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authorsunpoet <sunpoet@FreeBSD.org>2013-10-04 00:19:59 +0800
committersunpoet <sunpoet@FreeBSD.org>2013-10-04 00:19:59 +0800
commitadd7bfb7d9fa1dee43386398d0850eeb0d0c5d07 (patch)
tree5def63fff73803d3227b889243b22c8a5dd40a0c /biology
parent2865391090e9034de508866300005b09e04eb9fa (diff)
downloadfreebsd-ports-gnome-add7bfb7d9fa1dee43386398d0850eeb0d0c5d07.tar.gz
freebsd-ports-gnome-add7bfb7d9fa1dee43386398d0850eeb0d0c5d07.tar.zst
freebsd-ports-gnome-add7bfb7d9fa1dee43386398d0850eeb0d0c5d07.zip
- Update to 1.7
- Support STAGEDIR Changes: http://search.cpan.org/dist/Bio-GFF3/Changes
Diffstat (limited to 'biology')
-rw-r--r--biology/p5-Bio-GFF3/Makefile15
-rw-r--r--biology/p5-Bio-GFF3/distinfo4
-rw-r--r--biology/p5-Bio-GFF3/pkg-plist5
3 files changed, 12 insertions, 12 deletions
diff --git a/biology/p5-Bio-GFF3/Makefile b/biology/p5-Bio-GFF3/Makefile
index 535053c0ccdb..b6f897d88059 100644
--- a/biology/p5-Bio-GFF3/Makefile
+++ b/biology/p5-Bio-GFF3/Makefile
@@ -2,7 +2,7 @@
# $FreeBSD$
PORTNAME= Bio-GFF3
-PORTVERSION= 1.6
+PORTVERSION= 1.7
CATEGORIES= biology perl5
MASTER_SITES= CPAN
PKGNAMEPREFIX= p5-
@@ -13,19 +13,14 @@ COMMENT= Fast low-level functions for parsing and formatting GFF3
LICENSE= ART10 GPLv1
LICENSE_COMB= dual
-BUILD_DEPENDS= p5-List-MoreUtils>=0:${PORTSDIR}/lang/p5-List-MoreUtils \
+BUILD_DEPENDS= p5-File-ReadBackwards>=0:${PORTSDIR}/devel/p5-File-ReadBackwards \
+ p5-List-MoreUtils>=0:${PORTSDIR}/lang/p5-List-MoreUtils \
p5-URI>=0:${PORTSDIR}/net/p5-URI
RUN_DEPENDS:= ${BUILD_DEPENDS}
-TEST_DEPENDS= p5-IO-String>=0:${PORTSDIR}/devel/p5-IO-String
+TEST_DEPENDS= p5-IO-String>=0:${PORTSDIR}/devel/p5-IO-String \
+ p5-IO-stringy>=0:${PORTSDIR}/devel/p5-IO-stringy
USES= perl5
USE_PERL5= configure
-MAN1= gff3_from_fasta.1
-MAN3= Bio::GFF3::LowLevel.3 \
- Bio::GFF3::LowLevel::Parser.3 \
- Bio::GFF3::LowLevel::Parser::1_0_backcompat.3 \
- Bio::GFF3::Transform::FromFasta.3
-
-NO_STAGE= yes
.include <bsd.port.mk>
diff --git a/biology/p5-Bio-GFF3/distinfo b/biology/p5-Bio-GFF3/distinfo
index b846f58d4a33..84f47db1f9f8 100644
--- a/biology/p5-Bio-GFF3/distinfo
+++ b/biology/p5-Bio-GFF3/distinfo
@@ -1,2 +1,2 @@
-SHA256 (Bio-GFF3-1.6.tar.gz) = 147ec01d0c26c7c4b650514f1f6a3ac05d5c3f85278588b7f466dd163e78a0dd
-SIZE (Bio-GFF3-1.6.tar.gz) = 71969
+SHA256 (Bio-GFF3-1.7.tar.gz) = 4fcaabc440fdfc8a92a2bf30624787014619f86fc27cda17075fdd342eeae013
+SIZE (Bio-GFF3-1.7.tar.gz) = 74113
diff --git a/biology/p5-Bio-GFF3/pkg-plist b/biology/p5-Bio-GFF3/pkg-plist
index 84faeb078fb3..fa839cccd769 100644
--- a/biology/p5-Bio-GFF3/pkg-plist
+++ b/biology/p5-Bio-GFF3/pkg-plist
@@ -4,6 +4,11 @@ bin/gff3_from_fasta
%%SITE_PERL%%/Bio/GFF3/LowLevel/Parser.pm
%%SITE_PERL%%/Bio/GFF3/LowLevel.pm
%%SITE_PERL%%/%%PERL_ARCH%%/auto/Bio/GFF3/.packlist
+%%PERL5_MAN3%%/Bio::GFF3::LowLevel.3.gz
+%%PERL5_MAN3%%/Bio::GFF3::LowLevel::Parser.3.gz
+%%PERL5_MAN3%%/Bio::GFF3::LowLevel::Parser::1_0_backcompat.3.gz
+%%PERL5_MAN3%%/Bio::GFF3::Transform::FromFasta.3.gz
+man/man1/gff3_from_fasta.1.gz
@dirrm %%SITE_PERL%%/%%PERL_ARCH%%/auto/Bio/GFF3
@dirrmtry %%SITE_PERL%%/%%PERL_ARCH%%/auto/Bio
@dirrm %%SITE_PERL%%/Bio/GFF3/Transform