restrict to python 2.7. | jwb | 2018-02-04 | 1 | -2/+2 |
* | Add a USES=python:env, that will not add a dependency on Python. | mat | 2018-02-04 | 2 | -4/+2 |
* | Fix configure options for gnustep-make | theraven | 2018-02-04 | 1 | -1/+1 |
* | [new port] biology/py-macs2: Analysis of chromatin immunoprecipitation (ChIP)... | jwb | 2018-02-04 | 4 | -0/+41 |
* | [new port] biology/kallisto: Quantify abundances of transcripts from RNA-Seq ... | jwb | 2018-02-04 | 5 | -0/+91 |
* | Fix packaging with python3 | antoine | 2018-02-04 | 2 | -14/+14 |
* | [unbreak] biology/bwa: Remove old patch files | jwb | 2018-02-04 | 3 | -37/+0 |
* | [new port] biology/fastqc: Quality control tool for high throughput sequence ... | jwb | 2018-02-04 | 5 | -0/+260 |
* | biology/py-cutadapt: Remove MASTER_SITE_SUBDIR per mentor comment | jwb | 2018-02-04 | 1 | -1/+0 |
* | Convert Python ports to FLAVORS. | mat | 2018-02-04 | 9 | -17/+15 |
* | For ports that are marked BROKEN on armv6, and also fail to build on | linimon | 2018-02-04 | 5 | -0/+5 |
* | biology/bowtie2: Upgrade to 2.3.3.1 | jwb | 2018-02-04 | 5 | -50/+19 |
* | [new port] biology/py-cutadapt: Finds and removes adapter sequences, primers, po | jwb | 2018-02-04 | 5 | -0/+74 |
* | biology/bwa: Upgrade to 0.7.17 | jwb | 2018-02-04 | 2 | -5/+10 |
* | biology/vcftools: Upgrade to latest release 0.1.15 | jwb | 2018-02-04 | 2 | -4/+4 |
* | - Switch to options helpers | amdmi3 | 2018-02-04 | 1 | -1/+5 |
* | biology/diamond: Update to version 0.9.13 | jrm | 2018-02-04 | 2 | -4/+4 |
* | - Update to 3.1b2 | wen | 2018-02-04 | 5 | -39/+69 |
* | Fix the context of some patches so that they apply with stricter patch(1) | antoine | 2018-02-04 | 2 | -6/+6 |
* | biology/diamond: Update to version 0.9.12 | jrm | 2018-02-04 | 2 | -7/+5 |
* | Fix USE_GITHUB usage. | mat | 2018-02-04 | 2 | -5/+4 |
* | biology/py-pysam: Update to 0.13 | yuri | 2018-02-04 | 2 | -6/+8 |
* | biology/diamond: Update to 0.9.11 | jrm | 2018-02-04 | 3 | -10/+14 |
* | biology/molden: chase another intransparent upstream distfile upgrade. | jmd | 2018-02-04 | 2 | -4/+4 |
* | - Fix installing scripts and support binaries | wen | 2018-02-04 | 4 | -8/+39 |
* | Update biology/py-pysam to 0.12.0.1 | tcberner | 2018-02-04 | 2 | -4/+4 |
* | biology/htslib biology/bcftools biology/samtools: Update to 1.6 | pizzamig | 2018-02-04 | 25 | -897/+171 |
* | biology/iqtree: Add EXAMPLES option and fix mess with installation of | jrm | 2018-02-04 | 1 | -1/+13 |
* | New port, biology/iqtree: Efficient phylogenomic software | jrm | 2018-02-04 | 4 | -0/+43 |
* | Mark as broken ports with no public distfiles | bapt | 2018-02-04 | 6 | -1/+10 |
* | Remove dead master sites | bapt | 2018-02-04 | 2 | -2/+3 |
* | biology/molden: unbreak by chasing latest intransparent distfile update. | jmd | 2018-02-04 | 2 | -4/+4 |
* | devel/boost-*: update to 1.65.1 | jbeich | 2018-02-04 | 1 | -1/+1 |
* | devel/boost-*: enable C++11 features | jbeich | 2018-02-04 | 1 | -1/+1 |
* | biology/ssaha: unbreak with gcc7 | jbeich | 2018-02-04 | 1 | -0/+9 |
* | Remove USES=execinfo. | mat | 2018-02-04 | 2 | -2/+2 |
* | Update tbb to 2018 and bump dependent ports' revisions | martymac | 2018-02-04 | 1 | -1/+1 |
* | Update to 1.007002 | sunpoet | 2018-02-04 | 3 | -23/+5 |
* | Add p5-Bio-FeatureIO 1.6.905 | sunpoet | 2018-02-04 | 5 | -0/+67 |
