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| author | amdmi3 <amdmi3@FreeBSD.org> | 2015-04-02 23:41:31 +0800 |
|---|---|---|
| committer | amdmi3 <amdmi3@FreeBSD.org> | 2015-04-02 23:41:31 +0800 |
| commit | 8dbb5bfaba20f63be0689eb624b265ea131c5c25 (patch) | |
| tree | 0bca72df1e1e1169536f4e604c8eebae3799f8a2 /biology | |
| parent | 06c12bc6dc0029f725964cf1f3541f527f4ed872 (diff) | |
| download | freebsd-ports-gnome-8dbb5bfaba20f63be0689eb624b265ea131c5c25.tar.gz freebsd-ports-gnome-8dbb5bfaba20f63be0689eb624b265ea131c5c25.tar.zst freebsd-ports-gnome-8dbb5bfaba20f63be0689eb624b265ea131c5c25.zip | |
- Remove deprecated option
- Tweak compiler flags
- Add LICENSE
- Pass maintainership to submitter
PR: 199066
Submitted by: jwbacon@tds.net
Diffstat (limited to 'biology')
| -rw-r--r-- | biology/hmmer/Makefile | 25 |
1 files changed, 16 insertions, 9 deletions
diff --git a/biology/hmmer/Makefile b/biology/hmmer/Makefile index 355d2355d858..ca974541a578 100644 --- a/biology/hmmer/Makefile +++ b/biology/hmmer/Makefile @@ -3,37 +3,44 @@ PORTNAME= hmmer PORTVERSION= 3.0 +PORTREVISION= 1 CATEGORIES= biology MASTER_SITES= ftp://selab.janelia.org/pub/software/hmmer3/3.0/ \ http://selab.janelia.org/software/hmmer3/3.0/ -MAINTAINER= ports@FreeBSD.org +MAINTAINER= jwbacon@tds.net COMMENT= Profile hidden Markov models for biological sequence analysis +LICENSE= GPLv3 +LICENSE_FILE= ${WRKSRC}/LICENSE + GNU_CONFIGURE= yes USES= perl5 -CONFIGURE_ARGS+=--enable-threads --enable-lfs +CONFIGURE_ARGS+=--enable-threads DOCFILES= COPYRIGHT INSTALL LICENSE Userguide.pdf EXAMPLES= 7LESS_DROME Pkinase.sto fn3.sto globins4.sto minifam.h3f minifam.h3p \ HBB_HUMAN fn3.hmm globins4.hmm globins45.fa minifam.h3i \ Pkinase.hmm fn3.out globins4.out minifam minifam.h3m -OPTIONS_DEFINE= PVM DOCS EXAMPLES -PVM_DESC= PVM support +OPTIONS_DEFINE= DOCS EXAMPLES + +.include <bsd.port.options.mk> -PVM_CONFIGURE_ENV= PVM_ROOT="${LOCALBASE}/lib/pvm" PVM_ARCH="FREEBSD" -PVM_CONFIGURE_WITH= pvm -PVM_BUILD_DEPENDS= pvm:${PORTSDIR}/net/pvm +# HMMER is useless without SSE and any PC in use today should support it +# Should probably also do enable-vmx on Power processors to enable +# Altivec/VMX, but I don't have a machine to test this. +.if ${ARCH} == "amd64" || ${ARCH} == "ia64" || ${ARCH} == "i386" +CONFIGURE_ARGS+=--enable-sse +.endif post-install: + @${STRIP_CMD} ${STAGEDIR}${PREFIX}/bin/* (cd ${WRKSRC}/documentation/man; for i in *.man; do \ ${INSTALL_MAN} $$i ${STAGEDIR}${PREFIX}/man/man1/`echo $$i|${SED} 's/.man/.1/'`; \ done) - @${MKDIR} ${STAGEDIR}${DOCSDIR} ${INSTALL_DATA} ${DOCFILES:S,^,${WRKSRC}/,} ${STAGEDIR}${DOCSDIR} - @${MKDIR} ${STAGEDIR}${EXAMPLESDIR} ${INSTALL_DATA} ${EXAMPLES:S,^,${WRKSRC}/tutorial/,} ${STAGEDIR}${EXAMPLESDIR} |