biology/seaview: Update version 4.7=>5.0

Relnotes:http://doua.prabi.fr/software/seaview

5 files changed, 4 insertions, 69 deletions

diff --git a/biology/seaview/Makefile b/biology/seaview/Makefile
index 5b0ed93c8059..6716a04d408a 100644
--- a/biology/seaview/Makefile
+++ b/biology/seaview/Makefile
@@ -2,7 +2,7 @@
 # $FreeBSD$
 
 PORTNAME=	seaview
-PORTVERSION=	4.7
+PORTVERSION=	5.0
 PORTEPOCH=	1
 CATEGORIES=	biology
 MASTER_SITES=	ftp://pbil.univ-lyon1.fr/pub/mol_phylogeny/seaview/archive/
diff --git a/biology/seaview/distinfo b/biology/seaview/distinfo
index 781b8adf456c..3699c333cd9c 100644
--- a/biology/seaview/distinfo
+++ b/biology/seaview/distinfo
@@ -1,3 +1,3 @@
-TIMESTAMP = 1532115593
-SHA256 (seaview_4.7.tar.gz) = 368985b97bb191f761cde1dae052c5bad679b2962ad9e818873f02cbdac11e3a
-SIZE (seaview_4.7.tar.gz) = 443643
+TIMESTAMP = 1580577008
+SHA256 (seaview_5.0.tar.gz) = ec4804dd25d27c03bf7ef6bd766d49899abd92107f779e5b5037a45a8bc3f23f
+SIZE (seaview_5.0.tar.gz) = 473569
diff --git a/biology/seaview/files/patch-seaview.cxx b/biology/seaview/files/patch-seaview.cxx
deleted file mode 100644
index 65b5b321c33d..000000000000
--- a/biology/seaview/files/patch-seaview.cxx
+++ /dev/null
@@ -1,34 +0,0 @@
---- seaview.cxx.orig	2018-08-25 03:49:10 UTC
-+++ seaview.cxx
-@@ -3349,7 +3349,7 @@ else if(reponse == PRINTOUT && view->tot_seqs > 0) {
- 	if(p != NULL) *p = 0;
- 	if(printout_black == TEXT_ONLY) strcat(suggested, ".txt");
- 	else {
--		strcat(suggested, "."PDF_OR_PS_EXT);
-+		strcat(suggested, "." PDF_OR_PS_EXT);
- 		}
- if( view->alt_col_rank != NULL ) {
- 		for(anerr = 0; anerr < view->tot_seqs; anerr++)
-@@ -3459,7 +3459,7 @@ fl_font(FL_HELVETICA, FL_NORMAL_SIZE);
- 
- pdf_form = new Fl_Window(415, 90);
- pdf_form->box(FL_FLAT_BOX);
--pdf_form->label("Set "PDF_OR_PS" output options");
-+pdf_form->label("Set " PDF_OR_PS " output options");
- 
- x = 5 + (int)fl_width("block size:"); y = 5; w = 50; h = 25;
- sizeinput = new Fl_Input(x, y, w, h, "font size:");
-@@ -5048,10 +5048,10 @@ menus->spacing(2);
-     {"Save prot alignmt", 0,file_menu_callback, 0, FL_MENU_INACTIVE},
-     {"Save bootstrap replicates", 0,file_menu_callback, 0, FL_MENU_INACTIVE | FL_MENU_DIVIDER},
- #if !defined(__APPLE__)
--    {"Prepare "PDF_OR_PS"", 0, file_menu_callback, 0, 0},
--    {""PDF_OR_PS" options...", 0, file_menu_callback, 0, FL_MENU_DIVIDER},
-+    {"Prepare " PDF_OR_PS "", 0, file_menu_callback, 0, 0},
-+    {"" PDF_OR_PS " options...", 0, file_menu_callback, 0, FL_MENU_DIVIDER},
- #else
--    {"Prepare "PDF_OR_PS"", 0, file_menu_callback, 0, FL_MENU_DIVIDER},
-+    {"Prepare " PDF_OR_PS "", 0, file_menu_callback, 0, FL_MENU_DIVIDER},
- #endif
-     {"Concatenate", 0,file_menu_callback, 0, FL_MENU_DIVIDER},
-     {"New window", FL_COMMAND | 'n', file_menu_callback, 0, 0},
diff --git a/biology/seaview/files/patch-treedraw.cxx b/biology/seaview/files/patch-treedraw.cxx
deleted file mode 100644
index c7c271bc55a5..000000000000
--- a/biology/seaview/files/patch-treedraw.cxx
+++ /dev/null
@@ -1,11 +0,0 @@
---- treedraw.cxx.orig	2018-08-25 03:51:23 UTC
-+++ treedraw.cxx
-@@ -322,7 +322,7 @@ Fl_Window *treedraw(char *trees, SEA_VIEW *view, const
-     {"Save all trees", 0, file_callback, NULL, 0},
-     {"Save patristic distances", 0, patristic_callback, NULL, FL_MENU_DIVIDER},
-     {"Print", FL_COMMAND | 'p', file_callback, NULL, 0},
--    {"Save as "PDF_OR_PS"", 0, file_callback, NULL, 0},
-+    {"Save as " PDF_OR_PS "", 0, file_callback, NULL, 0},
-     {"A4", 0, file_callback, NULL, FL_MENU_RADIO | 0},
-     {"Letter", 0, file_callback, NULL, FL_MENU_RADIO | 0},
-     {"Landscape", 0, file_callback, NULL, FL_MENU_TOGGLE},
diff --git a/biology/seaview/files/patch-xfmatpt.cxx b/biology/seaview/files/patch-xfmatpt.cxx
deleted file mode 100644
index e4197bcb656e..000000000000
--- a/biology/seaview/files/patch-xfmatpt.cxx
+++ /dev/null
@@ -1,20 +0,0 @@
---- xfmatpt.cxx.orig	2018-08-25 03:50:10 UTC
-+++ xfmatpt.cxx
-@@ -205,7 +205,7 @@ fin += width + 2;
- compute->callback(compute_proc, fdui);
- fdui->compute_butt = compute;
- 
--Fl_Widget *postscript = cre_button(fin, curr_y, &width, but_height, fontsize, "Write "PDF_OR_PS);
-+Fl_Widget *postscript = cre_button(fin, curr_y, &width, but_height, fontsize, "Write " PDF_OR_PS);
- fin += width;
- postscript->callback(plot_button_proc, fdui);
- 
-@@ -870,7 +870,7 @@ if (setjmp(*jbuf) == 0) {
- #ifndef MICRO
-   matpt->form->hide(); Fl::flush(); // because of strange bug on 32-bit Linux only
- #endif
--  fl_message("Dot plot is now in file\n%s\nin "PDF_OR_PS" format", surface->outfname());
-+  fl_message("Dot plot is now in file\n%s\nin " PDF_OR_PS " format", surface->outfname());
-   delete surface;
- #ifndef MICRO
-   matpt->form->show(); Fl::flush();