* | Fix license information for portgs that use "the same license as Perl". | mat | 2018-02-04 | 10 | -10/+10 |
* | - Update to 1.007002 | wen | 2018-02-04 | 3 | -15/+4 |
* | Bump PORTREVISION for ports depending on the canonical version of GCC | gerald | 2018-02-04 | 15 | -15/+15 |
* | Update to 3.3.20170530 | sunpoet | 2018-02-04 | 2 | -3/+5 |
* | Remove expired ports: | rene | 2018-02-04 | 5 | -87/+0 |
* | Update GNUstep core libraries. | theraven | 2018-02-04 | 1 | -1/+1 |
* | - update to 1.70 | wen | 2018-02-04 | 2 | -4/+4 |
* | biology/diamond: Update to version 0.9.10 | jrm | 2018-02-04 | 2 | -4/+4 |
* | - Update to 1.53 | wen | 2018-02-04 | 2 | -4/+4 |
* | Deprecate ports BROKEN for more than 6 months | antoine | 2017-07-22 | 1 | -0/+2 |
* | biology/seaview: Update version 4.6.1=>4.6.2 | bofh | 2017-07-22 | 2 | -4/+4 |
* | Chase next distfile update. Upstream contacted whether we would be allowed to... | jmd | 2017-07-14 | 2 | -4/+4 |
* | biology/molden: Unbreak by chasing their latest opaque update to the distribu... | jmd | 2017-07-12 | 2 | -7/+5 |
* | Update math/gsl to 2.4 | tcberner | 2017-07-04 | 1 | -1/+1 |
* | biology/diamond: Update to version 0.9.9 | jrm | 2017-07-04 | 2 | -4/+4 |
* | Update devel/readline to 7.0 patch 3 | sunpoet | 2017-06-27 | 1 | -1/+1 |
* | Begin deorbit burn of ia64. We have not attempted to build packages for | linimon | 2017-06-25 | 1 | -1/+1 |
* | Mark BROKEN. | mat | 2017-06-22 | 1 | -0/+2 |
* | biology/diamond: Update to version 0.9.8 | jrm | 2017-06-16 | 2 | -4/+4 |
* | - Update WWW | amdmi3 | 2017-06-10 | 2 | -8/+7 |
* | - Update to 0.11.2.2 | wen | 2017-06-10 | 2 | -4/+4 |
* | Previous commit unbroke the port. | linimon | 2017-06-03 | 1 | -2/+0 |
* | biology/diamond: Update to version 0.9.4 | jrm | 2017-06-03 | 2 | -4/+4 |
* | Remove outdated PERL_LEVEL check | sunpoet | 2017-06-02 | 1 | -8/+2 |
* | Remove outdated PERL_LEVEL check | sunpoet | 2017-06-02 | 1 | -8/+2 |
* | Update WWW | sunpoet | 2017-05-30 | 1 | -1/+1 |
* | biology/diamond: Update to version 0.9.3 | jrm | 2017-05-29 | 2 | -4/+4 |
* | Mark some ports failing on armv6, for errors classified as "clang". | linimon | 2017-05-27 | 1 | -0/+2 |
* | Mark some ports failing on armv6, for errors classified as "???". | linimon | 2017-05-27 | 2 | -3/+6 |
* | biology/molden: Chase recent upstream change of molden distfile. | jmd | 2017-05-24 | 2 | -4/+4 |
* | - Update to 0.11.2.1 | joneum | 2017-05-24 | 2 | -5/+5 |
* | biology/diamond: Update to version 0.9.1 | jrm | 2017-05-23 | 2 | -6/+6 |
* | Revision bump of all ports with USE_GL after consolidation of mesa-libs | rezny | 2017-05-23 | 3 | -3/+3 |
* | It is possible that r441426 will fix the build problem on armv6. Give | linimon | 2017-05-22 | 1 | -1/+0 |
* | Mark some ports failing on power64. In cases where the error message | linimon | 2017-05-22 | 1 | -0/+2 |
* | Mark BROKEN: checksum and size mismatch | antoine | 2017-05-20 | 1 | -0/+2 |
* | - Update to 5.15.0 | wen | 2017-05-18 | 3 | -3/+14 |
* | Mark some ports failing on power64. In cases where the error message | linimon | 2017-05-13 | 5 | -3/+6 |
* | - Update to 0.11.1 | miwi | 2017-05-08 | 2 | -4/+4 |
* | - Update to 1.5.1 | miwi | 2017-05-07 | 2 | -6/+4 |
* | bx-python is a python library and associated set of scripts to allow for rapid | miwi | 2017-05-06 |