- Update to 1.03

PR:		ports/106300
Submitted by:	chinsan
Approved by:	maintainer timeout (15 days)

3 files changed, 42 insertions, 105 deletions

diff --git a/biology/p5-Bio-Das/Makefile b/biology/p5-Bio-Das/Makefile
index 4b896e64c70d..570169912a9d 100644
--- a/biology/p5-Bio-Das/Makefile
+++ b/biology/p5-Bio-Das/Makefile
@@ -6,7 +6,7 @@
 #
 
 PORTNAME=	Bio-Das
-PORTVERSION=	1.02
+PORTVERSION=	1.03
 CATEGORIES=	biology
 MASTER_SITES=	http://www.biodas.org/download/Bio::Das/ \
 		${MASTER_SITE_PERL_CPAN}
@@ -25,57 +25,22 @@ RUN_DEPENDS=	${BUILD_DEPENDS}
 
 PERL_CONFIGURE=	YES
 
-MAN3=	Bio::Das.3 \
-	Bio::Das::AGPServer::Config.3 \
-	Bio::Das::AGPServer::Daemon.3 \
-	Bio::Das::AGPServer::Parser.3 \
-	Bio::Das::AGPServer::SQLStorage.3 \
+MAN3=	Bio::Das.3 Bio::Das::AGPServer::Config.3 Bio::Das::AGPServer::Daemon.3 \
+	Bio::Das::AGPServer::Parser.3 Bio::Das::AGPServer::SQLStorage.3 \
 	Bio::Das::AGPServer::SQLStorage::CSV::DB.3 \
 	Bio::Das::AGPServer::SQLStorage::MySQL::DB.3 \
-	Bio::Das::DSN.3 \
-	Bio::Das::Feature.3 \
-	Bio::Das::FeatureIterator.3 \
-	Bio::Das::HTTP::Fetch.3 \
-	Bio::Das::Map.3 \
-	Bio::Das::ProServer::Config.3 \
-	Bio::Das::ProServer::Daemon.3 \
-	Bio::Das::ProServer::Loader::agp.3 \
-	Bio::Das::ProServer::SourceAdaptor.3 \
-	Bio::Das::ProServer::SourceAdaptor::Transport::dbi.3 \
-	Bio::Das::ProServer::SourceAdaptor::Transport::file.3 \
-	Bio::Das::ProServer::SourceAdaptor::Transport::generic.3 \
-	Bio::Das::ProServer::SourceAdaptor::Transport::getz.3 \
-	Bio::Das::ProServer::SourceAdaptor::Transport::getzc.3 \
-	Bio::Das::ProServer::SourceAdaptor::Transport::oracle.3 \
-	Bio::Das::ProServer::SourceAdaptor::agp.3 \
-	Bio::Das::ProServer::SourceAdaptor::cosmic.3 \
-	Bio::Das::ProServer::SourceAdaptor::gensat.3 \
-	Bio::Das::ProServer::SourceAdaptor::haplotype.3 \
-	Bio::Das::ProServer::SourceAdaptor::image.3 \
-	Bio::Das::ProServer::SourceAdaptor::interpro.3 \
-	Bio::Das::ProServer::SourceAdaptor::simple.3 \
-	Bio::Das::ProServer::SourceAdaptor::snp.3 \
-	Bio::Das::ProServer::SourceAdaptor::sts.3 \
-	Bio::Das::ProServer::SourceAdaptor::swissprot.3 \
-	Bio::Das::ProServer::SourceAdaptor::trace.3 \
-	Bio::Das::Request.3 \
-	Bio::Das::Request::Dnas.3 \
-	Bio::Das::Request::Dsn.3 \
-	Bio::Das::Request::Entry_points.3 \
-	Bio::Das::Request::Feature2Segments.3 \
-	Bio::Das::Request::Sequences.3 \
-	Bio::Das::Request::Stylesheet.3 \
-	Bio::Das::Request::Types.3 \
-	Bio::Das::Segment.3 \
-	Bio::Das::Stylesheet.3 \
-	Bio::Das::Type.3 \
-	Bio::Das::TypeHandler.3 \
-	Bio::Das::Util.3
+	Bio::Das::DSN.3 Bio::Das::Feature.3 Bio::Das::FeatureIterator.3 \
+	Bio::Das::HTTP::Fetch.3 Bio::Das::Map.3 Bio::Das::Request.3 \
+	Bio::Das::Request::Dnas.3 Bio::Das::Request::Dsn.3 \
+	Bio::Das::Request::Entry_points.3 Bio::Das::Request::Feature2Segments.3 \
+	Bio::Das::Request::Sequences.3 Bio::Das::Request::Stylesheet.3 \
+	Bio::Das::Request::Types.3 Bio::Das::Segment.3 Bio::Das::Stylesheet.3 \
+	Bio::Das::Type.3 Bio::Das::TypeHandler.3 Bio::Das::Util.3
 
