math/R: Update to version 3.4.2

Also
 - Build Fortran code with flang by default on amd64.
 - Remove LTO option.  Upstream does not turn it on by default, it has
   caused problems with each GCC upgrade, and any benefit is unclear.
 - Do not specify USES=compiler:openmp since that just forces GCC.

3 files changed, 19 insertions, 25 deletions

diff --git a/math/R/Makefile b/math/R/Makefile
index 545b68441660..3103c6c93f4d 100644
--- a/math/R/Makefile
+++ b/math/R/Makefile
@@ -2,8 +2,7 @@
 # $FreeBSD$
 
 PORTNAME=		R
-DISTVERSION=		3.4.1
-PORTREVISION=		8
+DISTVERSION=		3.4.2
 CATEGORIES=		math lang
 MASTER_SITES=		CRAN/src/base/R-${PORTVERSION:C|\..*||}
 
@@ -29,9 +28,8 @@ USES=			gmake iconv libtool localbase \
 USE_PERL5=		build
 USE_LDCONFIG=		${PREFIX}/lib/R/lib
 
-OPTIONS_DEFINE=		ICU INFO LDOUBLE LETTER LIBR MEMPROF NLS RPROF X11
-OPTIONS_GROUP=		NEEDGCC NEEDX11
-OPTIONS_GROUP_NEEDGCC=	LTO OPENMP
+OPTIONS_DEFINE=		ICU INFO LDOUBLE LETTER LIBR MEMPROF NLS OPENMP RPROF X11
+OPTIONS_GROUP=		NEEDX11
 OPTIONS_GROUP_NEEDX11=	GHOSTSCRIPT JPEG CAIROPANGO PNG TCLTK TEXDOCS TIFF
 OPTIONS_SINGLE=		BLAS FORTRAN
 OPTIONS_SINGLE_BLAS=	ATLAS OPENBLAS NETLIB RBLAS
@@ -43,16 +41,15 @@ OPTIONS_SINGLE_FORTRAN_amd64=	GFORTRAN FLANG
 OPTIONS_SUB=		YES
 
 ATLAS_DESC=		ATLAS BLAS implementation
-FLANG_DESC=		Experimental Fortran support via flang
+FLANG_DESC=		Build Fortran source with flang
 GHOSTSCRIPT_DESC=	Graphics device for bitmap files via Ghostscript
 CAIROPANGO_DESC=	Cairo graphics device and Pango multi-language text
-GFORTRAN_DESC=		Fortran support via gfortran
+GFORTRAN_DESC=		Build Fortran source with gfortran
 INFO_DESC=		GNU info manuals
 JPEG_DESC=		JPEG graphics device
 LDOUBLE_DESC=		Long double data type
 LETTER_DESC=		US letter paper
 LIBR_DESC=		Shared R library
-LTO_DESC=		Use Link Time Optimization
 MEMPROF_DESC=		Memory profiling via Rprofmem() and tracemem()
 NEEDGCC_DESC=		Require GCC
 NEEDX11_DESC=		Require X11
@@ -64,8 +61,11 @@ RPROF_DESC=		R profiling via Rprof()
 TEXDOCS_DESC=		Build/Install TeX-dependent documentation files
 X11_DESC=		X11 graphics device
 
-OPTIONS_DEFAULT=	CAIROPANGO GFORTRAN GHOSTSCRIPT ICU INFO JPEG LDOUBLE \
-			LIBR PNG RBLAS RPROF TCLTK TIFF X11
+OPTIONS_DEFAULT=	CAIROPANGO GHOSTSCRIPT ICU INFO JPEG LDOUBLE LIBR PNG \
+			RBLAS RPROF TCLTK TIFF X11
+OPTIONS_DEFAULT_aarch64=GFORTRAN
+OPTIONS_DEFAULT_amd64=	FLANG
+OPTIONS_DEFAULT_i386=	GFORTRAN
 
