diff options
| author | garga <garga@FreeBSD.org> | 2006-03-19 20:59:16 +0800 |
|---|---|---|
| committer | garga <garga@FreeBSD.org> | 2006-03-19 20:59:16 +0800 |
| commit | 52cd67792920b0541db4fb8818f4de0109df7e66 (patch) | |
| tree | ed46767a6e4f6b066947c69e208dc4b72c325134 /biology | |
| parent | e062d79f527c10f8b3e234ec526813fbeb28a14d (diff) | |
| download | freebsd-ports-gnome-52cd67792920b0541db4fb8818f4de0109df7e66.tar.gz freebsd-ports-gnome-52cd67792920b0541db4fb8818f4de0109df7e66.tar.zst freebsd-ports-gnome-52cd67792920b0541db4fb8818f4de0109df7e66.zip | |
- Update to 5.743
- Add a MASTER_SITE backup since oficial one just have last version and make
it fetchable again
Submitted by: maintainer by email
Reported by: krismail
Diffstat (limited to 'biology')
| -rw-r--r-- | biology/mafft/Makefile | 9 | ||||
| -rw-r--r-- | biology/mafft/distinfo | 6 | ||||
| -rw-r--r-- | biology/mafft/files/patch-Makefile | 39 | ||||
| -rw-r--r-- | biology/mafft/pkg-plist | 3 |
4 files changed, 13 insertions, 44 deletions
diff --git a/biology/mafft/Makefile b/biology/mafft/Makefile index 6467ac999d2c..5dd099a5c08f 100644 --- a/biology/mafft/Makefile +++ b/biology/mafft/Makefile @@ -7,9 +7,10 @@ # PORTNAME= mafft -PORTVERSION= 5.734 +PORTVERSION= 5.743 CATEGORIES= biology -MASTER_SITES= http://www.biophys.kyoto-u.ac.jp/~katoh/programs/align/mafft/ +MASTER_SITES= http://www.biophys.kyoto-u.ac.jp/~katoh/programs/align/mafft/ \ + http://genoma.unsam.edu.ar/~fernan/freebsd/distfiles/ DISTNAME= ${PORTNAME}-${PORTVERSION}-src EXTRACT_SUFX= .tgz @@ -23,6 +24,10 @@ BUILD_WRKSRC= ${WRKSRC}/src MAKE_ENV+= CFLAG="${CFLAGS}" +post-patch: + @${REINPLACE_CMD} -E 's,^(CC|PREFIX) =,\1 ?=,' \ + ${WRKSRC}/src/Makefile + do-install: ${INSTALL_SCRIPT} ${WRKSRC}/scripts/mafft ${PREFIX}/bin ${INSTALL_PROGRAM} ${WRKSRC}/binaries/* ${PREFIX}/bin diff --git a/biology/mafft/distinfo b/biology/mafft/distinfo index a6a5286c57a3..cc3247abe1f5 100644 --- a/biology/mafft/distinfo +++ b/biology/mafft/distinfo @@ -1,3 +1,3 @@ -MD5 (mafft-5.734-src.tgz) = 2186ffb447554163705b841c3913f2b6 -SHA256 (mafft-5.734-src.tgz) = 2bf8e274f0200a0fb78a4aa61d800699da2071f0d3cb87701c37b33f3b038168 -SIZE (mafft-5.734-src.tgz) = 439184 +MD5 (mafft-5.743-src.tgz) = 6a4a55ad0d289c98b04c79ccf737a9f8 +SHA256 (mafft-5.743-src.tgz) = 7bf0d450fea1d44fafee27c29c74b3ae4247ad0075b41729d9dc935e2a88de66 +SIZE (mafft-5.743-src.tgz) = 280226 diff --git a/biology/mafft/files/patch-Makefile b/biology/mafft/files/patch-Makefile deleted file mode 100644 index 9f59f1403ce4..000000000000 --- a/biology/mafft/files/patch-Makefile +++ /dev/null @@ -1,39 +0,0 @@ ---- src/Makefile.orig Wed Aug 31 06:58:17 2005 -+++ src/Makefile Sun Feb 5 01:07:37 2006 -@@ -1,8 +1,7 @@ --PREFIX = \/usr\/local\/lib\/mafft - #CC = gcc -O2 -g -pg -static - #CC = gcc -mno-cygwin -O3 - #CC = gcc -O3 -mcpu=970 -mtune=970 -mpowerpc64 -mpowerpc-gpopt -falign-loops=16 -falign-functions=16 -falign-labels=16 -falign-jumps=16 --CC = gcc -O3 -+#CC = gcc -O3 - #CC = gcc -g -O0 - PROGS = dvtditr dndfast7 dndblast sextet5 pairalign pairlocalalign \ - disttbfast tbfast tbfast2 mafft-profile f2cl \ -@@ -71,19 +70,19 @@ - @echo done. - - fftns: fftns.tmpl -- sed "s/_PREFIX/$(PREFIX)/" fftns.tmpl > fftns -+ sed "s,_PREFIX,$(PREFIX)," fftns.tmpl > fftns - fftnsi: fftnsi.tmpl -- sed "s/_PREFIX/$(PREFIX)/" fftnsi.tmpl > fftnsi -+ sed "s,_PREFIX,$(PREFIX)," fftnsi.tmpl > fftnsi - fftnsrough: fftnsrough.tmpl -- sed "s/_PREFIX/$(PREFIX)/" fftnsrough.tmpl > fftnsrough -+ sed "s,_PREFIX,$(PREFIX)," fftnsrough.tmpl > fftnsrough - nwns: nwns.tmpl -- sed "s/_PREFIX/$(PREFIX)/" nwns.tmpl > nwns -+ sed "s,_PREFIX,$(PREFIX)," nwns.tmpl > nwns - nwnsi: nwnsi.tmpl -- sed "s/_PREFIX/$(PREFIX)/" nwnsi.tmpl > nwnsi -+ sed "s,_PREFIX,$(PREFIX)," nwnsi.tmpl > nwnsi - nwnsrough: nwnsrough.tmpl -- sed "s/_PREFIX/$(PREFIX)/" nwnsrough.tmpl > nwnsrough -+ sed "s,_PREFIX,$(PREFIX)," nwnsrough.tmpl > nwnsrough - mafft: mafft.tmpl -- sed "s/_PREFIX/$(PREFIX)/" mafft.tmpl > mafft -+ sed "s,_PREFIX,$(PREFIX)," mafft.tmpl > mafft - - mltaln.h : functions.h - touch mltaln.h diff --git a/biology/mafft/pkg-plist b/biology/mafft/pkg-plist index 10d16212c3ef..fe1aba731d0c 100644 --- a/biology/mafft/pkg-plist +++ b/biology/mafft/pkg-plist @@ -1,3 +1,4 @@ +bin/dummy bin/mafft bin/disttbfast bin/dndblast @@ -8,6 +9,8 @@ bin/dvtditr bin/f2cl bin/getlag bin/mafft-profile +bin/multi2hat3s +bin/pair2hat3s bin/pairalign bin/pairlocalalign bin/score |