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# $FreeBSD$

PORTNAME=   TrimGalore
DISTVERSION=    0.4.5
CATEGORIES= biology perl5
PKGNAMEPREFIX=  p5-

MAINTAINER= jwb@FreeBSD.org
COMMENT=    Wrapper around Cutadapt and FastQC for adapter and quality trimming

LICENSE=    GPLv3
LICENSE_FILE=   ${WRKSRC}/LICENSE

RUN_DEPENDS=    ${PYTHON_PKGNAMEPREFIX}cutadapt>0:biology/py-cutadapt@${PY_FLAVOR} \
        fastqc>0:biology/fastqc

NO_ARCH=    yes
NO_BUILD=   yes

USES=       perl5 python:env shebangfix
SHEBANG_FILES=  trim_galore
USE_PERL5=  run

USE_GITHUB= yes
GH_ACCOUNT= FelixKrueger

do-install:
    ${INSTALL_SCRIPT} ${WRKSRC}/trim_galore ${STAGEDIR}${PREFIX}/bin
    cd ${WRKSRC} && ${COPYTREE_SHARE} test_files ${STAGEDIR}${DATADIR}

.include <bsd.port.mk>