 .include <bsd.port.pre.mk>
 
 .if (${PERL_LEVEL} < 500601)
-BROKEN=	"Some dependencies doesn't work with Perl < 5.6.1"
+BROKEN=	Some dependencies requires at least 5.6.1  Please install lang/perl5.8 and try again
 .endif
 
 .include <bsd.port.post.mk>
diff --git a/biology/p5-Bio-Das/distinfo b/biology/p5-Bio-Das/distinfo
index 0acad07e55f2..518b1fb408e6 100644
--- a/biology/p5-Bio-Das/distinfo
+++ b/biology/p5-Bio-Das/distinfo
@@ -1,3 +1,3 @@
-MD5 (Bio-Das-1.02.tar.gz) = 6b3706f1ca52da18bd7c6376cf89b244
-SHA256 (Bio-Das-1.02.tar.gz) = 3aad2bbd746d1ce3468f26521793c7a9bad417b9670e061a9ef355f10a506705
-SIZE (Bio-Das-1.02.tar.gz) = 127150
+MD5 (Bio-Das-1.03.tar.gz) = 9971a1ab003d66c8e055ee00b31fede8
+SHA256 (Bio-Das-1.03.tar.gz) = af77f83d294ab6c720af49dbac58655325e2a9be79149d5437d67c888d1042a9
+SIZE (Bio-Das-1.03.tar.gz) = 101698
diff --git a/biology/p5-Bio-Das/pkg-plist b/biology/p5-Bio-Das/pkg-plist
index 3f4539044a6a..74720fe91ed8 100644
--- a/biology/p5-Bio-Das/pkg-plist
+++ b/biology/p5-Bio-Das/pkg-plist
@@ -1,63 +1,35 @@
+%%SITE_PERL%%/%%PERL_ARCH%%/auto/Bio/Das/.packlist
 %%SITE_PERL%%/Bio/Das.pm
-%%SITE_PERL%%/Bio/Das/AGPServer/Config.pm
-%%SITE_PERL%%/Bio/Das/AGPServer/Daemon.pm
-%%SITE_PERL%%/Bio/Das/AGPServer/Parser.pm
-%%SITE_PERL%%/Bio/Das/AGPServer/Proxy.pm
-%%SITE_PERL%%/Bio/Das/AGPServer/SQLStorage.pm
-%%SITE_PERL%%/Bio/Das/AGPServer/SQLStorage/CSV/DB.pm
-%%SITE_PERL%%/Bio/Das/AGPServer/SQLStorage/MySQL/DB.pm
 %%SITE_PERL%%/Bio/Das/DSN.pm
-%%SITE_PERL%%/Bio/Das/Feature.pm
-%%SITE_PERL%%/Bio/Das/FeatureIterator.pm
-%%SITE_PERL%%/Bio/Das/HTTP/Fetch.pm
-%%SITE_PERL%%/Bio/Das/Map.pm
-%%SITE_PERL%%/Bio/Das/ProServer/Config.pm
-%%SITE_PERL%%/Bio/Das/ProServer/Daemon.pm
-%%SITE_PERL%%/Bio/Das/ProServer/Loader/agp.pm
-%%SITE_PERL%%/Bio/Das/ProServer/SourceAdaptor.pm
-%%SITE_PERL%%/Bio/Das/ProServer/SourceAdaptor/Transport/bioseqio.pm
-%%SITE_PERL%%/Bio/Das/ProServer/SourceAdaptor/Transport/dbi.pm
-%%SITE_PERL%%/Bio/Das/ProServer/SourceAdaptor/Transport/file.pm
-%%SITE_PERL%%/Bio/Das/ProServer/SourceAdaptor/Transport/generic.pm
-%%SITE_PERL%%/Bio/Das/ProServer/SourceAdaptor/Transport/getz.pm
-%%SITE_PERL%%/Bio/Das/ProServer/SourceAdaptor/Transport/getzc.pm
-%%SITE_PERL%%/Bio/Das/ProServer/SourceAdaptor/Transport/oracle.pm
-%%SITE_PERL%%/Bio/Das/ProServer/SourceAdaptor/Transport/wgetz.pm
-%%SITE_PERL%%/Bio/Das/ProServer/SourceAdaptor/agp.pm
-%%SITE_PERL%%/Bio/Das/ProServer/SourceAdaptor/bioseq.pm
-%%SITE_PERL%%/Bio/Das/ProServer/SourceAdaptor/cosmic.pm
-%%SITE_PERL%%/Bio/Das/ProServer/SourceAdaptor/gensat.pm
-%%SITE_PERL%%/Bio/Das/ProServer/SourceAdaptor/haplotype.pm
-%%SITE_PERL%%/Bio/Das/ProServer/SourceAdaptor/image.pm