 ATLAS_USES=		blaslapack:atlas
 ATLAS_CONFIGURE_ON=	--disable-BLAS-shlib
@@ -76,6 +76,7 @@ CAIROPANGO_CONFIGURE_WITH=cairo
 CAIROPANGO_USES=	gettext jpeg pkgconfig
 CAIROPANGO_USE=		GNOME=pango,cairo
 FLANG_USE=		binutils
+#FLANG_USES=		fortran:flang
 FLANG_PREVENTS=		ATLAS OPENBLAS NETLIB
 FLANG_BUILD_DEPENDS=	flang:devel/flang
 FLANG_RUN_DEPENDS=	flang:devel/flang
@@ -83,6 +84,7 @@ FLANG_VARS=		F77=flang FC=flang
 FLANG_LDFLAGS=		-L${LOCALBASE}/flang/lib -lflang -lexecinfo
 FLANG_CONFIGURE_ENV=	F77="${F77}" FC="${FC}" FFLAGS="${FFLAGS}"
 FLANG_MAKE_ENV=		F77="${F77}" FC="${FC}" FFLAGS="${FFLAGS}"
+#GFORTRAN_USE=		gcc=yes
 GFORTRAN_USES=		fortran
 GFORTRAN_RUN_DEPENDS=	wget:ftp/wget
 GHOSTSCRIPT_IMPLIES=	X11
@@ -99,13 +101,6 @@ LDOUBLE_CONFIGURE_ENABLE=long-double
 LETTER_CONFIGURE_ENV=	R_PAPERSIZE=letter
 LIBR_CONFIGURE_ENABLE=	R-shlib
 LIBR_EXTRA_PATCHES=	${PATCHDIR}/extra-patch-src_main_Makefile.in
-LTO_CONFIGURE_ENABLE=	lto
-LTO_CONFIGURE_ENV=	AR="${LOCALBASE}/bin/gcc-ar${GCC_DEFAULT:S/.//g}" \
-			RANLIB="${LOCALBASE}/bin/gcc-ranlib${GCC_DEFAULT:S/.//g}"
-LTO_PREVENTS=		FLANG
-LTO_USE=		GCC=yes
-LTO_VARS=		BINUTILS="ADDR2LINE AS CPPFILT GPROF LD NM OBJCOPY \
-			OBJDUMP READELF SIZE STRINGS"
 MEMPROF_CONFIGURE_ENABLE=memory-profiling
 NETLIB_USES=		blaslapack:netlib
 NETLIB_CONFIGURE_ON=	--disable-BLAS-shlib
@@ -115,7 +110,6 @@ OPENBLAS_USES=		blaslapack:openblas
 OPENBLAS_CONFIGURE_ON=	--disable-BLAS-shlib
 OPENMP_CONFIGURE_ENABLE=openmp
 OPENMP_LIB_DEPENDS=	libomp.so:devel/openmp
-OPENMP_USES=		compiler:openmp
 PNG_IMPLIES=		X11
 PNG_LIB_DEPENDS=	libpng.so:graphics/png
 PNG_CONFIGURE_WITH=	libpng
diff --git a/math/R/distinfo b/math/R/distinfo
index bca1071b9258..b1424a0c3b05 100644
--- a/math/R/distinfo
+++ b/math/R/distinfo
@@ -1,3 +1,3 @@
-TIMESTAMP = 1498946951
-SHA256 (R-3.4.1.tar.gz) = 02b1135d15ea969a3582caeb95594a05e830a6debcdb5b85ed2d5836a6a3fc78
-SIZE (R-3.4.1.tar.gz) = 30200109
+TIMESTAMP = 1506599196
+SHA256 (R-3.4.2.tar.gz) = 971e30c2436cf645f58552905105d75788bd9733bddbcb7c4fbff4c1a6d80c64
+SIZE (R-3.4.2.tar.gz) = 30255544
diff --git a/math/R/pkg-message b/math/R/pkg-message
index 13a32a033190..9ac5539dd34b 100644
--- a/math/R/pkg-message
+++ b/math/R/pkg-message
@@ -1,14 +1,14 @@
 
 ========================================================================
 On 11.1 and later, there is a problem downloading R packages when
-gfortran is chosen as the fortran compiler.
+R is built with gfortran.
 
 Use either of these workarounds until a permanent solution is found.
 
-1. If you are on an amd64 system, you can use flang as the fortran
-   compiler.
+1. If you are on an amd64 system, use flang to build R.  R is now built
+   by default using flang on amd64.
 
-2. If you choose gfortran as the fortran compiler, you can add
+2. If you use gfortran to build R, add
 
    options(download.file.method="wget")