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| author | yuri <yuri@FreeBSD.org> | 2019-02-04 05:14:38 +0800 |
|---|---|---|
| committer | yuri <yuri@FreeBSD.org> | 2019-02-04 05:14:38 +0800 |
| commit | 5bfad2032ff97b699cf42954612e13037ba0ce09 (patch) | |
| tree | c063d3f4db9217c01af1d83a61c9640e6a25b5f7 /biology | |
| parent | 8e53d5f946b6fa83f652fc340a958da04184e96c (diff) | |
| download | freebsd-ports-gnome-5bfad2032ff97b699cf42954612e13037ba0ce09.tar.gz freebsd-ports-gnome-5bfad2032ff97b699cf42954612e13037ba0ce09.tar.zst freebsd-ports-gnome-5bfad2032ff97b699cf42954612e13037ba0ce09.zip | |
New port: biology/figtree: Graphical viewer of phylogenetic trees
Diffstat (limited to 'biology')
| -rw-r--r-- | biology/Makefile | 1 | ||||
| -rw-r--r-- | biology/figtree/Makefile | 38 | ||||
| -rw-r--r-- | biology/figtree/distinfo | 3 | ||||
| -rw-r--r-- | biology/figtree/pkg-descr | 7 |
4 files changed, 49 insertions, 0 deletions
diff --git a/biology/Makefile b/biology/Makefile index 1cc78dd1c853..8a1202dbbfd5 100644 --- a/biology/Makefile +++ b/biology/Makefile @@ -36,6 +36,7 @@ SUBDIR += fastqc SUBDIR += fasttree SUBDIR += fastx-toolkit + SUBDIR += figtree SUBDIR += fluctuate SUBDIR += freebayes SUBDIR += garlic diff --git a/biology/figtree/Makefile b/biology/figtree/Makefile new file mode 100644 index 000000000000..b13dc923a9a1 --- /dev/null +++ b/biology/figtree/Makefile @@ -0,0 +1,38 @@ +# $FreeBSD$ + +PORTNAME= figtree +DISTVERSIONPREFIX= v +DISTVERSION= 1.4.4 +CATEGORIES= biology java + +MAINTAINER= yuri@FreeBSD.org +COMMENT= Graphical viewer of phylogenetic trees + +LICENSE= GPLv2 + +USE_JAVA= yes +USE_ANT= yes +USE_GITHUB= yes +GH_ACCOUNT= rambaut + +NO_ARCH= yes + +DESKTOP_ENTRIES="FigTree" "Phylogenetic tree viewer" "${PREFIX}/share/pixmaps/${PORTNAME}.png" "${PORTNAME}" \ + "Biology;Science;Education;" true + +PLIST_FILES= bin/${PORTNAME} \ + ${JAVAJARDIR}/${PORTNAME}-pdf.jar \ + ${JAVAJARDIR}/${PORTNAME}.jar \ + ${JAVAJARDIR}/figtreepanel.jar \ + share/pixmaps/${PORTNAME}.png \ + +do-install: + @(echo "#!/bin/sh"; \ + echo ""; \ + echo ${JAVA} -jar ${JAVAJARDIR}/${PORTNAME}.jar \ + ) > ${STAGEDIR}${PREFIX}/bin/${PORTNAME} + @${CHMOD} +x ${STAGEDIR}${PREFIX}/bin/${PORTNAME} + ${INSTALL_DATA} ${WRKSRC}/dist/*.jar ${STAGEDIR}${JAVAJARDIR} + ${INSTALL_DATA} ${WRKSRC}/release/Linux/icons/${PORTNAME}.png ${STAGEDIR}${PREFIX}/share/pixmaps/${PORTNAME}.png + +.include <bsd.port.mk> diff --git a/biology/figtree/distinfo b/biology/figtree/distinfo new file mode 100644 index 000000000000..f278a27654ef --- /dev/null +++ b/biology/figtree/distinfo @@ -0,0 +1,3 @@ +TIMESTAMP = 1549226829 +SHA256 (rambaut-figtree-v1.4.4_GH0.tar.gz) = 29a2e7fb2de0fa213aa0bb3003347fe278c28d8273bbc06f1d98cda9dda35d89 +SIZE (rambaut-figtree-v1.4.4_GH0.tar.gz) = 20994009 diff --git a/biology/figtree/pkg-descr b/biology/figtree/pkg-descr new file mode 100644 index 000000000000..265151d06d62 --- /dev/null +++ b/biology/figtree/pkg-descr @@ -0,0 +1,7 @@ +FigTree is designed as a graphical viewer of phylogenetic trees and as a program +for producing publication-ready figures. As with most of my programs, it was +written for my own needs so may not be as polished and feature-complete as a +commercial program. In particular it is designed to display summarized and +annotated trees produced by BEAST. + +WWW: http://tree.bio.ed.ac.uk/software/figtree/ |