add libgenome 0.5.0

Toolkit for developing bioinformatic related software in C++

6 files changed, 381 insertions, 0 deletions

diff --git a/biology/Makefile b/biology/Makefile
index 5be076006729..88c38ca56a43 100644
--- a/biology/Makefile
+++ b/biology/Makefile
@@ -24,6 +24,7 @@
     SUBDIR += hmmer
     SUBDIR += kinemage
     SUBDIR += lamarc
+    SUBDIR += libgenome
     SUBDIR += migrate
     SUBDIR += molden
     SUBDIR += mopac
diff --git a/biology/libgenome/Makefile b/biology/libgenome/Makefile
new file mode 100644
index 000000000000..3286693eb207
--- /dev/null
+++ b/biology/libgenome/Makefile
@@ -0,0 +1,26 @@
+# ex:ts=8
+# Ports collection makefile for:	libgenome
+# Date created:			Jul 30, 2002
+# Whom:				ijliao
+#
+# $FreeBSD$
+#
+
+PORTNAME=	libgenome
+PORTVERSION=	0.5.0
+CATEGORIES=	biology
+MASTER_SITES=	http://www.libgenome.org/releases/
+DISTNAME=	libGenome-${PORTVERSION}
+
+MAINTAINER=	ports@FreeBSD.org
+
+USE_LIBTOOL=	yes
+INSTALLS_SHLIB=	yes
+
+.if !defined(NOPORTDOCS)
+post-install:
+	@${MKDIR} ${DOCSDIR}
+	${CP} -R ${WRKSRC}/doc/html/* ${DOCSDIR}
+.endif
+
+.include <bsd.port.mk>
diff --git a/biology/libgenome/distinfo b/biology/libgenome/distinfo
new file mode 100644
index 000000000000..b5a1be9e6724
--- /dev/null
+++ b/biology/libgenome/distinfo
@@ -0,0 +1 @@
+MD5 (libGenome-0.5.0.tar.gz) = dc4351115328a4d10fb52850ee6675d1
diff --git a/biology/libgenome/pkg-comment b/biology/libgenome/pkg-comment
new file mode 100644
index 000000000000..86930ba80fb8
--- /dev/null
+++ b/biology/libgenome/pkg-comment
@@ -0,0 +1 @@
+Toolkit for developing bioinformatic related software in C++
diff --git a/biology/libgenome/pkg-descr b/biology/libgenome/pkg-descr
new file mode 100644
index 000000000000..5adbdf562353
--- /dev/null
+++ b/biology/libgenome/pkg-descr
@@ -0,0 +1,12 @@
+libGenome is a freely available toolkit for developing bioinformatic related
+software in C++. It is intended to take the hassle out of performing common
+tasks on genetic sequence and annotation data.
+
+Among other things, libGenome can help you:
+   - Read and write Multi-FastA format files
+   - Read and write GenBank flat file database entries
+   - Append, chop, truncate, reverse, complement, translate, and otherwise
+     mangle sequence data
+   - Access annotation in GenBank flat files
+
+WWW: http://www.libgenome.org/
diff --git a/biology/libgenome/pkg-plist b/biology/libgenome/pkg-plist
new file mode 100644
index 000000000000..540a5c61176b
--- /dev/null
+++ b/biology/libgenome/pkg-plist
@@ -0,0 +1,340 @@
+include/gn/gnABISource.h
+include/gn/gnBaseFeature.h
+include/gn/gnBaseFilter.h
+include/gn/gnBaseHeader.h
+include/gn/gnBaseQualifier.h
+include/gn/gnBaseSource.h
+include/gn/gnBaseSpec.h
+include/gn/gnClone.h
+include/gn/gnCompare.h
+include/gn/gnContigSpec.h
+include/gn/gnDNASequence.h
+include/gn/gnDNXSource.h
+include/gn/gnDataBaseSource.h
+include/gn/gnDebug.h
+include/gn/gnDefs.h
+include/gn/gnException.h
+include/gn/gnExceptionCode.h
+include/gn/gnFASSource.h
+include/gn/gnFastTranslator.h
+include/gn/gnFeature.h
+include/gn/gnFileContig.h
+include/gn/gnFileSource.h
+include/gn/gnFilter.h
+include/gn/gnFragmentSpec.h
+include/gn/gnGBKSource.h
+include/gn/gnGenomeSpec.h
+include/gn/gnLocation.h
+include/gn/gnMultiSpec.h
+include/gn/gnPosSpecificTranslator.h
+include/gn/gnProteinSequence.h
+include/gn/gnRAWSource.h
+include/gn/gnRNASequence.h
+include/gn/gnSEQSource.h
+include/gn/gnSequence.h
+include/gn/gnSetup.h
+include/gn/gnSourceFactory.h
+include/gn/gnSourceHeader.h
+include/gn/gnSourceQualifier.h
+include/gn/gnSourceSpec.h
+include/gn/gnStringHeader.h
+include/gn/gnStringQualifier.h
+include/gn/gnStringSpec.h
+include/gn/gnStringTools.h
+include/gn/gnTranslator.h
+include/gn/gnVersion.h
+@dirrm include/gn
+lib/libGenome.a
+lib/libGenome.la
+lib/libGenome.so
+lib/libGenome.so.0
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