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| author | yuri <yuri@FreeBSD.org> | 2018-12-07 08:10:05 +0800 |
|---|---|---|
| committer | yuri <yuri@FreeBSD.org> | 2018-12-07 08:10:05 +0800 |
| commit | 3ebef055bc7874c30f0be6a9aa40b9c1b0898855 (patch) | |
| tree | 7461b2e215f2faefc05c50cfd7bb7e86a3bede9b /biology | |
| parent | 198faf3c4d0df9a0318b89cd8ac460bd3e49a97e (diff) | |
| download | freebsd-ports-gnome-3ebef055bc7874c30f0be6a9aa40b9c1b0898855.tar.gz freebsd-ports-gnome-3ebef055bc7874c30f0be6a9aa40b9c1b0898855.tar.zst freebsd-ports-gnome-3ebef055bc7874c30f0be6a9aa40b9c1b0898855.zip | |
New port: math/groopm: Metagenomic binning suite
Diffstat (limited to 'biology')
| -rw-r--r-- | biology/Makefile | 1 | ||||
| -rw-r--r-- | biology/groopm/Makefile | 24 | ||||
| -rw-r--r-- | biology/groopm/distinfo | 3 | ||||
| -rw-r--r-- | biology/groopm/pkg-descr | 7 |
4 files changed, 35 insertions, 0 deletions
diff --git a/biology/Makefile b/biology/Makefile index 1b0668abcb4b..d08739cebb59 100644 --- a/biology/Makefile +++ b/biology/Makefile @@ -42,6 +42,7 @@ SUBDIR += gmap SUBDIR += gperiodic SUBDIR += grappa + SUBDIR += groopm SUBDIR += hmmer SUBDIR += htslib SUBDIR += hyphy diff --git a/biology/groopm/Makefile b/biology/groopm/Makefile new file mode 100644 index 000000000000..c336172c89da --- /dev/null +++ b/biology/groopm/Makefile @@ -0,0 +1,24 @@ +# $FreeBSD$ + +PORTNAME= GroopM +DISTVERSION= 0.3.4 +CATEGORIES= biology python +MASTER_SITES= CHEESESHOP + +MAINTAINER= yuri@FreeBSD.org +COMMENT= Metagenomic binning suite + +LICENSE= GPLv3 +LICENSE_FILE= ${WRKSRC}/LICENSE.txt + +RUN_DEPENDS= ${PYNUMPY} \ + ${PYTHON_PKGNAMEPREFIX}matplotlib>=1.1.0:math/py-matplotlib@${PY_FLAVOR} \ + ${PYTHON_PKGNAMEPREFIX}scipy>=0.10.1:science/py-scipy@${PY_FLAVOR} \ + ${PYTHON_PKGNAMEPREFIX}tables>=2.3:devel/py-tables@${PY_FLAVOR} + +USES= python +USE_PYTHON= distutils noflavors autoplist + +NO_ARCH= yes + +.include <bsd.port.mk> diff --git a/biology/groopm/distinfo b/biology/groopm/distinfo new file mode 100644 index 000000000000..d34f6fd58b81 --- /dev/null +++ b/biology/groopm/distinfo @@ -0,0 +1,3 @@ +TIMESTAMP = 1544140602 +SHA256 (GroopM-0.3.4.tar.gz) = 48bdaeb9010e7d81785697a55edc394ef36c2646b310d625a24bec740f1b6080 +SIZE (GroopM-0.3.4.tar.gz) = 127707 diff --git a/biology/groopm/pkg-descr b/biology/groopm/pkg-descr new file mode 100644 index 000000000000..969de4b5f1c1 --- /dev/null +++ b/biology/groopm/pkg-descr @@ -0,0 +1,7 @@ +GroopM is a metagenomic binning toolset. It leverages spatio-temoral +dynamics (differential coverage) to accurately (and almost automatically) +extract population genomes from multi-sample metagenomic datasets. + +GroopM is largely parameter-free. Use: groopm -h for more info. + +WWW: http://ecogenomics.github.io/GroopM/ |