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authorknu <knu@FreeBSD.org>2003-08-23 06:53:54 +0800
committerknu <knu@FreeBSD.org>2003-08-23 06:53:54 +0800
commit705758777f65c75bf4eff92416d9650aead430b6 (patch)
tree2874ca757c4d541fff44a39977b47d1d1d1892ad /biology/ruby-bio
parent333e9232956ddb6c08e9a5f0543ee82b67f7df66 (diff)
downloadfreebsd-ports-gnome-705758777f65c75bf4eff92416d9650aead430b6.tar.gz
freebsd-ports-gnome-705758777f65c75bf4eff92416d9650aead430b6.tar.zst
freebsd-ports-gnome-705758777f65c75bf4eff92416d9650aead430b6.zip
Update to 0.5.2.
Diffstat (limited to 'biology/ruby-bio')
-rw-r--r--biology/ruby-bio/Makefile2
-rw-r--r--biology/ruby-bio/distinfo2
-rw-r--r--biology/ruby-bio/pkg-plist11
3 files changed, 13 insertions, 2 deletions
diff --git a/biology/ruby-bio/Makefile b/biology/ruby-bio/Makefile
index b6d25a67c4fe..0363de420f24 100644
--- a/biology/ruby-bio/Makefile
+++ b/biology/ruby-bio/Makefile
@@ -6,7 +6,7 @@
#
PORTNAME= bio
-PORTVERSION= 0.5.1
+PORTVERSION= 0.5.2
CATEGORIES= biology ruby
MASTER_SITES= ftp://ftp.bioruby.org/bioruby/
MASTER_SITE_SUBDIR= knu
diff --git a/biology/ruby-bio/distinfo b/biology/ruby-bio/distinfo
index c2dbe715f3d6..11d62b73eb77 100644
--- a/biology/ruby-bio/distinfo
+++ b/biology/ruby-bio/distinfo
@@ -1 +1 @@
-MD5 (ruby/bioruby-0.5.1.tar.gz) = 77bfd08d3bf01e1a060f6826d08ba258
+MD5 (ruby/bioruby-0.5.2.tar.gz) = 69d15dc333713ebd89ac645dd5ca4578
diff --git a/biology/ruby-bio/pkg-plist b/biology/ruby-bio/pkg-plist
index 38c98bc22f06..2604e94d5bbd 100644
--- a/biology/ruby-bio/pkg-plist
+++ b/biology/ruby-bio/pkg-plist
@@ -6,11 +6,17 @@ etc/bioinformatics/seqdatabase.ini.sample
@exec [ ! -f %B/etc/bioinformatics/seqdatabase.ini ] && cp %B/%f %B/etc/bioinformatics/seqdatabase.ini
@dirrm etc/bioinformatics
%%RUBY_SITELIBDIR%%/bio.rb
+%%RUBY_SITELIBDIR%%/bio/alignment.rb
+%%RUBY_SITELIBDIR%%/bio/appl/alignfactory.rb
%%RUBY_SITELIBDIR%%/bio/appl/blast.rb
+%%RUBY_SITELIBDIR%%/bio/appl/blast/format0.rb
%%RUBY_SITELIBDIR%%/bio/appl/blast/format8.rb
%%RUBY_SITELIBDIR%%/bio/appl/blast/report.rb
%%RUBY_SITELIBDIR%%/bio/appl/blast/rexml.rb
+%%RUBY_SITELIBDIR%%/bio/appl/blast/wublast.rb
%%RUBY_SITELIBDIR%%/bio/appl/blast/xmlparser.rb
+%%RUBY_SITELIBDIR%%/bio/appl/clustalw.rb
+%%RUBY_SITELIBDIR%%/bio/appl/clustalw/report.rb
%%RUBY_SITELIBDIR%%/bio/appl/emboss.rb
%%RUBY_SITELIBDIR%%/bio/appl/fasta.rb
%%RUBY_SITELIBDIR%%/bio/appl/fasta/format10.rb
@@ -18,6 +24,8 @@ etc/bioinformatics/seqdatabase.ini.sample
%%RUBY_SITELIBDIR%%/bio/appl/genscan/report.rb
%%RUBY_SITELIBDIR%%/bio/appl/hmmer.rb
%%RUBY_SITELIBDIR%%/bio/appl/hmmer/report.rb
+%%RUBY_SITELIBDIR%%/bio/appl/mafft.rb
+%%RUBY_SITELIBDIR%%/bio/appl/mafft/report.rb
%%RUBY_SITELIBDIR%%/bio/appl/psort.rb
%%RUBY_SITELIBDIR%%/bio/appl/psort/report.rb
%%RUBY_SITELIBDIR%%/bio/appl/sosui/report.rb
@@ -86,9 +94,11 @@ etc/bioinformatics/seqdatabase.ini.sample
@dirrm %%RUBY_SITELIBDIR%%/bio/appl/targetp
@dirrm %%RUBY_SITELIBDIR%%/bio/appl/sosui
@dirrm %%RUBY_SITELIBDIR%%/bio/appl/psort
+@dirrm %%RUBY_SITELIBDIR%%/bio/appl/mafft
@dirrm %%RUBY_SITELIBDIR%%/bio/appl/hmmer
@dirrm %%RUBY_SITELIBDIR%%/bio/appl/genscan
@dirrm %%RUBY_SITELIBDIR%%/bio/appl/fasta
+@dirrm %%RUBY_SITELIBDIR%%/bio/appl/clustalw
@dirrm %%RUBY_SITELIBDIR%%/bio/appl/blast
@dirrm %%RUBY_SITELIBDIR%%/bio/appl
@dirrm %%RUBY_SITELIBDIR%%/bio
@@ -117,6 +127,7 @@ etc/bioinformatics/seqdatabase.ini.sample
%%PORTDOCS%%%%RUBY_MODDOCDIR%%/README
%%PORTDOCS%%%%RUBY_MODDOCDIR%%/ja/BioRuby.rd.ja
%%PORTDOCS%%%%RUBY_MODDOCDIR%%/ja/Design.rd.ja
+%%PORTDOCS%%%%RUBY_MODDOCDIR%%/ja/KEGG_API.rd.ja
%%PORTDOCS%%%%RUBY_MODDOCDIR%%/ja/TODO.rd.ja
%%PORTDOCS%%%%RUBY_MODDOCDIR%%/ja/Tutorial.rd.ja
%%PORTDOCS%%@dirrm %%RUBY_MODDOCDIR%%/ja