- Update MASTER_SITES and WWW: line

- Support CC/CFLAGS properly
- Strip binary

PR:		123866
Submitted by:	Ports Fury

1 files changed, 23 insertions, 3 deletions

diff --git a/biology/tRNAscan-SE/Makefile b/biology/tRNAscan-SE/Makefile
index 1ffeebff9282..da7e62619150 100644
--- a/biology/tRNAscan-SE/Makefile
+++ b/biology/tRNAscan-SE/Makefile
@@ -7,22 +7,42 @@
 
 PORTNAME=	tRNAscan-SE
 PORTVERSION=	1.23
+PORTREVISION=	1
 CATEGORIES=	biology
-MASTER_SITES=	ftp://ftp.genetics.wustl.edu/pub/eddy/software/
+MASTER_SITES=	ftp://selab.janelia.org/pub/software/tRNAscan-SE/
 EXTRACT_SUFX=	.tar.Z
 
 MAINTAINER=	ports@FreeBSD.org
 COMMENT=	An improved tool for transfer RNA detection
 
+USE_PERL5=	yes
+MAKE_ARGS=	BINDIR="${PREFIX}/bin" \
+		LIBDIR="${DATADIR}" \
+		CC="${CC}" \
+		CFLAGS="${CFLAGS}"
+
 MAN1=		tRNAscan-SE.1
 
-USE_PERL5=	yes
+post-patch:
+	@${REINPLACE_CMD} -e 's|tRNAscanSE setpaths|tRNAscanSE|g ; \
+		 s|if tRNAscan-SE|if ./tRNAscan-SE|g' ${WRKSRC}/Makefile
+
+do-install:
+.for f in covels-SE coves-SE eufindtRNA trnascan-1.4
+	${INSTALL_PROGRAM} ${WRKSRC}/${f} ${PREFIX}/bin
+.endfor
+	${INSTALL_SCRIPT} ${WRKSRC}/tRNAscan-SE ${PREFIX}/bin
+	${INSTALL_MAN} ${WRKSRC}/tRNAscan-SE.man ${MANPREFIX}/man/man1/tRNAscan-SE.1
+	@${MKDIR} ${DATADIR}
+.for f in TPCsignal Dsignal *.cm gcode.*
+	${INSTALL_DATA} ${WRKSRC}/${f} ${DATADIR}
+.endfor
 
 #
 # have to install before testing as path to data files is hardcoded
 #
 post-install:
-		@ cd ${WRKSRC} && $(MAKE) testrun
+	@ cd ${WRKSRC} && $(MAKE) testrun
 .if !defined(NOPORTDOCS)
 	@${MKDIR} ${DOCSDIR}
 	${INSTALL_DATA} ${WRKSRC}/Manual.ps ${DOCSDIR}