diff options
author | miwi <miwi@FreeBSD.org> | 2006-10-31 21:25:21 +0800 |
---|---|---|
committer | miwi <miwi@FreeBSD.org> | 2006-10-31 21:25:21 +0800 |
commit | 7ea46e2d8fabd3c61498221e08d7c95147511c3e (patch) | |
tree | c87e8d2fda183693c0015a689dffc9ee92d8be09 /biology | |
parent | 085f4a34a9de75b9ba870087615c0baaed23509f (diff) | |
download | freebsd-ports-gnome-7ea46e2d8fabd3c61498221e08d7c95147511c3e.tar.gz freebsd-ports-gnome-7ea46e2d8fabd3c61498221e08d7c95147511c3e.tar.zst freebsd-ports-gnome-7ea46e2d8fabd3c61498221e08d7c95147511c3e.zip |
- Update to 1.42
PR: ports/104635
Submitted by: Thomas Abthorpe <thomas@goodking.ca>
Approved by: maintainer
Diffstat (limited to 'biology')
-rw-r--r-- | biology/py-biopython/Makefile | 4 | ||||
-rw-r--r-- | biology/py-biopython/distinfo | 6 | ||||
-rw-r--r-- | biology/py-biopython/pkg-plist | 201 |
3 files changed, 90 insertions, 121 deletions
diff --git a/biology/py-biopython/Makefile b/biology/py-biopython/Makefile index 58f46fcb30a3..944646af714a 100644 --- a/biology/py-biopython/Makefile +++ b/biology/py-biopython/Makefile @@ -6,9 +6,9 @@ # PORTNAME= biopython -PORTVERSION= 1.41 +PORTVERSION= 1.42 CATEGORIES= biology python -MASTER_SITES= http://www.biopython.org/files/ +MASTER_SITES= http://www.biopython.org/DIST/ PKGNAMEPREFIX= ${PYTHON_PKGNAMEPREFIX} MAINTAINER= mauricio@arareko.net diff --git a/biology/py-biopython/distinfo b/biology/py-biopython/distinfo index 9f9cba1a802f..f69916c0704c 100644 --- a/biology/py-biopython/distinfo +++ b/biology/py-biopython/distinfo @@ -1,3 +1,3 @@ -MD5 (biopython-1.41.tar.gz) = 03f8efc258fb49b07d1a2b642fa8362e -SHA256 (biopython-1.41.tar.gz) = 15b708b7635fd993aad3c53fd4cfc28601da6d4332b027d09899f1cb5178cef9 -SIZE (biopython-1.41.tar.gz) = 3807547 +MD5 (biopython-1.42.tar.gz) = 6d9bf58d0fcfa5a3b2053ad419069ff3 +SHA256 (biopython-1.42.tar.gz) = ba4d00fdf7de67196ecba317dee09a14850b40596bd83d73e458c5f19fc9fc58 +SIZE (biopython-1.42.tar.gz) = 3933507 diff --git a/biology/py-biopython/pkg-plist b/biology/py-biopython/pkg-plist index d7aeff947143..1f603ce10a5a 100644 --- a/biology/py-biopython/pkg-plist +++ b/biology/py-biopython/pkg-plist @@ -7,9 +7,6 @@ %%PYTHON_SITELIBDIR%%/Bio/Ais/__init__.py %%PYTHON_SITELIBDIR%%/Bio/Ais/__init__.pyc %%PYTHON_SITELIBDIR%%/Bio/Ais/__init__.pyo -%%PYTHON_SITELIBDIR%%/Bio/Ais/example_ais2.py -%%PYTHON_SITELIBDIR%%/Bio/Ais/example_ais2.pyc -%%PYTHON_SITELIBDIR%%/Bio/Ais/example_ais2.pyo %%PYTHON_SITELIBDIR%%/Bio/Align/AlignInfo.py %%PYTHON_SITELIBDIR%%/Bio/Align/AlignInfo.pyc %%PYTHON_SITELIBDIR%%/Bio/Align/AlignInfo.pyo @@ -98,9 +95,6 @@ %%PYTHON_SITELIBDIR%%/Bio/Cluster/__init__.pyc %%PYTHON_SITELIBDIR%%/Bio/Cluster/__init__.pyo %%PYTHON_SITELIBDIR%%/Bio/Cluster/cluster.so -%%PYTHON_SITELIBDIR%%/Bio/Cluster/data.py -%%PYTHON_SITELIBDIR%%/Bio/Cluster/data.pyc -%%PYTHON_SITELIBDIR%%/Bio/Cluster/data.pyo %%PYTHON_SITELIBDIR%%/Bio/Compass/__init__.py %%PYTHON_SITELIBDIR%%/Bio/Compass/__init__.pyc %%PYTHON_SITELIBDIR%%/Bio/Compass/__init__.pyo @@ -678,10 +672,6 @@ %%PYTHON_SITELIBDIR%%/Bio/PDB/__init__.py %%PYTHON_SITELIBDIR%%/Bio/PDB/__init__.pyc %%PYTHON_SITELIBDIR%%/Bio/PDB/__init__.pyo -%%PYTHON_SITELIBDIR%%/Bio/PDB/mmCIF/MMCIFlex.so -%%PYTHON_SITELIBDIR%%/Bio/PDB/mmCIF/__init__.py -%%PYTHON_SITELIBDIR%%/Bio/PDB/mmCIF/__init__.pyc -%%PYTHON_SITELIBDIR%%/Bio/PDB/mmCIF/__init__.pyo %%PYTHON_SITELIBDIR%%/Bio/PDB/parse_pdb_header.py %%PYTHON_SITELIBDIR%%/Bio/PDB/parse_pdb_header.pyc %%PYTHON_SITELIBDIR%%/Bio/PDB/parse_pdb_header.pyo @@ -727,12 +717,6 @@ %%PYTHON_SITELIBDIR%%/Bio/Rebase/__init__.py %%PYTHON_SITELIBDIR%%/Bio/Rebase/__init__.pyc %%PYTHON_SITELIBDIR%%/Bio/Rebase/__init__.pyo -%%PYTHON_SITELIBDIR%%/Bio/RecordFile.py -%%PYTHON_SITELIBDIR%%/Bio/RecordFile.pyc -%%PYTHON_SITELIBDIR%%/Bio/RecordFile.pyo -%%PYTHON_SITELIBDIR%%/Bio/ReseekFile.py -%%PYTHON_SITELIBDIR%%/Bio/ReseekFile.pyc -%%PYTHON_SITELIBDIR%%/Bio/ReseekFile.pyo %%PYTHON_SITELIBDIR%%/Bio/Restriction/DNAUtils.so %%PYTHON_SITELIBDIR%%/Bio/Restriction/PrintFormat.py %%PYTHON_SITELIBDIR%%/Bio/Restriction/PrintFormat.pyc @@ -791,9 +775,6 @@ %%PYTHON_SITELIBDIR%%/Bio/SVDSuperimposer/__init__.py %%PYTHON_SITELIBDIR%%/Bio/SVDSuperimposer/__init__.pyc %%PYTHON_SITELIBDIR%%/Bio/SVDSuperimposer/__init__.pyo -%%PYTHON_SITELIBDIR%%/Bio/SVM.py -%%PYTHON_SITELIBDIR%%/Bio/SVM.pyc -%%PYTHON_SITELIBDIR%%/Bio/SVM.pyo %%PYTHON_SITELIBDIR%%/Bio/Saf/Record.py %%PYTHON_SITELIBDIR%%/Bio/Saf/Record.pyc %%PYTHON_SITELIBDIR%%/Bio/Saf/Record.pyo @@ -942,9 +923,7 @@ %%PYTHON_SITELIBDIR%%/Bio/builders/__init__.pyc %%PYTHON_SITELIBDIR%%/Bio/builders/__init__.pyo %%PYTHON_SITELIBDIR%%/Bio/cMarkovModel.so -%%PYTHON_SITELIBDIR%%/Bio/cSVM.so %%PYTHON_SITELIBDIR%%/Bio/cdistance.so -%%PYTHON_SITELIBDIR%%/Bio/ckMeans.so %%PYTHON_SITELIBDIR%%/Bio/clistfns.so %%PYTHON_SITELIBDIR%%/Bio/cmathfns.so %%PYTHON_SITELIBDIR%%/Bio/config/DBRegistry.py @@ -1075,9 +1054,6 @@ %%PYTHON_SITELIBDIR%%/Bio/formatdefs/swissprot.py %%PYTHON_SITELIBDIR%%/Bio/formatdefs/swissprot.pyc %%PYTHON_SITELIBDIR%%/Bio/formatdefs/swissprot.pyo -%%PYTHON_SITELIBDIR%%/Bio/kMeans.py -%%PYTHON_SITELIBDIR%%/Bio/kMeans.pyc -%%PYTHON_SITELIBDIR%%/Bio/kMeans.pyo %%PYTHON_SITELIBDIR%%/Bio/kNN.py %%PYTHON_SITELIBDIR%%/Bio/kNN.pyc %%PYTHON_SITELIBDIR%%/Bio/kNN.pyo @@ -1093,9 +1069,6 @@ %%PYTHON_SITELIBDIR%%/Bio/pairwise2.py %%PYTHON_SITELIBDIR%%/Bio/pairwise2.pyc %%PYTHON_SITELIBDIR%%/Bio/pairwise2.pyo -%%PYTHON_SITELIBDIR%%/Bio/sequtils.py -%%PYTHON_SITELIBDIR%%/Bio/sequtils.pyc -%%PYTHON_SITELIBDIR%%/Bio/sequtils.pyo %%PYTHON_SITELIBDIR%%/Bio/stringfns.py %%PYTHON_SITELIBDIR%%/Bio/stringfns.pyc %%PYTHON_SITELIBDIR%%/Bio/stringfns.pyo @@ -1121,9 +1094,6 @@ %%PYTHON_SITELIBDIR%%/Bio/writers/__init__.py %%PYTHON_SITELIBDIR%%/Bio/writers/__init__.pyc %%PYTHON_SITELIBDIR%%/Bio/writers/__init__.pyo -%%PYTHON_SITELIBDIR%%/Bio/xkMeans.py -%%PYTHON_SITELIBDIR%%/Bio/xkMeans.pyc -%%PYTHON_SITELIBDIR%%/Bio/xkMeans.pyo %%PYTHON_SITELIBDIR%%/BioSQL/BioSeq.py %%PYTHON_SITELIBDIR%%/BioSQL/BioSeq.pyc %%PYTHON_SITELIBDIR%%/BioSQL/BioSeq.pyo @@ -1184,92 +1154,91 @@ %%PYTHON_SITELIBDIR%%/Martel/setup.py %%PYTHON_SITELIBDIR%%/Martel/setup.pyc %%PYTHON_SITELIBDIR%%/Martel/setup.pyo -@dirrm %%PYTHON_SITELIBDIR%%/Bio/Affy -@dirrm %%PYTHON_SITELIBDIR%%/Bio/Ais -@dirrm %%PYTHON_SITELIBDIR%%/Bio/Align -@dirrm %%PYTHON_SITELIBDIR%%/Bio/AlignAce -@dirrm %%PYTHON_SITELIBDIR%%/Bio/Alphabet -@dirrm %%PYTHON_SITELIBDIR%%/Bio/Application -@dirrm %%PYTHON_SITELIBDIR%%/Bio/Blast -@dirrm %%PYTHON_SITELIBDIR%%/Bio/CAPS -@dirrm %%PYTHON_SITELIBDIR%%/Bio/CDD -@dirrm %%PYTHON_SITELIBDIR%%/Bio/Clustalw -@dirrm %%PYTHON_SITELIBDIR%%/Bio/Cluster -@dirrm %%PYTHON_SITELIBDIR%%/Bio/Compass -@dirrm %%PYTHON_SITELIBDIR%%/Bio/Crystal -@dirrm %%PYTHON_SITELIBDIR%%/Bio/Data -@dirrm %%PYTHON_SITELIBDIR%%/Bio/ECell -@dirrm %%PYTHON_SITELIBDIR%%/Bio/EUtils/DTDs -@dirrm %%PYTHON_SITELIBDIR%%/Bio/EUtils -@dirrm %%PYTHON_SITELIBDIR%%/Bio/Emboss -@dirrm %%PYTHON_SITELIBDIR%%/Bio/Encodings -@dirrm %%PYTHON_SITELIBDIR%%/Bio/Enzyme -@dirrm %%PYTHON_SITELIBDIR%%/Bio/FSSP -@dirrm %%PYTHON_SITELIBDIR%%/Bio/Fasta -@dirrm %%PYTHON_SITELIBDIR%%/Bio/GA/Crossover -@dirrm %%PYTHON_SITELIBDIR%%/Bio/GA/Mutation -@dirrm %%PYTHON_SITELIBDIR%%/Bio/GA/Repair -@dirrm %%PYTHON_SITELIBDIR%%/Bio/GA/Selection -@dirrm %%PYTHON_SITELIBDIR%%/Bio/GA -@dirrm %%PYTHON_SITELIBDIR%%/Bio/GFF -@dirrm %%PYTHON_SITELIBDIR%%/Bio/GenBank -@dirrm %%PYTHON_SITELIBDIR%%/Bio/Geo -@dirrm %%PYTHON_SITELIBDIR%%/Bio/Gobase -@dirrm %%PYTHON_SITELIBDIR%%/Bio/Graphics -@dirrm %%PYTHON_SITELIBDIR%%/Bio/HMM -@dirrm %%PYTHON_SITELIBDIR%%/Bio/IntelliGenetics -@dirrm %%PYTHON_SITELIBDIR%%/Bio/InterPro -@dirrm %%PYTHON_SITELIBDIR%%/Bio/KEGG/Compound -@dirrm %%PYTHON_SITELIBDIR%%/Bio/KEGG/Enzyme -@dirrm %%PYTHON_SITELIBDIR%%/Bio/KEGG/Map -@dirrm %%PYTHON_SITELIBDIR%%/Bio/KEGG -@dirrm %%PYTHON_SITELIBDIR%%/Bio/Kabat -@dirrm %%PYTHON_SITELIBDIR%%/Bio/LocusLink -@dirrm %%PYTHON_SITELIBDIR%%/Bio/MEME -@dirrm %%PYTHON_SITELIBDIR%%/Bio/Medline -@dirrm %%PYTHON_SITELIBDIR%%/Bio/MetaTool -@dirrm %%PYTHON_SITELIBDIR%%/Bio/Mindy -@dirrm %%PYTHON_SITELIBDIR%%/Bio/MultiProc -@dirrm %%PYTHON_SITELIBDIR%%/Bio/NBRF -@dirrm %%PYTHON_SITELIBDIR%%/Bio/NMR -@dirrm %%PYTHON_SITELIBDIR%%/Bio/Ndb -@dirrm %%PYTHON_SITELIBDIR%%/Bio/NeuralNetwork/BackPropagation -@dirrm %%PYTHON_SITELIBDIR%%/Bio/NeuralNetwork/Gene -@dirrm %%PYTHON_SITELIBDIR%%/Bio/NeuralNetwork -@dirrm %%PYTHON_SITELIBDIR%%/Bio/Nexus -@dirrm %%PYTHON_SITELIBDIR%%/Bio/PDB/mmCIF -@dirrm %%PYTHON_SITELIBDIR%%/Bio/PDB -@dirrm %%PYTHON_SITELIBDIR%%/Bio/Parsers -@dirrm %%PYTHON_SITELIBDIR%%/Bio/Pathway/Rep -@dirrm %%PYTHON_SITELIBDIR%%/Bio/Pathway -@dirrm %%PYTHON_SITELIBDIR%%/Bio/Prosite -@dirrm %%PYTHON_SITELIBDIR%%/Bio/Rebase -@dirrm %%PYTHON_SITELIBDIR%%/Bio/Restriction/_Update -@dirrm %%PYTHON_SITELIBDIR%%/Bio/Restriction -@dirrm %%PYTHON_SITELIBDIR%%/Bio/SCOP -@dirrm %%PYTHON_SITELIBDIR%%/Bio/SVDSuperimposer -@dirrm %%PYTHON_SITELIBDIR%%/Bio/Saf -@dirrm %%PYTHON_SITELIBDIR%%/Bio/SeqIO -@dirrm %%PYTHON_SITELIBDIR%%/Bio/SeqUtils -@dirrm %%PYTHON_SITELIBDIR%%/Bio/Sequencing -@dirrm %%PYTHON_SITELIBDIR%%/Bio/Statistics -@dirrm %%PYTHON_SITELIBDIR%%/Bio/SubsMat -@dirrm %%PYTHON_SITELIBDIR%%/Bio/SwissProt -@dirrm %%PYTHON_SITELIBDIR%%/Bio/UniGene -@dirrm %%PYTHON_SITELIBDIR%%/Bio/WWW -@dirrm %%PYTHON_SITELIBDIR%%/Bio/Wise -@dirrm %%PYTHON_SITELIBDIR%%/Bio/builders/Search -@dirrm %%PYTHON_SITELIBDIR%%/Bio/builders/SeqRecord -@dirrm %%PYTHON_SITELIBDIR%%/Bio/builders -@dirrm %%PYTHON_SITELIBDIR%%/Bio/config -@dirrm %%PYTHON_SITELIBDIR%%/Bio/dbdefs -@dirrm %%PYTHON_SITELIBDIR%%/Bio/expressions/blast -@dirrm %%PYTHON_SITELIBDIR%%/Bio/expressions/embl -@dirrm %%PYTHON_SITELIBDIR%%/Bio/expressions/swissprot -@dirrm %%PYTHON_SITELIBDIR%%/Bio/expressions -@dirrm %%PYTHON_SITELIBDIR%%/Bio/formatdefs +@dirrm %%PYTHON_SITELIBDIR%%/Martel +@dirrm %%PYTHON_SITELIBDIR%%/BioSQL @dirrm %%PYTHON_SITELIBDIR%%/Bio/writers/SeqRecord @dirrm %%PYTHON_SITELIBDIR%%/Bio/writers +@dirrm %%PYTHON_SITELIBDIR%%/Bio/formatdefs +@dirrm %%PYTHON_SITELIBDIR%%/Bio/expressions/swissprot +@dirrm %%PYTHON_SITELIBDIR%%/Bio/expressions/embl +@dirrm %%PYTHON_SITELIBDIR%%/Bio/expressions/blast +@dirrm %%PYTHON_SITELIBDIR%%/Bio/expressions +@dirrm %%PYTHON_SITELIBDIR%%/Bio/dbdefs +@dirrm %%PYTHON_SITELIBDIR%%/Bio/config +@dirrm %%PYTHON_SITELIBDIR%%/Bio/builders/SeqRecord +@dirrm %%PYTHON_SITELIBDIR%%/Bio/builders/Search +@dirrm %%PYTHON_SITELIBDIR%%/Bio/builders +@dirrm %%PYTHON_SITELIBDIR%%/Bio/Wise +@dirrm %%PYTHON_SITELIBDIR%%/Bio/WWW +@dirrm %%PYTHON_SITELIBDIR%%/Bio/UniGene +@dirrm %%PYTHON_SITELIBDIR%%/Bio/SwissProt +@dirrm %%PYTHON_SITELIBDIR%%/Bio/SubsMat +@dirrm %%PYTHON_SITELIBDIR%%/Bio/Statistics +@dirrm %%PYTHON_SITELIBDIR%%/Bio/Sequencing +@dirrm %%PYTHON_SITELIBDIR%%/Bio/SeqUtils +@dirrm %%PYTHON_SITELIBDIR%%/Bio/SeqIO +@dirrm %%PYTHON_SITELIBDIR%%/Bio/Saf +@dirrm %%PYTHON_SITELIBDIR%%/Bio/SVDSuperimposer +@dirrm %%PYTHON_SITELIBDIR%%/Bio/SCOP +@dirrm %%PYTHON_SITELIBDIR%%/Bio/Restriction/_Update +@dirrm %%PYTHON_SITELIBDIR%%/Bio/Restriction +@dirrm %%PYTHON_SITELIBDIR%%/Bio/Rebase +@dirrm %%PYTHON_SITELIBDIR%%/Bio/Prosite +@dirrm %%PYTHON_SITELIBDIR%%/Bio/Pathway/Rep +@dirrm %%PYTHON_SITELIBDIR%%/Bio/Pathway +@dirrm %%PYTHON_SITELIBDIR%%/Bio/Parsers +@dirrm %%PYTHON_SITELIBDIR%%/Bio/PDB +@dirrm %%PYTHON_SITELIBDIR%%/Bio/Nexus +@dirrm %%PYTHON_SITELIBDIR%%/Bio/NeuralNetwork/Gene +@dirrm %%PYTHON_SITELIBDIR%%/Bio/NeuralNetwork/BackPropagation +@dirrm %%PYTHON_SITELIBDIR%%/Bio/NeuralNetwork +@dirrm %%PYTHON_SITELIBDIR%%/Bio/Ndb +@dirrm %%PYTHON_SITELIBDIR%%/Bio/NMR +@dirrm %%PYTHON_SITELIBDIR%%/Bio/NBRF +@dirrm %%PYTHON_SITELIBDIR%%/Bio/MultiProc +@dirrm %%PYTHON_SITELIBDIR%%/Bio/Mindy +@dirrm %%PYTHON_SITELIBDIR%%/Bio/MetaTool +@dirrm %%PYTHON_SITELIBDIR%%/Bio/Medline +@dirrm %%PYTHON_SITELIBDIR%%/Bio/MEME +@dirrm %%PYTHON_SITELIBDIR%%/Bio/LocusLink +@dirrm %%PYTHON_SITELIBDIR%%/Bio/Kabat +@dirrm %%PYTHON_SITELIBDIR%%/Bio/KEGG/Map +@dirrm %%PYTHON_SITELIBDIR%%/Bio/KEGG/Enzyme +@dirrm %%PYTHON_SITELIBDIR%%/Bio/KEGG/Compound +@dirrm %%PYTHON_SITELIBDIR%%/Bio/KEGG +@dirrm %%PYTHON_SITELIBDIR%%/Bio/InterPro +@dirrm %%PYTHON_SITELIBDIR%%/Bio/IntelliGenetics +@dirrm %%PYTHON_SITELIBDIR%%/Bio/HMM +@dirrm %%PYTHON_SITELIBDIR%%/Bio/Graphics +@dirrm %%PYTHON_SITELIBDIR%%/Bio/Gobase +@dirrm %%PYTHON_SITELIBDIR%%/Bio/Geo +@dirrm %%PYTHON_SITELIBDIR%%/Bio/GenBank +@dirrm %%PYTHON_SITELIBDIR%%/Bio/GFF +@dirrm %%PYTHON_SITELIBDIR%%/Bio/GA/Selection +@dirrm %%PYTHON_SITELIBDIR%%/Bio/GA/Repair +@dirrm %%PYTHON_SITELIBDIR%%/Bio/GA/Mutation +@dirrm %%PYTHON_SITELIBDIR%%/Bio/GA/Crossover +@dirrm %%PYTHON_SITELIBDIR%%/Bio/GA +@dirrm %%PYTHON_SITELIBDIR%%/Bio/Fasta +@dirrm %%PYTHON_SITELIBDIR%%/Bio/FSSP +@dirrm %%PYTHON_SITELIBDIR%%/Bio/Enzyme +@dirrm %%PYTHON_SITELIBDIR%%/Bio/Encodings +@dirrm %%PYTHON_SITELIBDIR%%/Bio/Emboss +@dirrm %%PYTHON_SITELIBDIR%%/Bio/EUtils/DTDs +@dirrm %%PYTHON_SITELIBDIR%%/Bio/EUtils +@dirrm %%PYTHON_SITELIBDIR%%/Bio/ECell +@dirrm %%PYTHON_SITELIBDIR%%/Bio/Data +@dirrm %%PYTHON_SITELIBDIR%%/Bio/Crystal +@dirrm %%PYTHON_SITELIBDIR%%/Bio/Compass +@dirrm %%PYTHON_SITELIBDIR%%/Bio/Cluster +@dirrm %%PYTHON_SITELIBDIR%%/Bio/Clustalw +@dirrm %%PYTHON_SITELIBDIR%%/Bio/CDD +@dirrm %%PYTHON_SITELIBDIR%%/Bio/CAPS +@dirrm %%PYTHON_SITELIBDIR%%/Bio/Blast +@dirrm %%PYTHON_SITELIBDIR%%/Bio/Application +@dirrm %%PYTHON_SITELIBDIR%%/Bio/Alphabet +@dirrm %%PYTHON_SITELIBDIR%%/Bio/AlignAce +@dirrm %%PYTHON_SITELIBDIR%%/Bio/Align +@dirrm %%PYTHON_SITELIBDIR%%/Bio/Ais +@dirrm %%PYTHON_SITELIBDIR%%/Bio/Affy @dirrm %%PYTHON_SITELIBDIR%%/Bio -@dirrm %%PYTHON_SITELIBDIR%%/BioSQL -@dirrm %%PYTHON_SITELIBDIR%%/Martel |