-%%SITE_PERL%%/Bio/Das/ProServer/SourceAdaptor/interpro.pm
-%%SITE_PERL%%/Bio/Das/ProServer/SourceAdaptor/simple.pm
-%%SITE_PERL%%/Bio/Das/ProServer/SourceAdaptor/snp.pm
-%%SITE_PERL%%/Bio/Das/ProServer/SourceAdaptor/sts.pm
-%%SITE_PERL%%/Bio/Das/ProServer/SourceAdaptor/swissprot.pm
-%%SITE_PERL%%/Bio/Das/ProServer/SourceAdaptor/trace.pm
 %%SITE_PERL%%/Bio/Das/Request.pm
-%%SITE_PERL%%/Bio/Das/Request/Dnas.pm
-%%SITE_PERL%%/Bio/Das/Request/Dsn.pm
-%%SITE_PERL%%/Bio/Das/Request/Entry_points.pm
-%%SITE_PERL%%/Bio/Das/Request/Feature2Segments.pm
-%%SITE_PERL%%/Bio/Das/Request/Features.pm
-%%SITE_PERL%%/Bio/Das/Request/Sequences.pm
-%%SITE_PERL%%/Bio/Das/Request/Stylesheet.pm
-%%SITE_PERL%%/Bio/Das/Request/Types.pm
-%%SITE_PERL%%/Bio/Das/Segment.pm
 %%SITE_PERL%%/Bio/Das/Stylesheet.pm
+%%SITE_PERL%%/Bio/Das/Map.pm
+%%SITE_PERL%%/Bio/Das/FeatureIterator.pm
+%%SITE_PERL%%/Bio/Das/Segment.pm
 %%SITE_PERL%%/Bio/Das/Type.pm
+%%SITE_PERL%%/Bio/Das/Feature.pm
 %%SITE_PERL%%/Bio/Das/TypeHandler.pm
 %%SITE_PERL%%/Bio/Das/Util.pm
-%%SITE_PERL%%/mach/auto/Bio/Das/.packlist
-@dirrm %%SITE_PERL%%/mach/auto/Bio/Das
-@dirrm %%SITE_PERL%%/Bio/Das/Request
-@dirrm %%SITE_PERL%%/Bio/Das/ProServer/SourceAdaptor/Transport
-@dirrm %%SITE_PERL%%/Bio/Das/ProServer/SourceAdaptor
-@dirrm %%SITE_PERL%%/Bio/Das/ProServer/Loader
-@dirrm %%SITE_PERL%%/Bio/Das/ProServer
-@dirrm %%SITE_PERL%%/Bio/Das/HTTP
-@dirrm %%SITE_PERL%%/Bio/Das/AGPServer/SQLStorage/MySQL
-@dirrm %%SITE_PERL%%/Bio/Das/AGPServer/SQLStorage/CSV
-@dirrm %%SITE_PERL%%/Bio/Das/AGPServer/SQLStorage
-@dirrm %%SITE_PERL%%/Bio/Das/AGPServer
+%%SITE_PERL%%/Bio/Das/Request/Sequences.pm
+%%SITE_PERL%%/Bio/Das/Request/Dnas.pm
+%%SITE_PERL%%/Bio/Das/Request/Types.pm
+%%SITE_PERL%%/Bio/Das/Request/Feature2Segments.pm
+%%SITE_PERL%%/Bio/Das/Request/Features.pm
+%%SITE_PERL%%/Bio/Das/Request/Dsn.pm
+%%SITE_PERL%%/Bio/Das/Request/Entry_points.pm
+%%SITE_PERL%%/Bio/Das/Request/Stylesheet.pm
+%%SITE_PERL%%/Bio/Das/AGPServer/SQLStorage.pm
+%%SITE_PERL%%/Bio/Das/AGPServer/Proxy.pm
+%%SITE_PERL%%/Bio/Das/AGPServer/Parser.pm
+%%SITE_PERL%%/Bio/Das/AGPServer/Daemon.pm
+%%SITE_PERL%%/Bio/Das/AGPServer/Config.pm
+%%SITE_PERL%%/Bio/Das/AGPServer/SQLStorage/CSV/DB.pm
+%%SITE_PERL%%/Bio/Das/AGPServer/SQLStorage/MySQL/DB.pm
+%%SITE_PERL%%/Bio/Das/HTTP/Fetch.pm
+@dirrmtry %%SITE_PERL%%/%%PERL_ARCH%%/auto/Bio/Das
+@dirrmtry %%SITE_PERL%%/Bio/Das/Request
+@dirrmtry %%SITE_PERL%%/Bio/Das/HTTP
+@dirrmtry %%SITE_PERL%%/Bio/Das/AGPServer/SQLStorage/MySQL
+@dirrmtry %%SITE_PERL%%/Bio/Das/AGPServer/SQLStorage/CSV
+@dirrmtry %%SITE_PERL%%/Bio/Das/AGPServer/SQLStorage
+@dirrmtry %%SITE_PERL%%/Bio/Das/AGPServer